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bacon 056f1f7529 biology/ncbi-blast+: Update to 2.13.0 
Several minor bug fixes and improvements since 2.11.0

Changes: https://www.ncbi.nlm.nih.gov/books/NBK131777/?report=reader
2022-04-10 20:54:51 +00:00
..
ad2vcf biology/ad2vcf: Update to 0.1.5 2022-03-15 21:08:32 +00:00
arka biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
azara revbump for icu and libffi 2021-12-08 16:01:42 +00:00
bcftools biology/bcftools: Update to 1.15 2022-02-26 23:14:33 +00:00
beagle biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
bedtools biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
biolibc biology/biolibc: Update to 0.2.2 2022-03-15 21:06:32 +00:00
biolibc-tools biology/biolibc-tools: Update to 0.1.2 2022-03-15 21:10:59 +00:00
bioperl biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
bodr revbump for icu and libffi 2021-12-08 16:01:42 +00:00
bowtie2 biology/bowtie2: Update to 2.4.4 2021-12-17 15:25:20 +00:00
bwa biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
canu *: Recursive revbump from boost 1.78.0 2022-01-10 01:46:21 +00:00
cdhit biology/cdhit: Update to 4.8.1 2021-12-17 17:57:55 +00:00
chemical-mime-data biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
chemtool revbump for icu and libffi 2021-12-08 16:01:42 +00:00
clustalw biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
coalesce biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
coordgenlibs *: Recursive revbump from boost 1.78.0 2022-01-10 01:46:21 +00:00
fastDNAml biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
fastp biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
fastqc biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
fastx-toolkit biology/fastx-toolkit: CLI tools for FASTA/FASTQ files preprocessing 2022-04-05 18:48:57 +00:00
filter-fastq biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
fluctuate biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
gabedit revbump for icu and libffi 2021-12-08 16:01:42 +00:00
generand biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
genesplicer biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
glimmer biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
gnome-chemistry-utils revbump for icu and libffi 2021-12-08 16:01:42 +00:00
gp biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
gromacs revbump for icu and libffi 2021-12-08 16:01:42 +00:00
hisat2 biology/hisat2: Update to 2.2.1 2022-03-17 16:01:11 +00:00
hmmer biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
htslib biology/htslib: Update to 1.15 2022-02-26 23:08:43 +00:00
igv biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
kallisto biology/kallisto: Update to 0.48.0 2022-02-27 01:57:27 +00:00
lucy biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
maeparser *: Recursive revbump from boost 1.78.0 2022-01-10 01:46:21 +00:00
miniasm biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
minimap2 (biology/minimap2) Updated 2.18 to 2.24 2022-03-13 08:05:07 +00:00
molsketch biology/molsketch: fix broken build 2022-01-11 16:45:09 +00:00
mopac biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
mpqc biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
mummer biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
ncbi-blast+ biology/ncbi-blast+: Update to 2.13.0 2022-04-10 20:54:51 +00:00
nut biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
openbabel *: Recursive revbump from boost 1.78.0 2022-01-10 01:46:21 +00:00
p5-Bio-ASN1-EntrezGene biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
pdbalign biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
peak-classifier biology/peak-classifier: Update to 0.1.3 2022-03-15 21:11:58 +00:00
phylip biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
plink biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
plinkseq revbump for devel/protobuf 2022-04-03 18:50:16 +00:00
primer3 biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
profit biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
puzzle biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
py-biopython py-biopython: update to 1.79. 2022-02-17 10:44:49 +00:00
py-cutadapt py-cutadapt: updated to 3.5 2022-01-17 09:03:10 +00:00
py-dnaio *: bump PKGREVISION for egg.mk users 2022-01-04 20:52:30 +00:00
py-pydicom python: egg.mk: add USE_PKG_RESOURCES flag 2022-01-05 15:40:56 +00:00
R-popbio biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
racon biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
rasmol biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
samtools biology/samtools: Update to 1.15 2022-02-26 23:11:43 +00:00
sewer biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
stacks biology/stacks: Update to 2.60 2022-03-17 23:49:08 +00:00
stride biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
trimmomatic biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
vcf-split biology/vcf-split: Update to 0.1.4 2022-03-15 21:12:52 +00:00
vcf2hap biology/vcf2hap: Update to 0.1.5 2022-03-15 21:13:46 +00:00
vsearch biology/vsearch: Update to 2.18.0 2021-12-17 19:20:44 +00:00
xylem biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
Makefile biology/Makefile: Add fastx-toolkit 2022-04-05 18:49:29 +00:00