pkgsrc/biology/bwa/patches/patch-Makefile
2015-12-12 16:56:04 +00:00

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629 B
Text

$NetBSD: patch-Makefile,v 1.1 2015/12/12 16:56:04 wiedi Exp $
Don't overwrite pkgsrc CC and CFLAGS
--- Makefile.orig 2014-05-19 13:11:41.000000000 +0000
+++ Makefile
@@ -1,6 +1,6 @@
-CC= gcc
+#CC= gcc
#CC= clang --analyze
-CFLAGS= -g -Wall -Wno-unused-function -O2
+#CFLAGS= -g -Wall -Wno-unused-function -O2
WRAP_MALLOC=-DUSE_MALLOC_WRAPPERS
AR= ar
DFLAGS= -DHAVE_PTHREAD $(WRAP_MALLOC)
@@ -11,7 +11,7 @@ AOBJS= QSufSort.o bwt_gen.o bwase.o bwa
bwtsw2_chain.o fastmap.o bwtsw2_pair.o
PROG= bwa
INCLUDES=
-LIBS= -lm -lz -lpthread
+LIBS= -lm -lz -lpthread $(LDFLAGS)
SUBDIRS= .
.SUFFIXES:.c .o .cc