b627116d1b
brook at biology dot nmsu dot edu and his team at NMSU. Mummer is a system for aligning whole genome sequences. Using an efficient data structure called a suffix tree, the system is able rapidly to align sequences containing millions of nucleotides whether in complete or draft form. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system.
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1.1 KiB
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44 lines
1.1 KiB
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@comment $NetBSD: PLIST,v 1.1.1.1 2003/09/27 22:24:57 jschauma Exp $
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bin/annotate
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bin/combineMUMs
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bin/gaps
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bin/mgaps
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bin/mummer
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bin/postnuc
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bin/postpro
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bin/prenuc
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bin/prepro
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bin/repeat-match
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bin/show-aligns
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bin/show-coords
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bin/show-tiling
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share/doc/html/mummer/covplot.gif
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share/doc/html/mummer/dotplot.gif
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share/doc/html/mummer/email.jpg
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share/doc/html/mummer/gaps.gif
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share/doc/html/mummer/index.html
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share/doc/html/mummer/manual_logo.gif
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share/doc/html/mummer/mgaps.gif
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share/doc/html/mummer/nuc_proex.gif
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share/doc/html/mummer/nucex.gif
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share/doc/html/mummer/osi.gif
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share/doc/html/mummer/pro_proex.gif
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share/doc/mummer/maxmat3man.pdf
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share/doc/mummer/maxmat3man.tex
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share/doc/mummer/maxmat3src.pdf
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share/doc/mummer/nucmer.README
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share/doc/mummer/optionman.sty
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share/doc/mummer/promer.README
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share/doc/mummer/run-mummer1.README
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share/doc/mummer/run-mummer3.README
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share/doc/mummer/skaff.sty
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share/mummer/exact-tandems
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share/mummer/mummerplot
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share/mummer/nucmer
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share/mummer/nucmer2xfig
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share/mummer/promer
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share/mummer/run-mummer1
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share/mummer/run-mummer3
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@dirrm share/mummer
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@dirrm share/doc/mummer
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@dirrm share/doc/html/mummer
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