7af09c75cf
Add p5-Text-Diff as test dependency.
1.7.2 - "Entebbe"
[Bugs]
* #247 - Omit unnecessary parent_id attribute added by GFF3Loader [nathanweeks]
* #245 - Code coverage fixes [zmughal,cjfields]
* #237 - Fix warning in Bio::DB::IndexedBase [willmclaren,bosborne]
* #238 - Use a Travis cron job for network tests [zmughal,cjfields]
* #218 - Bio::DB::Flat::BinarySearch should use _fh() instead of fh() as fh() does not take arguments in [thibauthourlier,bosborne]
* #227 - Bio::SeqIO Ignores first line of sequence [VAR121,bosborne]
* #223 - Use Travis Perl helper script and enable coverage [zmughal,cjfields]
* #222 - Fix test RemoteDB/Taxonomy.t: requires networking [zmughal,cjfields]
* #216 - Apply carsonhh's patch (Inline::C fixes) [carsonh,bosborne]
* #213 - Support FTS5 in Bio::DB::SeqFeature::Store::DBI::SQLite [nathanweeks,bosborne]
* #210 - Sorting qualifiers while write embl files [hdevillers,cjfields]
* #209 - Fixed bug in _toDsspKey() [jvolkening,hlapp]
[Code changes]
* PAML-related code from bioperl and bioperl-run are now in a separate distribution on CPAN [carandraug]
69 lines
2.9 KiB
Makefile
69 lines
2.9 KiB
Makefile
# $NetBSD: Makefile,v 1.35 2017/09/17 07:48:11 wiz Exp $
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DISTNAME= BioPerl-1.007002
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PKGNAME= ${DISTNAME:tl}
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CATEGORIES= biology perl5
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MASTER_SITES= ${MASTER_SITE_PERL_CPAN:=Bio/}
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MAINTAINER= pkgsrc-users@NetBSD.org
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HOMEPAGE= http://www.bioperl.org/
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COMMENT= Perl tools for computational molecular biology
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LICENSE= ${PERL5_LICENSE}
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#BUILD_DEPENDS+= {perl>=5.19.6,p5-Module-Build>0.42}:../../devel/p5-Module-Build
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BUILD_DEPENDS+= p5-Test-Most-[0-9]*:../../devel/p5-Test-Most
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DEPENDS+= p5-Algorithm-Munkres-[0-9]*:../../math/p5-Algorithm-Munkres
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DEPENDS+= p5-Array-Compare-[0-9]*:../../devel/p5-Array-Compare
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DEPENDS+= p5-Bio-ASN1-EntrezGene-[0-9]*:../../biology/p5-Bio-ASN1-EntrezGene
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DEPENDS+= p5-Clone-[0-9]*:../../devel/p5-Clone
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DEPENDS+= p5-Convert-Binary-C-[0-9]*:../../devel/p5-Convert-Binary-C
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#DEPENDS+= {perl>=5,p5-DB_File-[0-9]*}:../../databases/p5-DB_File
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DEPENDS+= p5-Data-Stag>=0.11:../../devel/p5-Data-Stag
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DEPENDS+= p5-Error-[0-9]*:../../devel/p5-Error
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#DEPENDS+= {perl>=5.10.1,p5-ExtUtils-Manifest>=1.52}:../../devel/p5-ExtUtils-Manifest
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DEPENDS+= p5-GD-[0-9]*:../../graphics/p5-GD
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DEPENDS+= p5-Graph>=0.50:../../devel/p5-Graph
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DEPENDS+= p5-GraphViz-[0-9]*:../../graphics/p5-GraphViz
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DEPENDS+= p5-HTML-Parser>=3:../../www/p5-HTML-Parser
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DEPENDS+= p5-HTML-TableExtract-[0-9]*:../../www/p5-HTML-TableExtract
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DEPENDS+= p5-IO-String-[0-9]*:../../devel/p5-IO-String
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DEPENDS+= p5-List-MoreUtils-[0-9]*:../../devel/p5-List-MoreUtils
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DEPENDS+= p5-PostScript-[0-9]*:../../print/p5-PostScript
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DEPENDS+= p5-SOAP-Lite-[0-9]*:../../net/p5-SOAP-Lite
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DEPENDS+= p5-SVG-Graph>=0.01:../../graphics/p5-SVG-Graph
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DEPENDS+= p5-SVG>=2.26:../../graphics/p5-SVG
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DEPENDS+= p5-Set-Scalar-[0-9]*:../../devel/p5-Set-Scalar
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DEPENDS+= p5-Sort-Naturally-[0-9]*:../../devel/p5-Sort-Naturally
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DEPENDS+= p5-Spreadsheet-ParseExcel-[0-9]*:../../math/p5-Spreadsheet-ParseExcel
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#DEPENDS+= {perl>=5.8.1,p5-Storable>=2.05}:../../devel/p5-Storable
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DEPENDS+= p5-XML-Parser-[0-9]*:../../textproc/p5-XML-Parser
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DEPENDS+= p5-XML-SAX-Writer-[0-9]*:../../textproc/p5-XML-SAX-Writer
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DEPENDS+= p5-XML-SAX>=0.15:../../textproc/p5-XML-SAX
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DEPENDS+= p5-XML-Simple-[0-9]*:../../textproc/p5-XML-Simple
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DEPENDS+= p5-XML-Twig-[0-9]*:../../textproc/p5-XML-Twig
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DEPENDS+= p5-XML-Writer>=0.4:../../textproc/p5-XML-Writer
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DEPENDS+= p5-YAML-[0-9]*:../../textproc/p5-YAML
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DEPENDS+= p5-libwww-[0-9]*:../../www/p5-libwww
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DEPENDS+= p5-libxml-[0-9]*:../../textproc/p5-libxml
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# Suggested
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DEPENDS+= p5-XML-DOM>=0:../../textproc/p5-XML-DOM
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# TEST_DEPENDS
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BUILD_DEPENDS+= p5-Text-Diff-[0-9]*:../../textproc/p5-Text-Diff
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USE_TOOLS+= pax
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REPLACE_PERL+= scripts/*/*.pl Bio/LiveSeq/Chain.pm
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PERL5_MODULE_TYPE= Module::Build
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PERL5_PACKLIST= auto/Bio/.packlist
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INSTALLATION_DIRS= share/examples/bioperl
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post-install:
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cd ${WRKSRC}/examples && ${PAX} -rw . ${DESTDIR}${PREFIX}/share/examples/bioperl
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.include "options.mk"
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.include "../../lang/perl5/module.mk"
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.include "../../mk/bsd.pkg.mk"
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