487853693e
brook at biology dot nmsu dot edu and his team at NMSU. FLUCTUATE fits the model which has a single population which has been growing (or shrinking) according to an exponential growth law. It estimates 4Nu and g, where N is the effective population size, u is the neutral mutation rate per site, and g is the growth rate of the population.
45 lines
1.2 KiB
Text
45 lines
1.2 KiB
Text
$NetBSD: patch-aa,v 1.1.1.1 2003/09/30 01:19:32 jschauma Exp $
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--- Makefile.orig 2003-09-29 21:08:30.000000000 -0400
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+++ Makefile 2003-09-29 21:09:31.000000000 -0400
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@@ -1,30 +1,30 @@
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LIBS = -lm
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BINDIR = ./bin
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-CFLAGS = -O2 -funroll-loops
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-CC = gcc $(CFLAGS)
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+CFLAGS += -O2 -funroll-loops
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+#CC = gcc $(CFLAGS)
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fluctuate : fluctuate.o fluc_modellike.o getdata.o plot.o wrap.o \
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coal_modellike.o
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- $(CC) fluctuate.o fluc_modellike.o getdata.o plot.o wrap.o \
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- coal_modellike.o $(LIBS) -o fluctuate
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+ $(CC) ${CFLAGS} fluctuate.o fluc_modellike.o getdata.o plot.o wrap.o \
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+ coal_modellike.o ${LDFLAGS} $(LIBS) -o fluctuate
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clean :
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rm fluctuate.o fluc_modellike.o coal_modellike.o getdata.o plot.o wrap.o
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fluctuate.o : fluctuate.c
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- $(CC) -c fluctuate.c
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+ $(CC) ${CFLAGS} -c fluctuate.c
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fluc_modellike.o : fluc_modellike.c
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- $(CC) -c fluc_modellike.c
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+ $(CC) ${CFLAGS} -c fluc_modellike.c
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coal_modellike.o : coal_modellike.c
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- $(CC) -c coal_modellike.c
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+ $(CC) ${CFLAGS} -c coal_modellike.c
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getdata.o : getdata.c
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- $(CC) -c getdata.c
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+ $(CC) ${CFLAGS} -c getdata.c
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plot.o : plot.c
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- $(CC) -c plot.c
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+ $(CC) ${CFLAGS} -c plot.c
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wrap.o : wrap.c
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- $(CC) -c wrap.c
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+ $(CC) ${CFLAGS} -c wrap.c
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