f4364c13ef
brook at biology dot nmsu dot edu and his team at NMSU. GeneSplicer is a fast, flexible system for detecting splice sites in the genomic DNA of various eukaryotes. The system has been trained and tested successfully on Plasmodium falciparum (malaria), Arabidopsis thaliana, human, Drosophila, and rice.
148 lines
6.5 KiB
Text
148 lines
6.5 KiB
Text
@comment $NetBSD: PLIST,v 1.1.1.1 2003/09/30 01:57:09 jschauma Exp $
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bin/genesplicer
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share/examples/genesplicer/arabidopsis/acc1.mar
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share/examples/genesplicer/arabidopsis/acc15
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share/examples/genesplicer/arabidopsis/acc16
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share/examples/genesplicer/arabidopsis/acc22
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share/examples/genesplicer/arabidopsis/acc24
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share/examples/genesplicer/arabidopsis/acc25
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share/examples/genesplicer/arabidopsis/acc26
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share/examples/genesplicer/arabidopsis/acc6
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share/examples/genesplicer/arabidopsis/acc7
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share/examples/genesplicer/arabidopsis/acc8
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share/examples/genesplicer/arabidopsis/config_file
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share/examples/genesplicer/arabidopsis/don1.mar
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share/examples/genesplicer/arabidopsis/don13
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share/examples/genesplicer/arabidopsis/don14
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share/examples/genesplicer/arabidopsis/don19
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share/examples/genesplicer/arabidopsis/don20
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share/examples/genesplicer/arabidopsis/don23
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share/examples/genesplicer/arabidopsis/don24
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share/examples/genesplicer/arabidopsis/don7
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share/examples/genesplicer/arabidopsis/don8
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share/examples/genesplicer/arabidopsis/exons.dat
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share/examples/genesplicer/arabidopsis/f.acc
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share/examples/genesplicer/arabidopsis/f.don
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share/examples/genesplicer/arabidopsis/outex
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share/examples/genesplicer/arabidopsis/outin
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share/examples/genesplicer/arabidopsis/score_ex.acc
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share/examples/genesplicer/arabidopsis/score_ex.don
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share/examples/genesplicer/arabidopsis/score_in.acc
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share/examples/genesplicer/arabidopsis/score_in.don
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share/examples/genesplicer/arabidopsis/seqs
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share/examples/genesplicer/drosophila/acc1.mar
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share/examples/genesplicer/drosophila/acc2
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share/examples/genesplicer/drosophila/acc3
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share/examples/genesplicer/drosophila/acc4
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share/examples/genesplicer/drosophila/config_file
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share/examples/genesplicer/drosophila/don1.mar
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share/examples/genesplicer/drosophila/don2
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share/examples/genesplicer/drosophila/don4
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share/examples/genesplicer/drosophila/don5
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share/examples/genesplicer/drosophila/don6
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share/examples/genesplicer/drosophila/exons.dat
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share/examples/genesplicer/drosophila/f.acc
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share/examples/genesplicer/drosophila/f.don
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share/examples/genesplicer/drosophila/false.filter.acc
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share/examples/genesplicer/drosophila/false.filter.don
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share/examples/genesplicer/drosophila/false.nofilter.acc
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share/examples/genesplicer/drosophila/false.nofilter.don
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share/examples/genesplicer/drosophila/outex
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share/examples/genesplicer/drosophila/outin
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share/examples/genesplicer/drosophila/score_ex.acc
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share/examples/genesplicer/drosophila/score_ex.don
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share/examples/genesplicer/drosophila/score_in.acc
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share/examples/genesplicer/drosophila/score_in.don
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share/examples/genesplicer/drosophila/seqs
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share/examples/genesplicer/fasta.example
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share/examples/genesplicer/fasta.results
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share/examples/genesplicer/human/acc1.mar
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share/examples/genesplicer/human/acc13
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share/examples/genesplicer/human/acc14
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share/examples/genesplicer/human/acc19
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share/examples/genesplicer/human/acc20
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share/examples/genesplicer/human/acc25
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share/examples/genesplicer/human/acc26
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share/examples/genesplicer/human/acc32
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share/examples/genesplicer/human/acc33
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share/examples/genesplicer/human/acc34
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share/examples/genesplicer/human/acc7
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share/examples/genesplicer/human/acc8
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share/examples/genesplicer/human/chgd.fasta
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share/examples/genesplicer/human/config_file
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share/examples/genesplicer/human/don1.mar
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share/examples/genesplicer/human/don10
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share/examples/genesplicer/human/don15
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share/examples/genesplicer/human/don16
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share/examples/genesplicer/human/don19
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share/examples/genesplicer/human/don2
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share/examples/genesplicer/human/don20
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share/examples/genesplicer/human/don23
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share/examples/genesplicer/human/don24
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share/examples/genesplicer/human/don9
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share/examples/genesplicer/human/embls.seq
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share/examples/genesplicer/human/exons.dat
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share/examples/genesplicer/human/exons.list
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share/examples/genesplicer/human/f.acc
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share/examples/genesplicer/human/f.don
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share/examples/genesplicer/human/outex
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share/examples/genesplicer/human/outin
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share/examples/genesplicer/human/score_ex.acc
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share/examples/genesplicer/human/score_ex.don
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share/examples/genesplicer/human/score_in.acc
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share/examples/genesplicer/human/score_in.don
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share/examples/genesplicer/human/seqs
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share/examples/genesplicer/malaria/acc1.mar
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share/examples/genesplicer/malaria/config_file
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share/examples/genesplicer/malaria/don1.mar
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share/examples/genesplicer/malaria/f.acc
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share/examples/genesplicer/malaria/f.don
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share/examples/genesplicer/malaria/false.filter.acc
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share/examples/genesplicer/malaria/false.filter.don
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share/examples/genesplicer/malaria/false.nofilter.acc
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share/examples/genesplicer/malaria/false.nofilter.don
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share/examples/genesplicer/malaria/score_ex.acc
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share/examples/genesplicer/malaria/score_ex.don
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share/examples/genesplicer/malaria/score_in.acc
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share/examples/genesplicer/malaria/score_in.don
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share/examples/genesplicer/pyoelii/acc1
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share/examples/genesplicer/pyoelii/acc1.mar
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share/examples/genesplicer/pyoelii/acc2
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share/examples/genesplicer/pyoelii/config_file
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share/examples/genesplicer/pyoelii/don1
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share/examples/genesplicer/pyoelii/don1.mar
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share/examples/genesplicer/pyoelii/don2
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share/examples/genesplicer/pyoelii/f.acc
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share/examples/genesplicer/pyoelii/f.don
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share/examples/genesplicer/pyoelii/outex
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share/examples/genesplicer/pyoelii/outin
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share/examples/genesplicer/pyoelii/score_ex.acc
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share/examples/genesplicer/pyoelii/score_ex.don
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share/examples/genesplicer/pyoelii/score_in.acc
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share/examples/genesplicer/pyoelii/score_in.don
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share/examples/genesplicer/readme
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share/examples/genesplicer/rice/acc1.mar
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share/examples/genesplicer/rice/config_file
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share/examples/genesplicer/rice/don1.mar
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share/examples/genesplicer/rice/exons.dat
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share/examples/genesplicer/rice/f.acc
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share/examples/genesplicer/rice/f.don
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share/examples/genesplicer/rice/score_ex.acc
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share/examples/genesplicer/rice/score_ex.don
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share/examples/genesplicer/rice/score_in.acc
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share/examples/genesplicer/rice/score_in.don
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share/examples/genesplicer/rice/seqs
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share/examples/genesplicer/training_data_sets/Arabidopsis/exons.dat.nohomologs
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share/examples/genesplicer/training_data_sets/Arabidopsis/seqs.nohomologs
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share/examples/genesplicer/training_data_sets/Human/exons.dat.nohomologs
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share/examples/genesplicer/training_data_sets/Human/seqs.nohomologs
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@dirrm share/examples/genesplicer/training_data_sets/Human
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@dirrm share/examples/genesplicer/training_data_sets/Arabidopsis
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@dirrm share/examples/genesplicer/training_data_sets
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@dirrm share/examples/genesplicer/rice
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@dirrm share/examples/genesplicer/pyoelii
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@dirrm share/examples/genesplicer/malaria
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@dirrm share/examples/genesplicer/human
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@dirrm share/examples/genesplicer/drosophila
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@dirrm share/examples/genesplicer/arabidopsis
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@dirrm share/examples/genesplicer
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