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bsiegert e31ffa14e6 New package, coordgenlibs-1.4.2. 
Part of PR pkg/55755.

This is Schroedinger, Inc's 2D coordinate generation.  It was formerly
proprietary code, but is now released under the BSD license.

The emphasis of these algorithms are on quality of 2D coordinates rather than
speed of generation.  The algorithm distinguishes itself from many others by
doing well with both macrocycles and metal complexes.  It also does extremely
well on typical drug-like small molecules, and has been validated on millions
of compounds.
2020-11-03 20:17:59 +00:00
..
arka biology/arka: document 2 instances of char as array index 2020-05-03 14:58:18 +00:00
azara *: recursive bump for libffi 2020-03-08 16:47:24 +00:00
bcftools *: bump PKGREVISION for perl-5.32. 2020-08-31 18:06:29 +00:00
bioperl bioperl: update to 1.7.7. 2020-09-06 20:07:47 +00:00
bodr *: bump PKGREVISION for perl-5.32. 2020-08-31 18:06:29 +00:00
bwa *: bump PKGREVISION for perl-5.32. 2020-08-31 18:06:29 +00:00
canu *: bump PKGREVISION for perl-5.32. 2020-08-31 18:06:29 +00:00
cdhit *: bump PKGREVISION for perl-5.32. 2020-08-31 18:06:29 +00:00
chemical-mime-data chemical-mime-data: comment out dead sites 2017-12-24 09:42:12 +00:00
chemtool *: revbump after fontconfig bl3 changes (libuuid removal) 2020-08-17 20:17:15 +00:00
clustalw Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
coalesce Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
coordgenlibs New package, coordgenlibs-1.4.2. 2020-11-03 20:17:59 +00:00
fastDNAml
fastp biology/fastp: document possible array[char] bug 2020-05-25 05:18:35 +00:00
fluctuate Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
gabedit *: revbump after fontconfig bl3 changes (libuuid removal) 2020-08-17 20:17:15 +00:00
genesplicer
glimmer Sort PLIST files. 2018-01-01 22:29:15 +00:00
gnome-chemistry-utils gnome-chemistry-utils: fix builds 2020-09-25 03:56:49 +00:00
gp all: migrate homepages from http to https 2020-01-26 17:30:40 +00:00
gromacs *: bump PKGREVISION for perl-5.32. 2020-08-31 18:06:29 +00:00
hisat2 *: bump PKGREVISION for perl-5.32. 2020-08-31 18:06:29 +00:00
hmmer Convert all occurrences (353 by my count) of 2017-01-19 18:52:01 +00:00
htslib *: bump PKGREVISION for perl-5.32. 2020-08-31 18:06:29 +00:00
kallisto kallisto: remove patches that were removed from distinfo during update 2020-07-30 07:59:19 +00:00
lucy mark packages that fail with -Werror=char-subscripts 2020-05-20 06:09:03 +00:00
maeparser New package, maeparser-1.4.2. 2020-11-03 16:41:26 +00:00
mopac
mpqc math/blas, math/lapack: Install interchangeable BLAS system 2020-10-12 21:51:57 +00:00
mummer *: bump PKGREVISION for perl-5.32. 2020-08-31 18:06:29 +00:00
ncbi-blast+ *: bump PKGREVISION for perl-5.32. 2020-08-31 18:06:29 +00:00
nut all: migrate some SourceForge homepage URLs back from https to http 2020-01-26 05:26:08 +00:00
openbabel (biology/openbabel) Regen PLIST 2020-11-01 23:06:39 +00:00
p5-Bio-ASN1-EntrezGene p5-Bio-ASN1-EntrezGene: update to 1.73. 2020-09-06 19:43:03 +00:00
pdbalign
phylip biology: align variable assignments 2019-11-02 22:09:00 +00:00
plink math/blas, math/lapack: Install interchangeable BLAS system 2020-10-12 21:51:57 +00:00
plinkseq Multiple packages: Replace obsolete maintainer email 2019-01-13 22:06:42 +00:00
primer3 *: Convert broken sourceforge HOMEPAGEs back to http 2020-03-20 11:57:22 +00:00
profit
puzzle biology: align variable assignments 2019-11-02 22:09:00 +00:00
py-biopython math/blas, math/lapack: Install interchangeable BLAS system 2020-10-12 21:51:57 +00:00
py-mol math/blas, math/lapack: Install interchangeable BLAS system 2020-10-12 21:51:57 +00:00
py-pydicom py-pydicom: Update to 1.3.0 2019-10-01 14:45:29 +00:00
R-popbio biology/R-popbio: import R-popbio-2.7 2020-08-10 18:18:46 +00:00
rasmol
samtools *: bump PKGREVISION for perl-5.32. 2020-08-31 18:06:29 +00:00
sewer Sort PLIST files. 2018-01-01 22:29:15 +00:00
stacks *: bump PKGREVISION for perl-5.32. 2020-08-31 18:06:29 +00:00
stride Comment out dead sites. 2017-09-04 18:00:49 +00:00
trimmomatic biology/trimmomatic: import Trimmomatic-0.38 2018-07-25 15:14:32 +00:00
vsearch Fix portability 2020-03-26 02:37:38 +00:00
xylem all: migrate homepages from http to https 2020-01-26 17:30:40 +00:00
Makefile New package, coordgenlibs-1.4.2. 2020-11-03 20:17:59 +00:00