ed400565a2
brook at biology dot nmsu dot edu and his team at NMSU. COALESCE fits the model which has a single population of constant size, and estimates 4Nu, where N is the effective population size and u is the neutral mutation rate per site.
33 lines
965 B
Makefile
33 lines
965 B
Makefile
# $NetBSD: Makefile,v 1.1.1.1 2003/09/30 01:03:56 jschauma Exp $
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#
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DISTNAME= coalesce1.5b
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PKGNAME= coalesce-1.5.0.2
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WRKSRC= ${WRKDIR}/coalesce1.5beta
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CATEGORIES= biology
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MASTER_SITES= ftp://evolution.genetics.washington.edu/pub/lamarc/coalesce/
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MAINTAINER= brook@nmsu.edu
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HOMEPAGE= http://evolution.genetics.washington.edu/lamarc/coalesce.html
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COMMENT= Estimates effective population size and mutation rate
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USE_BUILDLINK2= YES
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ALL_TARGET= coalesce
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DOCDIR= ${PREFIX}/share/doc/coalesce
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EXDIR= ${PREFIX}/share/examples/coalesce
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DOCFILES= coalesce.doc errors.doc readme
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EXFILES= bestree infile intree outfile parmfile seedfile
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do-install:
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${INSTALL_DATA_DIR} ${DOCDIR}
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${INSTALL_DATA_DIR} ${EXDIR}
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${INSTALL_PROGRAM} ${WRKSRC}/coalesce ${PREFIX}/bin/
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for f in ${DOCFILES}; do \
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${INSTALL_DATA} ${WRKSRC}/$$f ${DOCDIR}/$$f; \
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done
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for f in ${EXFILES}; do \
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${INSTALL_DATA} ${WRKSRC}/$$f ${EXDIR}/$$f; \
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done
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.include "../../mk/bsd.pkg.mk"
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