46 lines
1.5 KiB
Makefile
46 lines
1.5 KiB
Makefile
# $NetBSD: Makefile,v 1.3 2022/06/28 11:31:00 wiz Exp $
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DISTNAME= fastqc_v${PKGVERSION_NOREV}
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PKGNAME= fastqc-0.11.9
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PKGREVISION= 2
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CATEGORIES= biology
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MASTER_SITES= https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
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EXTRACT_SUFX= .zip
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MAINTAINER= bacon@NetBSD.org
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HOMEPAGE= https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
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COMMENT= Quality control tool for high throughput sequence data
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LICENSE= gnu-gpl-v3
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SUBST_CLASSES+= javapath
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SUBST_STAGE.javapath= pre-configure
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SUBST_SED.javapath+= -e 's|$$RealBin$$delimiter|${DATADIR}$$delimiter${JAVAJARDIR}/fastqc$$delimiter|g'
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SUBST_SED.javapath+= -e 's|$$RealBin/|${JAVAJARDIR}/fastqc/|g'
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SUBST_FILES.javapath+= fastqc
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USE_TOOLS+= perl:run pax
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USE_JAVA= run
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USE_JAVA2= 8
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WRKSRC= ${WRKDIR}/FastQC
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REPLACE_PERL= fastqc
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NO_BUILD= yes
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DATADIR= ${PREFIX}/share/fastqc
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DOCSDIR= ${PREFIX}/share/doc/fastqc
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JAVAJARDIR= ${PREFIX}/share/java/classes
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INSTALLATION_DIRS= bin ${DATADIR} ${DOCSDIR} ${JAVAJARDIR}/fastqc
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do-install:
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${INSTALL_DATA} ${WRKSRC}/*.jar ${DESTDIR}${JAVAJARDIR}/fastqc
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${INSTALL_SCRIPT} ${WRKSRC}/fastqc ${DESTDIR}${PREFIX}/bin
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cd ${WRKSRC} && pax -rw Configuration ${DESTDIR}${DATADIR}
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cd ${WRKSRC} && pax -rw Templates ${DESTDIR}${DATADIR}
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cd ${WRKSRC} && pax -rw net ${DESTDIR}${JAVAJARDIR}/fastqc
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cd ${WRKSRC} && pax -rw org ${DESTDIR}${JAVAJARDIR}/fastqc
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cd ${WRKSRC} && pax -rw uk ${DESTDIR}${JAVAJARDIR}/fastqc
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cd ${WRKSRC} && pax -rw Help ${DESTDIR}${DOCSDIR}
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.include "../../mk/bsd.pkg.mk"
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