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pkgsrc/biology
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brook 3f19906b94 biology/R-popbio: import R-popbio-2.7 
Construct and analyze projection matrix models from a demography study
of marked individuals classified by age or stage. The package covers
methods described in Matrix Population Models by Caswell (2001) and
Quantitative Conservation Biology by Morris and Doak (2002).
2020-08-10 18:18:46 +00:00
..
arka biology/arka: document 2 instances of char as array index 2020-05-03 14:58:18 +00:00
azara *: recursive bump for libffi 2020-03-08 16:47:24 +00:00
bcftools biology/bcftools: Upgrade to 1.10.2 2020-07-27 00:29:04 +00:00
bioperl biology: align variable assignments 2019-11-02 22:09:00 +00:00
bodr Revbump for icu 2020-06-02 08:22:31 +00:00
bwa all: migrate some SourceForge homepage URLs back from https to http 2020-01-26 05:26:08 +00:00
canu biology/canu: fix build on NetBSD-8.0-x86_64 2020-05-16 19:50:21 +00:00
cdhit Bump PKGREVISIONs for perl 5.30.0 2019-08-11 13:17:48 +00:00
chemical-mime-data chemical-mime-data: comment out dead sites 2017-12-24 09:42:12 +00:00
chemtool librsvg: update bl3.mk to remove libcroco in rust case 2020-03-10 22:08:37 +00:00
clustalw Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
coalesce Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
fastDNAml
fastp biology/fastp: document possible array[char] bug 2020-05-25 05:18:35 +00:00
fluctuate Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
gabedit librsvg: update bl3.mk to remove libcroco in rust case 2020-03-10 22:08:37 +00:00
genesplicer
glimmer Sort PLIST files. 2018-01-01 22:29:15 +00:00
gnome-chemistry-utils gnome-chemistry-utils: Update to 0.14.16 2020-06-29 13:04:48 +00:00
gp all: migrate homepages from http to https 2020-01-26 17:30:40 +00:00
gromacs Revbump for icu 2020-06-02 08:22:31 +00:00
hisat2 Bump PKGREVISIONs for perl 5.30.0 2019-08-11 13:17:48 +00:00
hmmer Convert all occurrences (353 by my count) of 2017-01-19 18:52:01 +00:00
htslib bioloty/htslib: Correct bl2 (ABI bump, not API) 2020-07-22 15:36:55 +00:00
kallisto kallisto: remove patches that were removed from distinfo during update 2020-07-30 07:59:19 +00:00
lucy mark packages that fail with -Werror=char-subscripts 2020-05-20 06:09:03 +00:00
mopac Fix build. 2015-12-26 22:36:07 +00:00
mpqc biology: align variable assignments 2019-11-02 22:09:00 +00:00
mummer all: migrate some SourceForge homepage URLs back from https to http 2020-01-26 05:26:08 +00:00
ncbi-blast+ Revbump for icu 2020-06-02 08:22:31 +00:00
nut all: migrate some SourceForge homepage URLs back from https to http 2020-01-26 05:26:08 +00:00
openbabel openbabel: Fix PLIST 2020-06-29 12:40:02 +00:00
p5-Bio-ASN1-EntrezGene Bump PKGREVISIONs for perl 5.30.0 2019-08-11 13:17:48 +00:00
pdbalign
phylip biology: align variable assignments 2019-11-02 22:09:00 +00:00
plink Multiple packages: Replace obsolete maintainer email 2019-01-13 22:06:42 +00:00
plinkseq Multiple packages: Replace obsolete maintainer email 2019-01-13 22:06:42 +00:00
primer3 *: Convert broken sourceforge HOMEPAGEs back to http 2020-03-20 11:57:22 +00:00
profit Moved documentation to share/doc/${PKGBASE}. Bumped PKGREVISION. 2016-07-24 21:11:52 +00:00
puzzle biology: align variable assignments 2019-11-02 22:09:00 +00:00
py-biopython all: migrate homepages from http to https 2020-01-26 17:30:40 +00:00
py-mol py-mol: use buildlink for py-numpy 2020-04-27 18:33:18 +00:00
py-pydicom py-pydicom: Update to 1.3.0 2019-10-01 14:45:29 +00:00
R-popbio biology/R-popbio: import R-popbio-2.7 2020-08-10 18:18:46 +00:00
rasmol
samtools biology/samtools: Upgrade to 1.10 2020-07-26 23:30:29 +00:00
sewer Sort PLIST files. 2018-01-01 22:29:15 +00:00
stacks Bump PKGREVISIONs for perl 5.30.0 2019-08-11 13:17:48 +00:00
stride Comment out dead sites. 2017-09-04 18:00:49 +00:00
trimmomatic biology/trimmomatic: import Trimmomatic-0.38 2018-07-25 15:14:32 +00:00
vsearch Fix portability 2020-03-26 02:37:38 +00:00
xylem all: migrate homepages from http to https 2020-01-26 17:30:40 +00:00
Makefile biology/R-popbio: import R-popbio-2.7 2020-08-10 18:18:46 +00:00