68 lines
2.7 KiB
Makefile
68 lines
2.7 KiB
Makefile
# $NetBSD: Makefile,v 1.14 2020/04/12 08:28:20 adam Exp $
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DISTNAME= ncbi-blast-2.8.1+-src
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PKGNAME= ${DISTNAME:S/+-src//:S/blast/blast+/}
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PKGREVISION= 7
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CATEGORIES= biology
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MASTER_SITES= https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \
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https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PKGVERSION_NOREV}/
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MAINTAINER= bacon@NetBSD.org
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HOMEPAGE= http://blast.ncbi.nlm.nih.gov/
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COMMENT= NCBI implementation of Basic Local Alignment Search Tool
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LICENSE= public-domain
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# Fix "undefined _ThreadRuneLocale" error on FreeBSD 10.0
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# Fix "unknown options" in configure
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SUBST_CLASSES+= configure
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SUBST_STAGE.configure= pre-configure
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SUBST_SED.configure+= -e 's|-D_THREAD_SAFE|-D_THREAD_SAFE -D__RUNETYPE_INTERNAL|'
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SUBST_SED.configure+= -e '/--infodir=DIR/d'
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SUBST_SED.configure+= -e '/--mandir=DIR/d'
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SUBST_FILES.configure+= ${WRKSRC}/src/build-system/configure
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USE_TOOLS+= bash gmake perl
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USE_LANGUAGES= c c++
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GNU_CONFIGURE= yes
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GNU_CONFIGURE_STRICT= no # doesn't know --enable-option-checking
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REPLACE_BASH= scripts/common/impl/define_random_macros.sh
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REPLACE_BASH+= src/app/blast/get_species_taxids.sh
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REPLACE_PERL= src/app/blast/legacy_blast.pl src/app/blast/update_blastdb.pl
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REPLACE_PYTHON= src/app/winmasker/windowmasker_2.2.22_adapter.py
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# The test for amq can hang, but amq is not needed so just avoid the test
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# configure chooses /usr/local/bin/ar with no flags
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# Resolve a conflict with libproj by moving libs to a subdir
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CONFIGURE_ENV= ncbi_cv_prog_amq_w=no
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CONFIGURE_ARGS+= AR="ar cr" --without-boost
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CONFIGURE_ARGS+= --libdir=${PREFIX}/lib/ncbi-tools++
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WRKSRC= ${WRKDIR}/${DISTNAME}/c++
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.include "../../mk/bsd.prefs.mk"
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.if ${OPSYS} == NetBSD
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# statfs is deprecated on NetBSD, but still exists in libc
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# configure checks only for undefined reference, not for usability
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CONFIGURE_ENV+= ac_cv_func_statfs=no
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.endif
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post-install:
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${RM} ${DESTDIR}${PREFIX}/include/ncbi-tools++/*/*/.cvsignore.extra
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${STRIP} ${DESTDIR}${PREFIX}/lib/ncbi-tools++/*.so
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.include "../../devel/zlib/buildlink3.mk"
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.include "../../archivers/lzo/buildlink3.mk"
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.include "../../archivers/bzip2/buildlink3.mk"
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.include "../../devel/pcre/buildlink3.mk"
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.include "../../databases/lmdb/buildlink3.mk"
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.include "../../security/gnutls/buildlink3.mk"
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.include "../../devel/gmp/buildlink3.mk"
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.include "../../devel/libidn2/buildlink3.mk"
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.include "../../security/nettle/buildlink3.mk"
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.include "../../security/libtasn1/buildlink3.mk"
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.include "../../security/p11-kit/buildlink3.mk"
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.include "../../security/libgcrypt/buildlink3.mk"
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.include "../../databases/sqlite3/buildlink3.mk"
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.include "../../security/libgpg-error/buildlink3.mk"
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.include "../../lang/python/application.mk"
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.include "../../mk/bsd.pkg.mk"
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