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mozoezomoe 2024-06-10 13:15:46 +02:00
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commit 5b7cc4f8e2
59 changed files with 13680 additions and 506 deletions
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56
results/customStudy/custom_Ind/specialCases/df_pred-test_lgbm_DHPAA.GG_urine_post_DHPAA.GG_urine_post.csv
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@ -1,29 +1,29 @@
;DHPAA.GG_urine_post_pred;DHPAA.GG_urine_post_test
135;0.028153156055213128;0.02306918427348137
66;0.018361467996007543;0.02124183
31;0.01845511186209114;0.011437908
118;0.050374303744972336;0.049019608
42;0.036810230067259544;0.02283056080341339
12;0.05219072017192368;0.06341682374477386
51;0.06314230449378826;0.081699346
68;0.032156267227236364;0.013071895
126;0.028153156055213128;0.03025123104453087
55;0.017200176868291738;0.022875817
112;0.028287330195368495;0.038646358996629715
130;0.06512786516866897;0.058823529
80;0.036769699793187775;0.02044045552611351
19;0.0646236779087797;0.091503268
86;0.06512786516866897;0.088235294
69;0.03409086651673512;0.016339869
11;0.031212544361196616;0.041303522884845734
27;0.036461300354839396;0.032679739
134;0.036810230067259544;0.031945351511240005
109;0.036038730903312076;0.050144873559474945
36;0.05406548222590799;0.021195339038968086
117;0.018320937721935774;0.011437908
78;0.04159588633530323;0.032308947294950485
4;0.027259469129501897;0.006535948
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66;0.02489133679527135;0.02124183
31;0.024208558825179707;0.011437908
118;0.05032729729877841;0.049019608
42;0.03822388806769223;0.02283056080341339
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80;0.03822388806769223;0.02044045552611351
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27;0.03226087550142653;0.032679739
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109;0.037149413359990724;0.050144873559474945
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117;0.024208558825179707;0.011437908
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26;0.0656233068217385;0.109477124
132;0.02264076249153568;0.004901961
60;0.036466635389899096;0.05469038337469101

1 DHPAA.GG_urine_post_pred DHPAA.GG_urine_post_test
2 135 0.028153156055213128 0.03665609173404821 0.02306918427348137
3 66 0.018361467996007543 0.02489133679527135 0.02124183
4 31 0.01845511186209114 0.024208558825179707 0.011437908
5 118 0.050374303744972336 0.05032729729877841 0.049019608
6 42 0.036810230067259544 0.03822388806769223 0.02283056080341339
7 12 0.05219072017192368 0.043304848916950814 0.06341682374477386
8 51 0.06314230449378826 0.06386605414394533 0.081699346
9 68 0.032156267227236364 0.028796198048495824 0.013071895
10 126 0.028153156055213128 0.03665609173404821 0.03025123104453087
11 55 0.017200176868291738 0.022451306147386555 0.022875817
12 112 0.028287330195368495 0.03665609173404821 0.038646358996629715
13 130 0.06512786516866897 0.05946787126477838 0.058823529
14 80 0.036769699793187775 0.03822388806769223 0.02044045552611351
15 19 0.0646236779087797 0.06653026313364212 0.091503268
16 86 0.06512786516866897 0.05946787126477838 0.088235294
17 69 0.03409086651673512 0.03127095069404356 0.016339869
18 11 0.031212544361196616 0.036466635389899096 0.041303522884845734
19 27 0.036461300354839396 0.03226087550142653 0.032679739
20 134 0.036810230067259544 0.03822388806769223 0.031945351511240005
21 109 0.036038730903312076 0.037149413359990724 0.050144873559474945
22 36 0.05406548222590799 0.04506210159474395 0.021195339038968086
23 117 0.018320937721935774 0.024208558825179707 0.011437908
24 78 0.04159588633530323 0.03890666603778386 0.032308947294950485
25 4 0.027259469129501897 0.027721723340794317 0.006535948
26 73 0.018320937721935774 0.024208558825179707 0.019607843
27 26 0.06757869907213537 0.0656233068217385 0.109477124
28 132 0.018320937721935774 0.02264076249153568 0.004901961
29 60 0.03125307463526839 0.036466635389899096 0.05469038337469101

56
results/customStudy/custom_Ind/specialCases/df_pred-test_lgbm_VA.S_post_VA.S_post.csv
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@ -1,29 +1,29 @@
;VA.S_post_pred;VA.S_post_test
135;0.3856540425219162;0.39814651012420654
66;0.1820317685516569;0.179540709812109
31;0.09500056013237226;0.103340292275574
118;0.4109125647914376;0.536534446764092
42;0.3856540425219162;0.39814651012420654
12;0.18261806302989889;0.177800974251914
51;0.10268324709709578;0.0723729993041058
68;0.1796872094731296;0.17571329157968
126;0.4477433077604814;1.0
55;0.14072484000067353;0.159011830201809
112;0.29733352042822303;0.283228949199722
130;0.15674750982777283;0.0949895615866388
80;0.28089946791987636;0.251913709116214
19;0.30881229269932087;0.282533054975644
86;0.26250097642533193;0.14294157922267914
69;0.2070460948787779;0.211899791231733
11;0.17120079373894959;0.178844815588031
27;0.1924398089521744;0.17223382045929
134;0.3856540425219162;0.39814651012420654
109;0.24717340450649433;0.224425887265136
36;0.3498188867479469;0.331593597773139
117;0.15631651482067102;0.156576200417537
78;0.40182931980868064;0.616910229645094
4;0.3112146833258589;0.279053583855254
73;0.142318495823758;0.157620041753653
26;0.19001386932573935;0.203201113430759
132;0.3723563099639571;0.26920539140701294
60;0.3845162666647124;0.532707028531663
135;0.385500448636552;0.39814651012420654
66;0.18361857228389147;0.179540709812109
31;0.0961196859691149;0.103340292275574
118;0.4110692465600275;0.536534446764092
42;0.385500448636552;0.39814651012420654
12;0.1839108952936488;0.177800974251914
51;0.10331121889546636;0.0723729993041058
68;0.1785363434895466;0.17571329157968
126;0.4484969563195786;1.0
55;0.1415834968056925;0.159011830201809
112;0.29850332568702925;0.283228949199722
130;0.1582858815274922;0.0949895615866388
80;0.2805258389632739;0.251913709116214
19;0.30866283622042606;0.282533054975644
86;0.2612552887481758;0.14294157922267914
69;0.20566068781178762;0.211899791231733
11;0.1717199680091557;0.178844815588031
27;0.19370089209618901;0.17223382045929
134;0.385500448636552;0.39814651012420654
109;0.24845779962939202;0.224425887265136
36;0.351258707727789;0.331593597773139
117;0.1561848599542454;0.156576200417537
78;0.40183375038248215;0.616910229645094
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73;0.1420770914748939;0.157620041753653
26;0.19105278111285454;0.203201113430759
132;0.37261682999483037;0.26920539140701294
60;0.3833830518702266;0.532707028531663

1 VA.S_post_pred VA.S_post_test
2 135 0.3856540425219162 0.385500448636552 0.39814651012420654
3 66 0.1820317685516569 0.18361857228389147 0.179540709812109
4 31 0.09500056013237226 0.0961196859691149 0.103340292275574
5 118 0.4109125647914376 0.4110692465600275 0.536534446764092
6 42 0.3856540425219162 0.385500448636552 0.39814651012420654
7 12 0.18261806302989889 0.1839108952936488 0.177800974251914
8 51 0.10268324709709578 0.10331121889546636 0.0723729993041058
9 68 0.1796872094731296 0.1785363434895466 0.17571329157968
10 126 0.4477433077604814 0.4484969563195786 1.0
11 55 0.14072484000067353 0.1415834968056925 0.159011830201809
12 112 0.29733352042822303 0.29850332568702925 0.283228949199722
13 130 0.15674750982777283 0.1582858815274922 0.0949895615866388
14 80 0.28089946791987636 0.2805258389632739 0.251913709116214
15 19 0.30881229269932087 0.30866283622042606 0.282533054975644
16 86 0.26250097642533193 0.2612552887481758 0.14294157922267914
17 69 0.2070460948787779 0.20566068781178762 0.211899791231733
18 11 0.17120079373894959 0.1717199680091557 0.178844815588031
19 27 0.1924398089521744 0.19370089209618901 0.17223382045929
20 134 0.3856540425219162 0.385500448636552 0.39814651012420654
21 109 0.24717340450649433 0.24845779962939202 0.224425887265136
22 36 0.3498188867479469 0.351258707727789 0.331593597773139
23 117 0.15631651482067102 0.1561848599542454 0.156576200417537
24 78 0.40182931980868064 0.40183375038248215 0.616910229645094
25 4 0.3112146833258589 0.3113394389917802 0.279053583855254
26 73 0.142318495823758 0.1420770914748939 0.157620041753653
27 26 0.19001386932573935 0.19105278111285454 0.203201113430759
28 132 0.3723563099639571 0.37261682999483037 0.26920539140701294
29 60 0.3845162666647124 0.3833830518702266 0.532707028531663

56
results/customStudy/custom_Ind/specialCases/df_pred-test_rf_DHPAA.GG_urine_post_DHPAA.GG_urine_post.csv
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@ -1,29 +1,29 @@
;DHPAA.GG_urine_post_pred;DHPAA.GG_urine_post_test
135;0.031273110190910364;0.02306918427348137
66;0.03145485430803648;0.02124183
31;0.01765842710094761;0.011437908
118;0.04195940158403984;0.049019608
42;0.03142314200243451;0.02283056080341339
12;0.0377685457829103;0.06341682374477386
51;0.07098040480298232;0.081699346
68;0.020870417506442494;0.013071895
126;0.03283576057480141;0.03025123104453087
55;0.022325100615161547;0.022875817
112;0.03705067103943467;0.038646358996629715
130;0.04507897043507233;0.058823529
80;0.029334536335621445;0.02044045552611351
19;0.07895820794032689;0.091503268
86;0.07592136790440752;0.088235294
69;0.05038106270314998;0.016339869
11;0.0364069806867011;0.041303522884845734
27;0.042261517999367705;0.032679739
134;0.04181352141882766;0.031945351511240005
109;0.029714568217147713;0.050144873559474945
36;0.03668268442589102;0.021195339038968086
117;0.024357621131988083;0.011437908
78;0.04948888001872687;0.032308947294950485
4;0.02368186276767989;0.006535948
73;0.018124506751902702;0.019607843
26;0.08721752947338282;0.109477124
132;0.014476640958512664;0.004901961
60;0.027154709682683038;0.05469038337469101
135;0.037553188293868445;0.02306918427348137
66;0.040778807790800814;0.02124183
31;0.038155788698642584;0.011437908
118;0.04245305023138848;0.049019608
42;0.03906940211722372;0.02283056080341339
12;0.04060928915499565;0.06341682374477386
51;0.04610165401111834;0.081699346
68;0.038478463360670866;0.013071895
126;0.038164470578119;0.03025123104453087
55;0.03675932961797219;0.022875817
112;0.03870953243588764;0.038646358996629715
130;0.04621513620995086;0.058823529
80;0.038176350013032594;0.02044045552611351
19;0.04807546352057312;0.091503268
86;0.0461577077052454;0.088235294
69;0.04477047582836725;0.016339869
11;0.03886134286902194;0.041303522884845734
27;0.041649221287857884;0.032679739
134;0.03924745230471296;0.031945351511240005
109;0.039236028226304495;0.050144873559474945
36;0.04044142278036775;0.021195339038968086
117;0.03953446151854473;0.011437908
78;0.04120798002719795;0.032308947294950485
4;0.03985030827936556;0.006535948
73;0.037386597999999924;0.019607843
26;0.046893613177505025;0.109477124
132;0.037103359895445186;0.004901961
60;0.03765075006523226;0.05469038337469101

1 DHPAA.GG_urine_post_pred DHPAA.GG_urine_post_test
2 135 0.031273110190910364 0.037553188293868445 0.02306918427348137
3 66 0.03145485430803648 0.040778807790800814 0.02124183
4 31 0.01765842710094761 0.038155788698642584 0.011437908
5 118 0.04195940158403984 0.04245305023138848 0.049019608
6 42 0.03142314200243451 0.03906940211722372 0.02283056080341339
7 12 0.0377685457829103 0.04060928915499565 0.06341682374477386
8 51 0.07098040480298232 0.04610165401111834 0.081699346
9 68 0.020870417506442494 0.038478463360670866 0.013071895
10 126 0.03283576057480141 0.038164470578119 0.03025123104453087
11 55 0.022325100615161547 0.03675932961797219 0.022875817
12 112 0.03705067103943467 0.03870953243588764 0.038646358996629715
13 130 0.04507897043507233 0.04621513620995086 0.058823529
14 80 0.029334536335621445 0.038176350013032594 0.02044045552611351
15 19 0.07895820794032689 0.04807546352057312 0.091503268
16 86 0.07592136790440752 0.0461577077052454 0.088235294
17 69 0.05038106270314998 0.04477047582836725 0.016339869
18 11 0.0364069806867011 0.03886134286902194 0.041303522884845734
19 27 0.042261517999367705 0.041649221287857884 0.032679739
20 134 0.04181352141882766 0.03924745230471296 0.031945351511240005
21 109 0.029714568217147713 0.039236028226304495 0.050144873559474945
22 36 0.03668268442589102 0.04044142278036775 0.021195339038968086
23 117 0.024357621131988083 0.03953446151854473 0.011437908
24 78 0.04948888001872687 0.04120798002719795 0.032308947294950485
25 4 0.02368186276767989 0.03985030827936556 0.006535948
26 73 0.018124506751902702 0.037386597999999924 0.019607843
27 26 0.08721752947338282 0.046893613177505025 0.109477124
28 132 0.014476640958512664 0.037103359895445186 0.004901961
29 60 0.027154709682683038 0.03765075006523226 0.05469038337469101

56
results/customStudy/custom_Ind/specialCases/df_pred-test_rf_VA.S_post_VA.S_post.csv
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@ -1,29 +1,29 @@
;VA.S_post_pred;VA.S_post_test
135;0.3777733238510637;0.39814651012420654
66;0.2295859566079087;0.179540709812109
31;0.17085845085143272;0.103340292275574
118;0.47819910002193927;0.536534446764092
42;0.3920482403870007;0.39814651012420654
12;0.18721629507048224;0.177800974251914
51;0.14784595676779108;0.0723729993041058
68;0.20366391781796678;0.17571329157968
126;0.4627053571344643;1.0
55;0.15880194207735832;0.159011830201809
112;0.2782131437541021;0.283228949199722
130;0.30317636237545054;0.0949895615866388
80;0.289299486043098;0.251913709116214
19;0.2407923468256168;0.282533054975644
86;0.23815393602134982;0.14294157922267914
69;0.2014224425325397;0.211899791231733
11;0.21277665207793675;0.178844815588031
27;0.2029479530718343;0.17223382045929
134;0.3777733238510637;0.39814651012420654
109;0.3156291944544935;0.224425887265136
36;0.30806962701332347;0.331593597773139
117;0.20823083572217962;0.156576200417537
78;0.3983591457155721;0.616910229645094
4;0.24678185142233666;0.279053583855254
73;0.19202459194875676;0.157620041753653
26;0.2262721234028612;0.203201113430759
132;0.31789609961575716;0.26920539140701294
60;0.39152947533099897;0.532707028531663
135;0.3946924219288389;0.39814651012420654
66;0.221443003592149;0.179540709812109
31;0.16109214936714855;0.103340292275574
118;0.4927798599742769;0.536534446764092
42;0.3965474831304857;0.39814651012420654
12;0.18850407230696486;0.177800974251914
51;0.14791923525540013;0.0723729993041058
68;0.20022588191444948;0.17571329157968
126;0.5052335994941991;1.0
55;0.1625567019610433;0.159011830201809
112;0.2768080142721624;0.283228949199722
130;0.2799027771551335;0.0949895615866388
80;0.2943017372558495;0.251913709116214
19;0.25413374880963197;0.282533054975644
86;0.2502207364065027;0.14294157922267914
69;0.2095131079720009;0.211899791231733
11;0.21397126468016567;0.178844815588031
27;0.21919140640445686;0.17223382045929
134;0.3946924219288389;0.39814651012420654
109;0.3191924566461595;0.224425887265136
36;0.29763081410261455;0.331593597773139
117;0.198058935595224;0.156576200417537
78;0.41856986393365647;0.616910229645094
4;0.23654145653427608;0.279053583855254
73;0.18882562581149895;0.157620041753653
26;0.21854601699700113;0.203201113430759
132;0.3208090401514642;0.26920539140701294
60;0.4207355338489917;0.532707028531663

1 VA.S_post_pred VA.S_post_test
2 135 0.3777733238510637 0.3946924219288389 0.39814651012420654
3 66 0.2295859566079087 0.221443003592149 0.179540709812109
4 31 0.17085845085143272 0.16109214936714855 0.103340292275574
5 118 0.47819910002193927 0.4927798599742769 0.536534446764092
6 42 0.3920482403870007 0.3965474831304857 0.39814651012420654
7 12 0.18721629507048224 0.18850407230696486 0.177800974251914
8 51 0.14784595676779108 0.14791923525540013 0.0723729993041058
9 68 0.20366391781796678 0.20022588191444948 0.17571329157968
10 126 0.4627053571344643 0.5052335994941991 1.0
11 55 0.15880194207735832 0.1625567019610433 0.159011830201809
12 112 0.2782131437541021 0.2768080142721624 0.283228949199722
13 130 0.30317636237545054 0.2799027771551335 0.0949895615866388
14 80 0.289299486043098 0.2943017372558495 0.251913709116214
15 19 0.2407923468256168 0.25413374880963197 0.282533054975644
16 86 0.23815393602134982 0.2502207364065027 0.14294157922267914
17 69 0.2014224425325397 0.2095131079720009 0.211899791231733
18 11 0.21277665207793675 0.21397126468016567 0.178844815588031
19 27 0.2029479530718343 0.21919140640445686 0.17223382045929
20 134 0.3777733238510637 0.3946924219288389 0.39814651012420654
21 109 0.3156291944544935 0.3191924566461595 0.224425887265136
22 36 0.30806962701332347 0.29763081410261455 0.331593597773139
23 117 0.20823083572217962 0.198058935595224 0.156576200417537
24 78 0.3983591457155721 0.41856986393365647 0.616910229645094
25 4 0.24678185142233666 0.23654145653427608 0.279053583855254
26 73 0.19202459194875676 0.18882562581149895 0.157620041753653
27 26 0.2262721234028612 0.21854601699700113 0.203201113430759
28 132 0.31789609961575716 0.3208090401514642 0.26920539140701294
29 60 0.39152947533099897 0.4207355338489917 0.532707028531663

56
results/customStudy/custom_Ind/specialCases/df_pred-test_xgb_DHPAA.GG_urine_post_DHPAA.GG_urine_post.csv
View file

@ -1,29 +1,29 @@
;DHPAA.GG_urine_post_pred;DHPAA.GG_urine_post_test
135;0.031462133;0.02306918427348137
66;0.02905063;0.02124183
31;0.017424105;0.011437908
118;0.04723146;0.049019608
42;0.027945299;0.02283056080341339
12;0.041838914;0.06341682374477386
51;0.07040258;0.081699346
68;0.029148411;0.013071895
126;0.034234293;0.03025123104453087
55;0.020864855;0.022875817
112;0.04168502;0.038646358996629715
130;0.04384079;0.058823529
80;0.025912791;0.02044045552611351
19;0.07090839;0.091503268
86;0.07661374;0.088235294
69;0.043188192;0.016339869
11;0.021142017;0.041303522884845734
27;0.049644094;0.032679739
134;0.043581855;0.031945351511240005
109;0.02959964;0.050144873559474945
36;0.042403404;0.021195339038968086
117;0.020200256;0.011437908
78;0.04311989;0.032308947294950485
4;0.028928952;0.006535948
73;0.015874023;0.019607843
26;0.08626201;0.109477124
132;0.013017364;0.004901961
60;0.020769069;0.05469038337469101
135;0.027389245;0.02306918427348137
66;0.02513856;0.02124183
31;0.01768276;0.011437908
118;0.04655544;0.049019608
42;0.02635246;0.02283056080341339
12;0.03986755;0.06341682374477386
51;0.06773295;0.081699346
68;0.02751248;0.013071895
126;0.03271338;0.03025123104453087
55;0.020317791;0.022875817
112;0.041316237;0.038646358996629715
130;0.041092914;0.058823529
80;0.026260871;0.02044045552611351
19;0.07303434;0.091503268
86;0.07757345;0.088235294
69;0.043977354;0.016339869
11;0.023169218;0.041303522884845734
27;0.047907326;0.032679739
134;0.045868084;0.031945351511240005
109;0.028912274;0.050144873559474945
36;0.046101093;0.021195339038968086
117;0.019773476;0.011437908
78;0.04709622;0.032308947294950485
4;0.025903573;0.006535948
73;0.016646996;0.019607843
26;0.09017229;0.109477124
132;0.008872973;0.004901961
60;0.017915584;0.05469038337469101

1 DHPAA.GG_urine_post_pred DHPAA.GG_urine_post_test
2 135 0.031462133 0.027389245 0.02306918427348137
3 66 0.02905063 0.02513856 0.02124183
4 31 0.017424105 0.01768276 0.011437908
5 118 0.04723146 0.04655544 0.049019608
6 42 0.027945299 0.02635246 0.02283056080341339
7 12 0.041838914 0.03986755 0.06341682374477386
8 51 0.07040258 0.06773295 0.081699346
9 68 0.029148411 0.02751248 0.013071895
10 126 0.034234293 0.03271338 0.03025123104453087
11 55 0.020864855 0.020317791 0.022875817
12 112 0.04168502 0.041316237 0.038646358996629715
13 130 0.04384079 0.041092914 0.058823529
14 80 0.025912791 0.026260871 0.02044045552611351
15 19 0.07090839 0.07303434 0.091503268
16 86 0.07661374 0.07757345 0.088235294
17 69 0.043188192 0.043977354 0.016339869
18 11 0.021142017 0.023169218 0.041303522884845734
19 27 0.049644094 0.047907326 0.032679739
20 134 0.043581855 0.045868084 0.031945351511240005
21 109 0.02959964 0.028912274 0.050144873559474945
22 36 0.042403404 0.046101093 0.021195339038968086
23 117 0.020200256 0.019773476 0.011437908
24 78 0.04311989 0.04709622 0.032308947294950485
25 4 0.028928952 0.025903573 0.006535948
26 73 0.015874023 0.016646996 0.019607843
27 26 0.08626201 0.09017229 0.109477124
28 132 0.013017364 0.008872973 0.004901961
29 60 0.020769069 0.017915584 0.05469038337469101

56
results/customStudy/custom_Ind/specialCases/df_pred-test_xgb_VA.S_post_VA.S_post.csv
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@ -1,29 +1,29 @@
;VA.S_post_pred;VA.S_post_test
135;0.39736453;0.39814651012420654
66;0.17058298;0.179540709812109
31;0.08955078;0.103340292275574
118;0.48255712;0.536534446764092
42;0.3974191;0.39814651012420654
12;0.17535107;0.177800974251914
51;0.082894;0.0723729993041058
68;0.21463375;0.17571329157968
126;0.5112201;1.0
55;0.15372284;0.159011830201809
112;0.26576737;0.283228949199722
130;0.12122539;0.0949895615866388
80;0.23488523;0.251913709116214
19;0.28017506;0.282533054975644
86;0.18157113;0.14294157922267914
69;0.2018286;0.211899791231733
11;0.17589235;0.178844815588031
27;0.1840144;0.17223382045929
134;0.39736453;0.39814651012420654
109;0.2519063;0.224425887265136
36;0.31645885;0.331593597773139
117;0.16063862;0.156576200417537
78;0.5179117;0.616910229645094
4;0.21262856;0.279053583855254
73;0.15488961;0.157620041753653
26;0.22001734;0.203201113430759
132;0.24209619;0.26920539140701294
60;0.65157264;0.532707028531663
135;0.39767593;0.39814651012420654
66;0.17780803;0.179540709812109
31;0.08723728;0.103340292275574
118;0.48351088;0.536534446764092
42;0.3977155;0.39814651012420654
12;0.17717981;0.177800974251914
51;0.08128439;0.0723729993041058
68;0.20843603;0.17571329157968
126;0.5020346;1.0
55;0.1564021;0.159011830201809
112;0.27660555;0.283228949199722
130;0.10848338;0.0949895615866388
80;0.24401306;0.251913709116214
19;0.28145182;0.282533054975644
86;0.18691841;0.14294157922267914
69;0.20575415;0.211899791231733
11;0.17768946;0.178844815588031
27;0.17685115;0.17223382045929
134;0.39767593;0.39814651012420654
109;0.24084073;0.224425887265136
36;0.31303984;0.331593597773139
117;0.16038324;0.156576200417537
78;0.5008291;0.616910229645094
4;0.20912644;0.279053583855254
73;0.15673827;0.157620041753653
26;0.22065607;0.203201113430759
132;0.23289388;0.26920539140701294
60;0.6711741;0.532707028531663

1 VA.S_post_pred VA.S_post_test
2 135 0.39736453 0.39767593 0.39814651012420654
3 66 0.17058298 0.17780803 0.179540709812109
4 31 0.08955078 0.08723728 0.103340292275574
5 118 0.48255712 0.48351088 0.536534446764092
6 42 0.3974191 0.3977155 0.39814651012420654
7 12 0.17535107 0.17717981 0.177800974251914
8 51 0.082894 0.08128439 0.0723729993041058
9 68 0.21463375 0.20843603 0.17571329157968
10 126 0.5112201 0.5020346 1.0
11 55 0.15372284 0.1564021 0.159011830201809
12 112 0.26576737 0.27660555 0.283228949199722
13 130 0.12122539 0.10848338 0.0949895615866388
14 80 0.23488523 0.24401306 0.251913709116214
15 19 0.28017506 0.28145182 0.282533054975644
16 86 0.18157113 0.18691841 0.14294157922267914
17 69 0.2018286 0.20575415 0.211899791231733
18 11 0.17589235 0.17768946 0.178844815588031
19 27 0.1840144 0.17685115 0.17223382045929
20 134 0.39736453 0.39767593 0.39814651012420654
21 109 0.2519063 0.24084073 0.224425887265136
22 36 0.31645885 0.31303984 0.331593597773139
23 117 0.16063862 0.16038324 0.156576200417537
24 78 0.5179117 0.5008291 0.616910229645094
25 4 0.21262856 0.20912644 0.279053583855254
26 73 0.15488961 0.15673827 0.157620041753653
27 26 0.22001734 0.22065607 0.203201113430759
28 132 0.24209619 0.23289388 0.26920539140701294
29 60 0.65157264 0.6711741 0.532707028531663

10
results/customStudy/custom_Ind/specialCases/metrics_DHPAA.GG_urine_post_lgbm_DHPAA.GG_urine_post.csv
View file

@ -1,8 +1,8 @@
index;Value
target;DHPAA.GG_urine_post
method;lgbm_DHPAA.GG_urine_post
r2;0.6321800511692435
mae;0.01322630609274777
mse;0.0002716411701154974
mape;0.5937794803254899
ev;0.6324661040098283
r2;0.6298818349091119
mae;0.013202296856319634
mse;0.00027333844117451725
mape;0.6376060162626062
ev;0.6306294758357183

1 index Value
2 target DHPAA.GG_urine_post
3 method lgbm_DHPAA.GG_urine_post
4 r2 0.6321800511692435 0.6298818349091119
5 mae 0.01322630609274777 0.013202296856319634
6 mse 0.0002716411701154974 0.00027333844117451725
7 mape 0.5937794803254899 0.6376060162626062
8 ev 0.6324661040098283 0.6306294758357183

10
results/customStudy/custom_Ind/specialCases/metrics_DHPAA.GG_urine_post_rf_DHPAA.GG_urine_post.csv
View file

@ -1,8 +1,8 @@
index;Value
target;DHPAA.GG_urine_post
method;rf_DHPAA.GG_urine_post
r2;0.7153104415478325
mae;0.01211031209267511
mse;0.00021024798960317991
mape;0.5389835080915979
ev;0.7158407698133342
r2;0.1582359952770762
mae;0.02079565013325713
mse;0.0006216567642155086
mape;1.0709657592804676
ev;0.16673732869228586

1 index Value
2 target DHPAA.GG_urine_post
3 method rf_DHPAA.GG_urine_post
4 r2 0.7153104415478325 0.1582359952770762
5 mae 0.01211031209267511 0.02079565013325713
6 mse 0.00021024798960317991 0.0006216567642155086
7 mape 0.5389835080915979 1.0709657592804676
8 ev 0.7158407698133342 0.16673732869228586

10
results/customStudy/custom_Ind/specialCases/metrics_DHPAA.GG_urine_post_xgb_DHPAA.GG_urine_post.csv
View file

@ -1,8 +1,8 @@
index;Value
target;DHPAA.GG_urine_post
method;xgb_DHPAA.GG_urine_post
r2;0.672220639822841
mae;0.01314507662885431
mse;0.0002420705272274436
mape;0.5725399904527851
ev;0.6722345480353836
r2;0.6675471221887801
mae;0.01283350851554431
mse;0.00024552199798836156
mape;0.5189156701463661
ev;0.6680045970593769

1 index Value
2 target DHPAA.GG_urine_post
3 method xgb_DHPAA.GG_urine_post
4 r2 0.672220639822841 0.6675471221887801
5 mae 0.01314507662885431 0.01283350851554431
6 mse 0.0002420705272274436 0.00024552199798836156
7 mape 0.5725399904527851 0.5189156701463661
8 ev 0.6722345480353836 0.6680045970593769

10
results/customStudy/custom_Ind/specialCases/metrics_VA.S_post_lgbm_VA.S_post.csv
View file

@ -1,8 +1,8 @@
index;Value
target;VA.S_post
method;lgbm_VA.S_post
r2;0.5942984537720181
mae;0.05840252157288433
mse;0.01514590421303627
mape;0.17611546600375563
ev;0.6090790308599667
r2;0.5946794090988993
mae;0.05863711277761579
mse;0.015131682150182344
mape;0.17731311116070936
ev;0.6090686803238197

1 index Value
2 target VA.S_post
3 method lgbm_VA.S_post
4 r2 0.5942984537720181 0.5946794090988993
5 mae 0.05840252157288433 0.05863711277761579
6 mse 0.01514590421303627 0.015131682150182344
7 mape 0.17611546600375563 0.17731311116070936
8 ev 0.6090790308599667 0.6090686803238197

10
results/customStudy/custom_Ind/specialCases/metrics_VA.S_post_rf_VA.S_post.csv
View file

@ -1,8 +1,8 @@
index;Value
target;VA.S_post
method;rf_VA.S_post
r2;0.5707264348940158
mae;0.07143929096472698
mse;0.01602590958485085
mape;0.30699726553302753
ev;0.5725430320175894
r2;0.6369866753160623
mae;0.06557323965169486
mse;0.013552240790891856
mape;0.2879839093526525
ev;0.6373705153563713

1 index Value
2 target VA.S_post
3 method rf_VA.S_post
4 r2 0.5707264348940158 0.6369866753160623
5 mae 0.07143929096472698 0.06557323965169486
6 mse 0.01602590958485085 0.013552240790891856
7 mape 0.30699726553302753 0.2879839093526525
8 ev 0.5725430320175894 0.6373705153563713

10
results/customStudy/custom_Ind/specialCases/metrics_VA.S_post_xgb_VA.S_post.csv
View file

@ -1,8 +1,8 @@
index;Value
target;VA.S_post
method;xgb_VA.S_post
r2;0.734865384893162
mae;0.040325589676149964
mse;0.009898171503915842
mape;0.1080470427189779
ev;0.7449203977422081
r2;0.7184813914642618
mae;0.03992697589754178
mse;0.010509829007832996
mape;0.09800024705606505
ev;0.7291279997059905

1 index Value
2 target VA.S_post
3 method xgb_VA.S_post
4 r2 0.734865384893162 0.7184813914642618
5 mae 0.040325589676149964 0.03992697589754178
6 mse 0.009898171503915842 0.010509829007832996
7 mape 0.1080470427189779 0.09800024705606505
8 ev 0.7449203977422081 0.7291279997059905

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29
results/test_cases/df_pred-test_lgbm_N.G_urine_post_N.G_urine_post.csv Normal file
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@ -0,0 +1,29 @@
;N.G_urine_post_pred;N.G_urine_post_test
135;0.06316971751810099;0.0529247320444273
66;0.013792022506882586;0.0108796802732645
31;0.05523039205689354;0.0515449616724398
118;0.20818952109297018;0.188107995633296
42;0.043906763224113146;0.0506626188659772
12;0.014415268226797565;0.0113548568210471
51;0.09103335302521662;0.0951333511997158
68;0.20085444534853159;0.171557659924219
126;0.14368360286909895;0.119485276352258
55;0.07446719153475265;0.0667875239596586
112;0.16063613226758033;0.123815203264847
130;0.17160305297963588;0.154488505725275
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86;0.054716474913225885;0.055175352947481
69;0.019530519656531336;0.0217994520873827
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134;0.05122849849068828;0.0413891896435029
109;0.16684896474655822;0.125418620172573
36;0.011198247208830935;0.0099228939919132
117;0.05791686369224038;0.0513273823920579
78;0.04045707239876587;0.043477623740852
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73;0.07128237673643059;0.0794711130589172
26;0.018897099172063638;0.0265467369144264
132;0.07957046664213537;0.0735684560429879
60;0.14378265080792801;0.16638741325803
1 N.G_urine_post_pred N.G_urine_post_test
2 135 0.06316971751810099 0.0529247320444273
3 66 0.013792022506882586 0.0108796802732645
4 31 0.05523039205689354 0.0515449616724398
5 118 0.20818952109297018 0.188107995633296
6 42 0.043906763224113146 0.0506626188659772
7 12 0.014415268226797565 0.0113548568210471
8 51 0.09103335302521662 0.0951333511997158
9 68 0.20085444534853159 0.171557659924219
10 126 0.14368360286909895 0.119485276352258
11 55 0.07446719153475265 0.0667875239596586
12 112 0.16063613226758033 0.123815203264847
13 130 0.17160305297963588 0.154488505725275
14 80 0.011198247208830935 0.0076095576685619
15 19 0.19994384668421197 0.272844194500416
16 86 0.054716474913225885 0.055175352947481
17 69 0.019530519656531336 0.0217994520873827
18 11 0.04940790670686008 0.0429014736388349
19 27 0.04315215126119766 0.0376318042074121
20 134 0.05122849849068828 0.0413891896435029
21 109 0.16684896474655822 0.125418620172573
22 36 0.011198247208830935 0.0099228939919132
23 117 0.05791686369224038 0.0513273823920579
24 78 0.04045707239876587 0.043477623740852
25 4 0.08311468581966737 0.013261781074106693
26 73 0.07128237673643059 0.0794711130589172
27 26 0.018897099172063638 0.0265467369144264
28 132 0.07957046664213537 0.0735684560429879
29 60 0.14378265080792801 0.16638741325803

29
results/test_cases/df_pred-test_lgbm_VA.GG_plasm_post_VA.GG_plasm_post.csv Normal file
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@ -0,0 +1,29 @@
;VA.GG_plasm_post_pred;VA.GG_plasm_post_test
135;0.3675569775176365;0.22367295622825623
66;0.20880638506151786;0.206263498920086
31;0.09626388622126326;0.0706361672884351
118;0.22667863192002272;0.178283919104653
42;0.30650084142689904;0.22367295622825623
12;0.1468069830679748;0.137885332809739
51;0.16031137508495322;0.148439033968192
68;0.12578172033130475;0.125073630473198
126;0.18407547793414508;0.121735715688199
55;0.17967446564480133;0.170724523856273
112;0.3291373134463038;0.26595326919301
130;0.34132683341924486;0.277243275083448
80;0.1298236642992269;0.121833889652464
19;0.4161805409094215;0.80458472413116
86;0.42555622870271104;0.418613783624583
69;0.228488130794637;0.255890437855881
11;0.1519497055221712;0.13665815825643
27;0.28996262724504;0.26678774788926
134;0.3675569775176365;0.22367295622825623
109;0.256291841915976;0.224082073434125
36;0.18656438325085603;0.18304535637149
117;0.25827159032062225;0.248281955625368
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4;0.096810669781396;0.0595915963086589
73;0.21249922016033107;0.21367563322207
26;0.10607383209288813;0.0626349892008639
132;0.4538231229772207;0.363390928725702
60;0.10479210404670126;0.0780973885725506
1 VA.GG_plasm_post_pred VA.GG_plasm_post_test
2 135 0.3675569775176365 0.22367295622825623
3 66 0.20880638506151786 0.206263498920086
4 31 0.09626388622126326 0.0706361672884351
5 118 0.22667863192002272 0.178283919104653
6 42 0.30650084142689904 0.22367295622825623
7 12 0.1468069830679748 0.137885332809739
8 51 0.16031137508495322 0.148439033968192
9 68 0.12578172033130475 0.125073630473198
10 126 0.18407547793414508 0.121735715688199
11 55 0.17967446564480133 0.170724523856273
12 112 0.3291373134463038 0.26595326919301
13 130 0.34132683341924486 0.277243275083448
14 80 0.1298236642992269 0.121833889652464
15 19 0.4161805409094215 0.80458472413116
16 86 0.42555622870271104 0.418613783624583
17 69 0.228488130794637 0.255890437855881
18 11 0.1519497055221712 0.13665815825643
19 27 0.28996262724504 0.26678774788926
20 134 0.3675569775176365 0.22367295622825623
21 109 0.256291841915976 0.224082073434125
22 36 0.18656438325085603 0.18304535637149
23 117 0.25827159032062225 0.248281955625368
24 78 0.11524148511966276 0.105684272530925
25 4 0.096810669781396 0.0595915963086589
26 73 0.21249922016033107 0.21367563322207
27 26 0.10607383209288813 0.0626349892008639
28 132 0.4538231229772207 0.363390928725702
29 60 0.10479210404670126 0.0780973885725506

29
results/test_cases/df_pred-test_rf_N.G_urine_post_N.G_urine_post.csv Normal file
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@ -0,0 +1,29 @@
;N.G_urine_post_pred;N.G_urine_post_test
135;0.05086441795509831;0.0529247320444273
66;0.021707216044258813;0.0108796802732645
31;0.05098110320416847;0.0515449616724398
118;0.1986947185427742;0.188107995633296
42;0.05086441795509831;0.0506626188659772
12;0.021707216044258813;0.0113548568210471
51;0.09421167215491391;0.0951333511997158
68;0.19809439451540634;0.171557659924219
126;0.13061349446017023;0.119485276352258
55;0.06961352827085382;0.0667875239596586
112;0.13011144183755327;0.123815203264847
130;0.1961190382480418;0.154488505725275
80;0.021707216044258813;0.0076095576685619
19;0.19981856716868593;0.272844194500416
86;0.05111222025963886;0.055175352947481
69;0.021707216044258813;0.0217994520873827
11;0.04878825662552083;0.0429014736388349
27;0.04189297775817049;0.0376318042074121
134;0.0417618607027001;0.0413891896435029
109;0.13020117909587717;0.125418620172573
36;0.021707216044258813;0.0099228939919132
117;0.0509955350105687;0.0513273823920579
78;0.04878825662552083;0.043477623740852
4;0.04934047340042474;0.013261781074106693
73;0.0874994671328377;0.0794711130589172
26;0.021707216044258813;0.0265467369144264
132;0.08453674769358381;0.0735684560429879
60;0.19888167795245607;0.16638741325803
1 N.G_urine_post_pred N.G_urine_post_test
2 135 0.05086441795509831 0.0529247320444273
3 66 0.021707216044258813 0.0108796802732645
4 31 0.05098110320416847 0.0515449616724398
5 118 0.1986947185427742 0.188107995633296
6 42 0.05086441795509831 0.0506626188659772
7 12 0.021707216044258813 0.0113548568210471
8 51 0.09421167215491391 0.0951333511997158
9 68 0.19809439451540634 0.171557659924219
10 126 0.13061349446017023 0.119485276352258
11 55 0.06961352827085382 0.0667875239596586
12 112 0.13011144183755327 0.123815203264847
13 130 0.1961190382480418 0.154488505725275
14 80 0.021707216044258813 0.0076095576685619
15 19 0.19981856716868593 0.272844194500416
16 86 0.05111222025963886 0.055175352947481
17 69 0.021707216044258813 0.0217994520873827
18 11 0.04878825662552083 0.0429014736388349
19 27 0.04189297775817049 0.0376318042074121
20 134 0.0417618607027001 0.0413891896435029
21 109 0.13020117909587717 0.125418620172573
22 36 0.021707216044258813 0.0099228939919132
23 117 0.0509955350105687 0.0513273823920579
24 78 0.04878825662552083 0.043477623740852
25 4 0.04934047340042474 0.013261781074106693
26 73 0.0874994671328377 0.0794711130589172
27 26 0.021707216044258813 0.0265467369144264
28 132 0.08453674769358381 0.0735684560429879
29 60 0.19888167795245607 0.16638741325803

29
results/test_cases/df_pred-test_rf_VA.GG_plasm_post_VA.GG_plasm_post.csv Normal file
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@ -0,0 +1,29 @@
;VA.GG_plasm_post_pred;VA.GG_plasm_post_test
135;0.2648096548101919;0.22367295622825623
66;0.22838976263374067;0.206263498920086
31;0.0916913958159726;0.0706361672884351
118;0.18939543363867273;0.178283919104653
42;0.22959718742787577;0.22367295622825623
12;0.14619379530095397;0.137885332809739
51;0.1505146587722372;0.148439033968192
68;0.12321092578677316;0.125073630473198
126;0.12792176959713214;0.121735715688199
55;0.1713234779273612;0.170724523856273
112;0.2574800490899422;0.26595326919301
130;0.29690459578959827;0.277243275083448
80;0.10358064712836734;0.121833889652464
19;0.5729093335244595;0.80458472413116
86;0.38529063635500455;0.418613783624583
69;0.24519015979397252;0.255890437855881
11;0.14592082270008713;0.13665815825643
27;0.2598637395667415;0.26678774788926
134;0.2648096548101919;0.22367295622825623
109;0.22770611724826684;0.224082073434125
36;0.1984269232378562;0.18304535637149
117;0.240439364527067;0.248281955625368
78;0.0989129401005292;0.105684272530925
4;0.09272521224216553;0.0595915963086589
73;0.23444145682033052;0.21367563322207
26;0.09409132830365827;0.0626349892008639
132;0.34736107338148364;0.363390928725702
60;0.09265630240127486;0.0780973885725506
1 VA.GG_plasm_post_pred VA.GG_plasm_post_test
2 135 0.2648096548101919 0.22367295622825623
3 66 0.22838976263374067 0.206263498920086
4 31 0.0916913958159726 0.0706361672884351
5 118 0.18939543363867273 0.178283919104653
6 42 0.22959718742787577 0.22367295622825623
7 12 0.14619379530095397 0.137885332809739
8 51 0.1505146587722372 0.148439033968192
9 68 0.12321092578677316 0.125073630473198
10 126 0.12792176959713214 0.121735715688199
11 55 0.1713234779273612 0.170724523856273
12 112 0.2574800490899422 0.26595326919301
13 130 0.29690459578959827 0.277243275083448
14 80 0.10358064712836734 0.121833889652464
15 19 0.5729093335244595 0.80458472413116
16 86 0.38529063635500455 0.418613783624583
17 69 0.24519015979397252 0.255890437855881
18 11 0.14592082270008713 0.13665815825643
19 27 0.2598637395667415 0.26678774788926
20 134 0.2648096548101919 0.22367295622825623
21 109 0.22770611724826684 0.224082073434125
22 36 0.1984269232378562 0.18304535637149
23 117 0.240439364527067 0.248281955625368
24 78 0.0989129401005292 0.105684272530925
25 4 0.09272521224216553 0.0595915963086589
26 73 0.23444145682033052 0.21367563322207
27 26 0.09409132830365827 0.0626349892008639
28 132 0.34736107338148364 0.363390928725702
29 60 0.09265630240127486 0.0780973885725506

29
results/test_cases/df_pred-test_xgb_N.G_urine_post_N.G_urine_post.csv Normal file
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@ -0,0 +1,29 @@
;N.G_urine_post_pred;N.G_urine_post_test
135;0.05518442;0.0529247320444273
66;0.0122934105;0.0108796802732645
31;0.05102571;0.0515449616724398
118;0.1894632;0.188107995633296
42;0.044539068;0.0506626188659772
12;0.0102638705;0.0113548568210471
51;0.09550045;0.0951333511997158
68;0.17094064;0.171557659924219
126;0.11742354;0.119485276352258
55;0.06351607;0.0667875239596586
112;0.117554046;0.123815203264847
130;0.15520063;0.154488505725275
80;0.0108091105;0.0076095576685619
19;0.29692876;0.272844194500416
86;0.052918825;0.055175352947481
69;0.022970198;0.0217994520873827
11;0.045403283;0.0429014736388349
27;0.04019478;0.0376318042074121
134;0.04453094;0.0413891896435029
109;0.11813126;0.125418620172573
36;0.011324345;0.0099228939919132
117;0.058518294;0.0513273823920579
78;0.042234477;0.043477623740852
4;0.054109164;0.013261781074106693
73;0.07674072;0.0794711130589172
26;0.028509555;0.0265467369144264
132;0.06684038;0.0735684560429879
60;0.16964237;0.16638741325803
1 N.G_urine_post_pred N.G_urine_post_test
2 135 0.05518442 0.0529247320444273
3 66 0.0122934105 0.0108796802732645
4 31 0.05102571 0.0515449616724398
5 118 0.1894632 0.188107995633296
6 42 0.044539068 0.0506626188659772
7 12 0.0102638705 0.0113548568210471
8 51 0.09550045 0.0951333511997158
9 68 0.17094064 0.171557659924219
10 126 0.11742354 0.119485276352258
11 55 0.06351607 0.0667875239596586
12 112 0.117554046 0.123815203264847
13 130 0.15520063 0.154488505725275
14 80 0.0108091105 0.0076095576685619
15 19 0.29692876 0.272844194500416
16 86 0.052918825 0.055175352947481
17 69 0.022970198 0.0217994520873827
18 11 0.045403283 0.0429014736388349
19 27 0.04019478 0.0376318042074121
20 134 0.04453094 0.0413891896435029
21 109 0.11813126 0.125418620172573
22 36 0.011324345 0.0099228939919132
23 117 0.058518294 0.0513273823920579
24 78 0.042234477 0.043477623740852
25 4 0.054109164 0.013261781074106693
26 73 0.07674072 0.0794711130589172
27 26 0.028509555 0.0265467369144264
28 132 0.06684038 0.0735684560429879
29 60 0.16964237 0.16638741325803

29
results/test_cases/df_pred-test_xgb_VA.GG_plasm_post_VA.GG_plasm_post.csv Normal file
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@ -0,0 +1,29 @@
;VA.GG_plasm_post_pred;VA.GG_plasm_post_test
135;0.2244904;0.22367295622825623
66;0.20138052;0.206263498920086
31;0.06996433;0.0706361672884351
118;0.1778712;0.178283919104653
42;0.2238371;0.22367295622825623
12;0.13481562;0.137885332809739
51;0.1431751;0.148439033968192
68;0.1305776;0.125073630473198
126;0.12506935;0.121735715688199
55;0.1717052;0.170724523856273
112;0.26646265;0.26595326919301
130;0.2698097;0.277243275083448
80;0.12602201;0.121833889652464
19;0.6727942;0.80458472413116
86;0.39973035;0.418613783624583
69;0.24454327;0.255890437855881
11;0.13581507;0.13665815825643
27;0.26988387;0.26678774788926
134;0.2244904;0.22367295622825623
109;0.22349113;0.224082073434125
36;0.1833107;0.18304535637149
117;0.23970571;0.248281955625368
78;0.10431304;0.105684272530925
4;0.055494722;0.0595915963086589
73;0.21229331;0.21367563322207
26;0.0598753;0.0626349892008639
132;0.37697884;0.363390928725702
60;0.07764315;0.0780973885725506
1 VA.GG_plasm_post_pred VA.GG_plasm_post_test
2 135 0.2244904 0.22367295622825623
3 66 0.20138052 0.206263498920086
4 31 0.06996433 0.0706361672884351
5 118 0.1778712 0.178283919104653
6 42 0.2238371 0.22367295622825623
7 12 0.13481562 0.137885332809739
8 51 0.1431751 0.148439033968192
9 68 0.1305776 0.125073630473198
10 126 0.12506935 0.121735715688199
11 55 0.1717052 0.170724523856273
12 112 0.26646265 0.26595326919301
13 130 0.2698097 0.277243275083448
14 80 0.12602201 0.121833889652464
15 19 0.6727942 0.80458472413116
16 86 0.39973035 0.418613783624583
17 69 0.24454327 0.255890437855881
18 11 0.13581507 0.13665815825643
19 27 0.26988387 0.26678774788926
20 134 0.2244904 0.22367295622825623
21 109 0.22349113 0.224082073434125
22 36 0.1833107 0.18304535637149
23 117 0.23970571 0.248281955625368
24 78 0.10431304 0.105684272530925
25 4 0.055494722 0.0595915963086589
26 73 0.21229331 0.21367563322207
27 26 0.0598753 0.0626349892008639
28 132 0.37697884 0.363390928725702
29 60 0.07764315 0.0780973885725506

8
results/test_cases/metrics_N.G_urine_post_lgbm_N.G_urine_post.csv Normal file
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@ -0,0 +1,8 @@
index;Value
target;N.G_urine_post
method;lgbm_N.G_urine_post
r2;0.8573715911694122
mae;0.015487411558224353
mse;0.0005920928096717641
mape;0.35363547256076877
ev;0.867079591533086
1 index Value
2 target N.G_urine_post
3 method lgbm_N.G_urine_post
4 r2 0.8573715911694122
5 mae 0.015487411558224353
6 mse 0.0005920928096717641
7 mape 0.35363547256076877
8 ev 0.867079591533086

8
results/test_cases/metrics_N.G_urine_post_rf_N.G_urine_post.csv Normal file
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@ -0,0 +1,8 @@
index;Value
target;N.G_urine_post
method;rf_N.G_urine_post
r2;0.9027202099704911
mae;0.012155348699758784
mse;0.00040383724865967
mape;0.34990468419411275
ev;0.9114494185446067
1 index Value
2 target N.G_urine_post
3 method rf_N.G_urine_post
4 r2 0.9027202099704911
5 mae 0.012155348699758784
6 mse 0.00040383724865967
7 mape 0.34990468419411275
8 ev 0.9114494185446067

8
results/test_cases/metrics_N.G_urine_post_xgb_N.G_urine_post.csv Normal file
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@ -0,0 +1,8 @@
index;Value
target;N.G_urine_post
method;xgb_N.G_urine_post
r2;0.977919599356779
mae;0.004914908118497069
mse;9.166228918007278e-05
mape;0.1788868464010748
ev;0.9789261610083124
1 index Value
2 target N.G_urine_post
3 method xgb_N.G_urine_post
4 r2 0.977919599356779
5 mae 0.004914908118497069
6 mse 9.166228918007278e-05
7 mape 0.1788868464010748
8 ev 0.9789261610083124

8
results/test_cases/metrics_VA.GG_plasm_post_lgbm_VA.GG_plasm_post.csv Normal file
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@ -0,0 +1,8 @@
index;Value
target;VA.GG_plasm_post
method;lgbm_VA.GG_plasm_post
r2;0.5961953324746384
mae;0.04966652328394555
mse;0.008194788842795198
mape;0.23448883214180147
ev;0.6156738107297529
1 index Value
2 target VA.GG_plasm_post
3 method lgbm_VA.GG_plasm_post
4 r2 0.5961953324746384
5 mae 0.04966652328394555
6 mse 0.008194788842795198
7 mape 0.23448883214180147
8 ev 0.6156738107297529

8
results/test_cases/metrics_VA.GG_plasm_post_rf_VA.GG_plasm_post.csv Normal file
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@ -0,0 +1,8 @@
index;Value
target;VA.GG_plasm_post
method;rf_VA.GG_plasm_post
r2;0.8877926925304193
mae;0.023191421041242714
mse;0.0022771286844376535
mape;0.11939103830122665
ev;0.8878668603106743
1 index Value
2 target VA.GG_plasm_post
3 method rf_VA.GG_plasm_post
4 r2 0.8877926925304193
5 mae 0.023191421041242714
6 mse 0.0022771286844376535
7 mape 0.11939103830122665
8 ev 0.8878668603106743

8
results/test_cases/metrics_VA.GG_plasm_post_xgb_VA.GG_plasm_post.csv Normal file
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@ -0,0 +1,8 @@
index;Value
target;VA.GG_plasm_post
method;xgb_VA.GG_plasm_post
r2;0.9677423751183961
mae;0.008467668652597644
mse;0.0006546343956220804
mape;0.025950829210001865
ev;0.969570912906077
1 index Value
2 target VA.GG_plasm_post
3 method xgb_VA.GG_plasm_post
4 r2 0.9677423751183961
5 mae 0.008467668652597644
6 mse 0.0006546343956220804
7 mape 0.025950829210001865
8 ev 0.969570912906077

29
results/test_cases/prueba_predSex_NG.csv Normal file
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@ -0,0 +1,29 @@
;N.G_urine_post;rf_pred;Sex;Sex
135;0.0529247320444273;0.11519540504720363;MAN;WOMAN
66;0.0108796802732645;0.09304851136931377;MAN;WOMAN
31;0.0515449616724398;0.09060882599096201;MAN;WOMAN
118;0.188107995633296;0.11893231773448086;MAN;WOMAN
42;0.0506626188659772;0.1080303174515295;MAN;WOMAN
12;0.0113548568210471;0.06003421269599896;WOMAN;MAN
51;0.0951333511997158;0.08254920960749518;WOMAN;MAN
68;0.171557659924219;0.08632441569987241;MAN;WOMAN
126;0.119485276352258;0.12468227622326487;MAN;WOMAN
55;0.0667875239596586;0.060723322562127986;WOMAN;MAN
112;0.123815203264847;0.11015349190288186;MAN;WOMAN
130;0.154488505725275;0.08257674486545197;MAN;WOMAN
80;0.0076095576685619;0.07618622051841979;MAN;WOMAN
19;0.272844194500416;0.0762135161502902;WOMAN;MAN
86;0.055175352947481;0.08379362053340524;MAN;WOMAN
69;0.0217994520873827;0.07263459739610198;WOMAN;MAN
11;0.0429014736388349;0.08108463429749654;WOMAN;MAN
27;0.0376318042074121;0.09803989663659543;MAN;WOMAN
134;0.0413891896435029;0.11587611889849395;MAN;WOMAN
109;0.125418620172573;0.09106327242238932;WOMAN;MAN
36;0.0099228939919132;0.0690975224712229;MAN;WOMAN
117;0.0513273823920579;0.10615465513151033;MAN;WOMAN
78;0.043477623740852;0.10260672705226723;MAN;WOMAN
4;0.013261781074106693;0.0625031232480254;WOMAN;MAN
73;0.0794711130589172;0.07350135729410198;MAN;WOMAN
26;0.0265467369144264;0.08369916734464222;MAN;WOMAN
132;0.0735684560429879;0.09645127745879443;MAN;WOMAN
60;0.16638741325803;0.06796166451183494;WOMAN;MAN
1 N.G_urine_post rf_pred Sex Sex
2 135 0.0529247320444273 0.11519540504720363 MAN WOMAN
3 66 0.0108796802732645 0.09304851136931377 MAN WOMAN
4 31 0.0515449616724398 0.09060882599096201 MAN WOMAN
5 118 0.188107995633296 0.11893231773448086 MAN WOMAN
6 42 0.0506626188659772 0.1080303174515295 MAN WOMAN
7 12 0.0113548568210471 0.06003421269599896 WOMAN MAN
8 51 0.0951333511997158 0.08254920960749518 WOMAN MAN
9 68 0.171557659924219 0.08632441569987241 MAN WOMAN
10 126 0.119485276352258 0.12468227622326487 MAN WOMAN
11 55 0.0667875239596586 0.060723322562127986 WOMAN MAN
12 112 0.123815203264847 0.11015349190288186 MAN WOMAN
13 130 0.154488505725275 0.08257674486545197 MAN WOMAN
14 80 0.0076095576685619 0.07618622051841979 MAN WOMAN
15 19 0.272844194500416 0.0762135161502902 WOMAN MAN
16 86 0.055175352947481 0.08379362053340524 MAN WOMAN
17 69 0.0217994520873827 0.07263459739610198 WOMAN MAN
18 11 0.0429014736388349 0.08108463429749654 WOMAN MAN
19 27 0.0376318042074121 0.09803989663659543 MAN WOMAN
20 134 0.0413891896435029 0.11587611889849395 MAN WOMAN
21 109 0.125418620172573 0.09106327242238932 WOMAN MAN
22 36 0.0099228939919132 0.0690975224712229 MAN WOMAN
23 117 0.0513273823920579 0.10615465513151033 MAN WOMAN
24 78 0.043477623740852 0.10260672705226723 MAN WOMAN
25 4 0.013261781074106693 0.0625031232480254 WOMAN MAN
26 73 0.0794711130589172 0.07350135729410198 MAN WOMAN
27 26 0.0265467369144264 0.08369916734464222 MAN WOMAN
28 132 0.0735684560429879 0.09645127745879443 MAN WOMAN
29 60 0.16638741325803 0.06796166451183494 WOMAN MAN

29
results/test_cases/prueba_predSweet.csv Normal file
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@ -0,0 +1,29 @@
;N.G_urine_post_test;xgb_pred;rf_pred;lgbm_pred
135;0.0529247320444273;0.05062977;0.05086441795509831;0.05536898613312216
66;0.0108796802732645;0.0122248735;0.021707216044258813;0.013792022506882586
31;0.0515449616724398;0.054252476;0.05098110320416847;0.06236216017273262
118;0.188107995633296;0.18432674;0.1986947185427742;0.20177542742659058
42;0.0506626188659772;0.050705686;0.05086441795509831;0.05170749460909193
12;0.0113548568210471;0.014794738;0.021707216044258813;0.024495228433606343
51;0.0951333511997158;0.09675295;0.09421167215491391;0.09103335302521662
68;0.171557659924219;0.17246799;0.19809439451540634;0.20085444534853159
126;0.119485276352258;0.116543606;0.13061349446017023;0.13433392303532832
55;0.0667875239596586;0.062937506;0.06961352827085382;0.07446719153475265
112;0.123815203264847;0.11674135;0.13011144183755327;0.1538077310644473
130;0.154488505725275;0.1565769;0.1961190382480418;0.1644712848637967
80;0.0076095576685619;0.010732338;0.021707216044258813;0.011198247208830935
19;0.272844194500416;0.305219;0.19981856716868593;0.2084384198154575
86;0.055175352947481;0.05220163;0.05111222025963886;0.054716474913225885
69;0.0217994520873827;0.022699608;0.021707216044258813;0.019530519656531336
11;0.0429014736388349;0.0484911;0.04878825662552083;0.05591875357517836
27;0.0376318042074121;0.04232392;0.04189297775817049;0.051465623713963446
134;0.0413891896435029;0.040710114;0.0417618607027001;0.04263815075423456
109;0.125418620172573;0.11573715;0.13020117909587717;0.15904823336157933
36;0.0099228939919132;0.01400986;0.021707216044258813;0.019792157569276245
117;0.0513273823920579;0.05450689;0.0509955350105687;0.0491890837027212
78;0.043477623740852;0.040848803;0.04878825662552083;0.04045707239876587
4;0.013261781074106693;0.0688208;0.04934047340042474;0.0926570936587656
73;0.0794711130589172;0.07644528;0.0874994671328377;0.07128237673643059
26;0.0265467369144264;0.028721271;0.021707216044258813;0.026443174824656114
132;0.0735684560429879;0.06396975;0.08453674769358381;0.07243869852629636
60;0.16638741325803;0.17054793;0.19888167795245607;0.14378265080792801
1 N.G_urine_post_test xgb_pred rf_pred lgbm_pred
2 135 0.0529247320444273 0.05062977 0.05086441795509831 0.05536898613312216
3 66 0.0108796802732645 0.0122248735 0.021707216044258813 0.013792022506882586
4 31 0.0515449616724398 0.054252476 0.05098110320416847 0.06236216017273262
5 118 0.188107995633296 0.18432674 0.1986947185427742 0.20177542742659058
6 42 0.0506626188659772 0.050705686 0.05086441795509831 0.05170749460909193
7 12 0.0113548568210471 0.014794738 0.021707216044258813 0.024495228433606343
8 51 0.0951333511997158 0.09675295 0.09421167215491391 0.09103335302521662
9 68 0.171557659924219 0.17246799 0.19809439451540634 0.20085444534853159
10 126 0.119485276352258 0.116543606 0.13061349446017023 0.13433392303532832
11 55 0.0667875239596586 0.062937506 0.06961352827085382 0.07446719153475265
12 112 0.123815203264847 0.11674135 0.13011144183755327 0.1538077310644473
13 130 0.154488505725275 0.1565769 0.1961190382480418 0.1644712848637967
14 80 0.0076095576685619 0.010732338 0.021707216044258813 0.011198247208830935
15 19 0.272844194500416 0.305219 0.19981856716868593 0.2084384198154575
16 86 0.055175352947481 0.05220163 0.05111222025963886 0.054716474913225885
17 69 0.0217994520873827 0.022699608 0.021707216044258813 0.019530519656531336
18 11 0.0429014736388349 0.0484911 0.04878825662552083 0.05591875357517836
19 27 0.0376318042074121 0.04232392 0.04189297775817049 0.051465623713963446
20 134 0.0413891896435029 0.040710114 0.0417618607027001 0.04263815075423456
21 109 0.125418620172573 0.11573715 0.13020117909587717 0.15904823336157933
22 36 0.0099228939919132 0.01400986 0.021707216044258813 0.019792157569276245
23 117 0.0513273823920579 0.05450689 0.0509955350105687 0.0491890837027212
24 78 0.043477623740852 0.040848803 0.04878825662552083 0.04045707239876587
25 4 0.013261781074106693 0.0688208 0.04934047340042474 0.0926570936587656
26 73 0.0794711130589172 0.07644528 0.0874994671328377 0.07128237673643059
27 26 0.0265467369144264 0.028721271 0.021707216044258813 0.026443174824656114
28 132 0.0735684560429879 0.06396975 0.08453674769358381 0.07243869852629636
29 60 0.16638741325803 0.17054793 0.19888167795245607 0.14378265080792801

29
results/test_cases/prueba_predSweet_VA-GG.csv Normal file
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@ -0,0 +1,29 @@
;VA.GG_plasm_post_test;xgb_pred;rf_pred;lgbm_pred;Sweetener;Sweetener
135;0.22367295622825623;0.2238371;0.22981579096947916;0.30650084142689904;SA;SU
66;0.206263498920086;0.20134255;0.22847468724130374;0.2100881131077047;SU;ST
31;0.0706361672884351;0.07773162;0.11443613541674305;0.1575257215640448;ST;SA
118;0.178283919104653;0.17394687;0.1833570461277877;0.18622221767257174;SA;SU
42;0.22367295622825623;0.2244904;0.2648096548101919;0.3675569775176365;ST;SA
12;0.137885332809739;0.13571283;0.1577715828064613;0.18918219215127624;ST;SA
51;0.148439033968192;0.14362201;0.15050042338498731;0.16159310313114006;SU;ST
68;0.125073630473198;0.12953366;0.12296345070672964;0.1270634483774916;SU;ST
126;0.121735715688199;0.12279611;0.10118574401456477;0.13834920175379253;SA;SU
55;0.170724523856273;0.17049621;0.17123432935218058;0.18095619369098817;SU;ST
112;0.26595326919301;0.26535332;0.25789867700850033;0.2886808991988531;SA;SU
130;0.277243275083448;0.27156845;0.2882557625100194;0.30087041917179413;SA;SU
80;0.121833889652464;0.12592441;0.10334448970648809;0.13110539234541374;SU;ST
19;0.80458472413116;0.68981016;0.6320146089840428;0.45663695515687225;ST;SA
86;0.418613783624583;0.3996321;0.38507333598700333;0.42555622870271104;SU;ST
69;0.255890437855881;0.2443824;0.24520298827348516;0.22976985884082385;SU;ST
11;0.13665815825643;0.13180844;0.1625431003840964;0.19432491460547266;ST;SA
27;0.26678774788926;0.26877758;0.261396780338057;0.3291373134463038;ST;SA
134;0.22367295622825623;0.2238371;0.22981579096947916;0.30650084142689904;SA;SU
109;0.224082073434125;0.22379582;0.22782044644681612;0.2158354276685252;SA;SU
36;0.18304535637149;0.18933222;0.20462092522207748;0.22573906945212016;ST;SA
117;0.248281955625368;0.24057306;0.2416160266540426;0.21781517607317152;SA;SU
78;0.105684272530925;0.10530975;0.09866546502048568;0.11652321316584963;SU;ST
4;0.0595915963086589;0.061541352;0.11571682188397216;0.15807250512417753;ST;SA
73;0.21367563322207;0.21226786;0.23433146783788242;0.2137809482065179;SU;ST
26;0.0626349892008639;0.06570398;0.11816879261284292;0.1673356674356697;ST;SA
132;0.363390928725702;0.36349946;0.3292200188396314;0.41336670872977;SA;SU
60;0.0780973885725506;0.0780764;0.09262393622972714;0.10607383209288813;SU;ST
1 VA.GG_plasm_post_test xgb_pred rf_pred lgbm_pred Sweetener Sweetener
2 135 0.22367295622825623 0.2238371 0.22981579096947916 0.30650084142689904 SA SU
3 66 0.206263498920086 0.20134255 0.22847468724130374 0.2100881131077047 SU ST
4 31 0.0706361672884351 0.07773162 0.11443613541674305 0.1575257215640448 ST SA
5 118 0.178283919104653 0.17394687 0.1833570461277877 0.18622221767257174 SA SU
6 42 0.22367295622825623 0.2244904 0.2648096548101919 0.3675569775176365 ST SA
7 12 0.137885332809739 0.13571283 0.1577715828064613 0.18918219215127624 ST SA
8 51 0.148439033968192 0.14362201 0.15050042338498731 0.16159310313114006 SU ST
9 68 0.125073630473198 0.12953366 0.12296345070672964 0.1270634483774916 SU ST
10 126 0.121735715688199 0.12279611 0.10118574401456477 0.13834920175379253 SA SU
11 55 0.170724523856273 0.17049621 0.17123432935218058 0.18095619369098817 SU ST
12 112 0.26595326919301 0.26535332 0.25789867700850033 0.2886808991988531 SA SU
13 130 0.277243275083448 0.27156845 0.2882557625100194 0.30087041917179413 SA SU
14 80 0.121833889652464 0.12592441 0.10334448970648809 0.13110539234541374 SU ST
15 19 0.80458472413116 0.68981016 0.6320146089840428 0.45663695515687225 ST SA
16 86 0.418613783624583 0.3996321 0.38507333598700333 0.42555622870271104 SU ST
17 69 0.255890437855881 0.2443824 0.24520298827348516 0.22976985884082385 SU ST
18 11 0.13665815825643 0.13180844 0.1625431003840964 0.19432491460547266 ST SA
19 27 0.26678774788926 0.26877758 0.261396780338057 0.3291373134463038 ST SA
20 134 0.22367295622825623 0.2238371 0.22981579096947916 0.30650084142689904 SA SU
21 109 0.224082073434125 0.22379582 0.22782044644681612 0.2158354276685252 SA SU
22 36 0.18304535637149 0.18933222 0.20462092522207748 0.22573906945212016 ST SA
23 117 0.248281955625368 0.24057306 0.2416160266540426 0.21781517607317152 SA SU
24 78 0.105684272530925 0.10530975 0.09866546502048568 0.11652321316584963 SU ST
25 4 0.0595915963086589 0.061541352 0.11571682188397216 0.15807250512417753 ST SA
26 73 0.21367563322207 0.21226786 0.23433146783788242 0.2137809482065179 SU ST
27 26 0.0626349892008639 0.06570398 0.11816879261284292 0.1673356674356697 ST SA
28 132 0.363390928725702 0.36349946 0.3292200188396314 0.41336670872977 SA SU
29 60 0.0780973885725506 0.0780764 0.09262393622972714 0.10607383209288813 SU ST

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@ -104,7 +104,7 @@ def exec_models(df, directory, targets, features, multiple = False):
post_model(xgb_model, X_test=X_test, y_test=y_test, targets = target, modelname = "xgb_"+target, savePath=directory)
post_model(rf_model, X_test=X_test, y_test=y_test, targets = target, modelname ="rf_"+target, savePath=directory)
post_model(lgbm_model, X_test=X_test, y_test=y_test, targets = target, modelname ="lgbm_"+target, savePath=directory)
return ([xgb_model, rf_model, lgbm_model], X_test, y_test)
## execution
main_df = pd.read_csv(os.path.join("..", "data", "final_merge.csv"), sep =";", decimal= ".")

13428
scripts/pruebas.ipynb
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51
scripts/test_results.py Normal file
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@ -0,0 +1,51 @@
from modelSanoApp import exec_models, preproc
from fit_models import RFfit_lgbm
import pandas as pd
import os
import time
main_df = pd.read_csv(os.path.join("..", "data", "final_merge.csv"), sep =";", decimal= ".")
main_df[['Sex', 'Sweetener']] = main_df[['Sex', 'Sweetener']].astype("category")
study_features = ["Sex", "Sweetener"]
directory = "../results/test_cases"
print(" ----------------- STARTING "+ directory + "----------------- ")
VA_GG = False
if VA_GG:
if not os.path.exists(directory):
os.mkdir(directory)
targets = ['VA.GG_plasm_post']
features = ['VA_plasm_pre','VA.GG_plasm_pre', 'VA.S_pre', 'VA.GS_plasm_pre', 'VA.SS_plasm_pre', 'Total.VA_plasm_pre'] + study_features
model_list, X_test, y_test = exec_models(main_df, features=features, targets=targets, multiple=False, directory=directory+"/")
X_test_sweetShifted = X_test.replace(["SA", "ST", "SU"], ["SU", "SA", "ST"])
pred_xgb = pd.Series(model_list[0].predict(X_test_sweetShifted), index = y_test.index, name = "xgb_pred")
pred_rf = pd.Series(model_list[1].predict(X_test_sweetShifted), index = y_test.index, name = "rf_pred")
pred_lgbm = pd.Series(model_list[2].predict(X_test_sweetShifted), index = y_test.index, name = "lgbm_pred")
pd.concat([y_test, pred_xgb, pred_rf, pred_lgbm, X_test["Sweetener"], X_test_sweetShifted["Sweetener"]], axis = 1).to_csv(directory+"/prueba_predSweet_VA-GG.csv", sep = ";")
NG = True
if NG:
if not os.path.exists(directory):
os.mkdir(directory)
target = ['N.G_urine_post']
features = ['N.G_plasm_pre', 'N_pre','N.G_urine_pre', 'N.GG_pre', 'N.S_pre', 'Total.N_pre'] + study_features
X_train, X_test, X_val, y_train, y_test, y_val = preproc(df=main_df, targets=target, features=features)
rf_model = RFfit_lgbm(X_train, X_test, X_val, y_train, y_test, y_val)
X_test_sexShifted = X_test.replace(["MAN", "WOMAN"], ["WOMAN", "MAN"]).
#pred_xgb = pd.Series(model_list[0].predict(X_test_sexShifted), index = y_test.index, name = "xgb_pred")
pred_rf = pd.Series(rf_model.predict(X_test_sexShifted), index = y_test.index, name = "rf_pred")
#pred_lgbm = pd.Series(model_list[2].predict(X_test_sexShifted), index = y_test.index, name = "lgbm_pred")
pd.concat([y_test, pred_rf, X_test["Sex"], X_test_sexShifted["Sex"]] , axis = 1).to_csv(directory+"/prueba_predSex_NG.csv", sep = ";")