jupyter-desktop-server/README.md

# Jupyter OMERO/Fiji/Napari Desktop
[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/manics/jupyter-omeroanalysis-desktop/napari-binder?filepath=napari.ipynb)


Run [OMERO clients](https://www.openmicroscopy.org/omero/downloads/) and [Napari](http://napari.org/) in a Linux desktop using Jupyter.

This is based on https://github.com/ryanlovett/nbnovnc

Either [run on mybinder.org](https://mybinder.org/v2/gh/manics/jupyter-omeroanalysis-desktop/napari-binder?filepath=napari.ipynb) or build locally with [repo2docker](https://repo2docker.readthedocs.io/):
```
repo2docker .
```

Open the displayed URL, then go to `/desktop` e.g. http://localhost:8888/desktop and if you're lucky you'll see a Linux desktop with icons for OMERO.insight and FIJI.

Once the desktop is open go back to the main Jupyter Notebook window, open `napari.ipynb` and execute the cells one at a time. You should see Napari open in the desktop window.
Use insight 5.5.7-SNAPSHOT for websocket support 2019-10-26 00:47:10 +02:00			`# Jupyter OMERO/Fiji/Napari Desktop`
Convert to repo2docker 2019-10-26 00:01:01 +02:00			`[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/manics/jupyter-omeroanalysis-desktop/napari-binder?filepath=napari.ipynb)`
Add README.md 2019-09-26 20:02:22 +02:00
Add Napari 2019-10-25 18:54:46 +02:00
			`Run [OMERO clients](https://www.openmicroscopy.org/omero/downloads/) and [Napari](http://napari.org/) in a Linux desktop using Jupyter.`
Add README.md 2019-09-26 20:02:22 +02:00
Link readme to https://github.com/ryanlovett/nbnovnc 2019-10-02 16:12:22 +02:00			`This is based on https://github.com/ryanlovett/nbnovnc`

Use insight 5.5.7-SNAPSHOT for websocket support 2019-10-26 00:47:10 +02:00			`Either [run on mybinder.org](https://mybinder.org/v2/gh/manics/jupyter-omeroanalysis-desktop/napari-binder?filepath=napari.ipynb) or build locally with [repo2docker](https://repo2docker.readthedocs.io/):`
Add README.md 2019-09-26 20:02:22 +02:00			```
Use insight 5.5.7-SNAPSHOT for websocket support 2019-10-26 00:47:10 +02:00			`repo2docker .`
Add README.md 2019-09-26 20:02:22 +02:00			```
Jupyter Linux Desktop with OMERO clients 2019-10-18 22:13:02 +02:00
Convert to repo2docker 2019-10-26 00:01:01 +02:00			Open the displayed URL, then go to `/desktop` e.g. http://localhost:8888/desktop and if you're lucky you'll see a Linux desktop with icons for OMERO.insight and FIJI.
Add Napari 2019-10-25 18:54:46 +02:00
Convert to repo2docker 2019-10-26 00:01:01 +02:00			Once the desktop is open go back to the main Jupyter Notebook window, open `napari.ipynb` and execute the cells one at a time. You should see Napari open in the desktop window.