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gnu: r-genelendatabase: Move from "annotation" to "experiment" section.

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* gnu/packages/bioconductor.scm (r-genelendatabase): Move variable.
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Ricardo Wurmus 2020-12-17 11:38:24 +01:00
parent 30a4bd3bb3
commit e5610fd9f4
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1 changed files with 24 additions and 24 deletions
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48
gnu/packages/bioconductor.scm
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@ -569,30 +569,6 @@ as provided by UCSC (hg38, Dec. 2013) and stored in Biostrings objects.")
"This package exposes an annotation database generated from Ensembl.")
(license license:artistic2.0)))
(define-public r-genelendatabase
(package
(name "r-genelendatabase")
(version "1.18.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "geneLenDataBase" version 'experiment))
(sha256
(base32
"03gm4pvsfascx7kjg0jycpf4f572mja68wwmwigs390vbmawyb4a"))))
(properties
`((upstream-name . "geneLenDataBase")))
(build-system r-build-system)
(propagated-inputs
`(("r-rtracklayer" ,r-rtracklayer)
("r-genomicfeatures" ,r-genomicfeatures)))
(home-page "https://bioconductor.org/packages/geneLenDataBase/")
(synopsis "Lengths of mRNA transcripts for a number of genomes")
(description
"This package provides the lengths of mRNA transcripts for a number of
genomes and gene ID formats, largely based on the UCSC table browser.")
(license license:lgpl2.0+)))
(define-public r-txdb-hsapiens-ucsc-hg19-knowngene
(package
(name "r-txdb-hsapiens-ucsc-hg19-knowngene")
@ -1025,6 +1001,30 @@ All datasets are restricted to protein coding genes.")
from Illumina 450k methylation arrays.")
(license license:artistic2.0)))
(define-public r-genelendatabase
(package
(name "r-genelendatabase")
(version "1.18.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "geneLenDataBase" version 'experiment))
(sha256
(base32
"03gm4pvsfascx7kjg0jycpf4f572mja68wwmwigs390vbmawyb4a"))))
(properties
`((upstream-name . "geneLenDataBase")))
(build-system r-build-system)
(propagated-inputs
`(("r-rtracklayer" ,r-rtracklayer)
("r-genomicfeatures" ,r-genomicfeatures)))
(home-page "https://bioconductor.org/packages/geneLenDataBase/")
(synopsis "Lengths of mRNA transcripts for a number of genomes")
(description
"This package provides the lengths of mRNA transcripts for a number of
genomes and gene ID formats, largely based on the UCSC table browser.")
(license license:lgpl2.0+)))
(define-public r-hsmmsinglecell
(package
(name "r-hsmmsinglecell")