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Author SHA1 Message Date
Alex Sassmannshausen
2940b3e16c
gnu: php: Update to 7.4.3. 
* gnu/packages/php.scm (php): Update to 7.4.3.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2020-02-21 02:44:25 +01:00
Florian Pelz
00500449b0
services: udev: Do not rely on shepherd inheriting environment variables. 
Fixes <https://bugs.gnu.org/39671>.

* gnu/services/base.scm (udev-shepherd-service)[start] Move or copy
environment variables to 'fork+exec-command' instead of 'setenv'.
 2020-02-20 22:34:06 +00:00
Jakub Kądziołka
bb90beb5bf
gnu: corrode: Use git-file-name. 
* gnu/packages/haskell-apps.scm (corrode): Use git-file-name.
 2020-02-20 22:46:40 +01:00
Jakub Kądziołka
779ce96faf
gnu: libjit: Use git-file-name 
* gnu/packages/assembly.scm (libjit): Use git-file-name.
 2020-02-20 22:45:33 +01:00
Jakub Kądziołka
d47f96307b
gnu: guile-gcrypt: Use git-file-name 
* gnu/packages/gnupg.scm (guile-gcrypt): Use git-file-name.
 2020-02-20 22:45:33 +01:00
Jakub Kądziołka
123334fadd
gnu: ath9k-htc-firmware, b43-tools: Use git-file-name. 
* gnu/packages/firmware.scm (ath9k-htc-firmware): Use git-file-name.
  (b43-tools): Likewise.
 2020-02-20 22:45:33 +01:00
Jakub Kądziołka
ec299312a0
gnu: fpga.scm: Use git-version and git-file-name where appropriate. 
* gnu/packages/fpga.scm (abc): Use git-version. The uri is using an
  autogenerated commit package, it would ideally use git-fetch. The
  canonical repository is now on GitHub, but the old commit ID is not
  present. This means that changing the origin is best done together
  with an update.
  (icestorm): Use git-version, git-file-name.
  (arachne-pnr): Use git-file-name.
 2020-02-20 22:45:33 +01:00
Jakub Kądziołka
fb36ac61d4
gnu: ntk: Use git-file-name. 
* gnu/packages/fltk.scm (ntk): Use git-file-name.
 2020-02-20 22:45:32 +01:00
Kyle Meyer
d4160848a0
gnu: git-annex: Update to 7.20200219. 
* gnu/packages/haskell-apps.scm (git-annex): Update to 7.20200219.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-02-20 16:30:29 -05:00
Leo Famulari
cbfa8bb313
gnu: perl-image-exiftool: Update to 11.85. 
* gnu/packages/photo.scm (perl-image-exiftool): Update to 11.85.
 2020-02-20 16:30:22 -05:00
Leo Famulari
0dc1f651a8
gnu: RawTherapee: Update to 5.8. 
* gnu/packages/photo.scm (rawtherapee): Update to 5.8.
 2020-02-20 15:00:28 -05:00
Nicolas Goaziou
bf8dfe3df0
doc: Use two spaces after full stops. 
* doc/guix.texi (The Store): Use two spaces after full stops.
 2020-02-20 14:06:44 +01:00
Lars-Dominik Braun
35f3511167
ssh: Add Kerberos-support to ssh:// daemon URLs 
* guix/ssh.scm (open-ssh-session): Fall back to GSSAPI if public key
authentication does not work

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-02-20 11:14:44 +01:00
Lars-Dominik Braun
ef30ddb2c2
gnu: Add Kerberos support to libssh 
* gnu/packages/ssh.scm (libssh)[inputs]: Depend on mit-krb5

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-02-20 11:14:39 +01:00
Ludovic Courtès
7ff86ecae1
build-self: Show wider backtraces. 
* build-aux/build-self.scm (build): Add 'setenv' call for "COLUMNS".
 2020-02-20 11:12:33 +01:00
Leo Famulari
9b2310a0b4
gnu: certbot, python-acme: Update to 1.2.0. 
* gnu/packages/tls.scm (certbot, python-acme): Update to 1.2.0.
 2020-02-19 22:51:57 -05:00
Mark H Weaver
3be96aa9d9
gnu: linux-libre: Update to 5.4.21. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.21.
(linux-libre-5.4-pristine-source): Update hash.
 2020-02-19 22:32:39 -05:00
Mark H Weaver
bfab5ce9c4
gnu: linux-libre@4.19: Update to 4.19.105. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.105.
(linux-libre-4.19-pristine-source): Update hash.
 2020-02-19 22:31:21 -05:00
Julien Lepiller
6dde98c3d9
gnu: libevent: Split into two outputs. 
This removes python and its dependencies from the libevent closure,
reducing it from 180MB to 70MB.

* gnu/packages/libevent.scm (libevent): Add bin output.
 2020-02-20 02:09:56 +01:00
Tobias Geerinckx-Rice
00c967f6a4
gnu: js-selectize: Use HTTPS home page. 
* gnu/packages/javascript.scm (js-selectize)[home-page]: Use HTTPS.
 2020-02-19 23:48:26 +01:00
Tobias Geerinckx-Rice
082c733c1d
gnu: python-scikit-image: Use HTTPS home page. 
* gnu/packages/python-science.scm (python-scikit-image)[home-page]: Use HTTPS.
 2020-02-19 23:48:15 +01:00
Tobias Geerinckx-Rice
1dc184b441
gnu: transset-df: Use HTTPS home page. 
* gnu/packages/xorg.scm (transset-df)[home-page]: Use HTTPS.
 2020-02-19 23:43:40 +01:00
Tobias Geerinckx-Rice
5ee0e01320
gnu: munge: Update to 0.5.14. 
* gnu/packages/admin.scm (munge): Update to 0.5.14.
[source]: Expand snippet.
[arguments]: Continue installing pkg-config file.
Add new ‘skip-failing-tests’ for the new test suite.
 2020-02-19 23:43:40 +01:00
Tobias Geerinckx-Rice
7039b199a2
gnu: crypto++: Update to 8.2.0. 
* gnu/packages/crypto.scm (crypto++): Update to 8.2.0.
 2020-02-19 23:43:40 +01:00
Tobias Geerinckx-Rice
e54b381dd4
gnu: crypto++: Returt #t from all phases. 
* gnu/packages/crypto.scm (crypto++)[arguments]: Return #t from
‘install-pkg-config’.
 2020-02-19 23:43:39 +01:00
Tobias Geerinckx-Rice
bfa3caa2fb
gnu: crypto++: Build in parallel. 
* gnu/packages/crypto.scm (crypto++)[arguments]: Make ‘build-shared’
the main ‘build’ phase.  Respect MAKE-FLAGS and PARALLEL-JOB-COUNT.
 2020-02-19 23:43:39 +01:00
Tobias Geerinckx-Rice
3ca6c1a720
gnu: crypto++: Don't hard-code VERSION. 
* gnu/packages/crypto.scm (crypto++)[arguments]: Use package VERSION.
 2020-02-19 23:43:39 +01:00
Tobias Geerinckx-Rice
e48390cb20
gnu: libbytesize: Update to 2.2. 
* gnu/packages/c.scm (libbytesize): Update to 2.2.
 2020-02-19 23:43:39 +01:00
Ricardo Wurmus
f55084b782
gnu: r-scran: Update to 1.14.6. 
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.14.6.
 2020-02-19 23:00:58 +01:00
Ricardo Wurmus
9374f550e6
gnu: r-hdf5array: Update to 1.14.2. 
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.2.
 2020-02-19 23:00:53 +01:00
Ricardo Wurmus
f2b9f41234
gnu: r-gviz: Update to 1.30.3. 
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.30.3.
 2020-02-19 23:00:48 +01:00
Ricardo Wurmus
3f4f3a7822
gnu: r-rhtslib: Update to 1.18.1. 
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.18.1.
 2020-02-19 23:00:42 +01:00
Ricardo Wurmus
f0e330d68b
gnu: r-genomicfeatures: Update to 1.38.2. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.38.2.
 2020-02-19 23:00:36 +01:00
Ricardo Wurmus
154babb9c4
gnu: r-rsamtools: Update to 2.2.2. 
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.2.2.
 2020-02-19 23:00:31 +01:00
Ricardo Wurmus
e0ca7b3a14
gnu: r-limma: Update to 3.42.2. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.42.2.
 2020-02-19 23:00:25 +01:00
Ricardo Wurmus
0f72b7abd8
gnu: r-shortread: Update to 1.44.3. 
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.44.3.
 2020-02-19 23:00:20 +01:00
Ricardo Wurmus
d66901e2c3
gnu: r-depecher: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.1.
 2020-02-19 23:00:13 +01:00
Ricardo Wurmus
f607098f05
gnu: r-mixomics: Update to 6.10.8. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.8.
 2020-02-19 23:00:08 +01:00
Ricardo Wurmus
e01fa33baa
gnu: r-rsubread: Update to 2.0.1. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.0.1.
 2020-02-19 23:00:02 +01:00
Ricardo Wurmus
f86549cbb6
gnu: r-atacseqqc: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.2.
 2020-02-19 22:59:56 +01:00
Ricardo Wurmus
776e98fe05
gnu: r-heatplus: Update to 2.32.1. 
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.32.1.
 2020-02-19 22:59:49 +01:00
Ricardo Wurmus
effbf7d986
gnu: r-biocsingular: Update to 1.2.2. 
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.2.
 2020-02-19 22:59:44 +01:00
Ricardo Wurmus
b7e86efd3b
gnu: r-inspect: Update to 1.16.3. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.3.
 2020-02-19 22:59:35 +01:00
Ricardo Wurmus
e40d6c4c7a
gnu: r-biclust: Update to 2.0.2. 
* gnu/packages/cran.scm (r-biclust): Update to 2.0.2.
 2020-02-19 21:19:55 +01:00
Ricardo Wurmus
1a060eabf8
gnu: r-tolerance: Update to 2.0.0. 
* gnu/packages/cran.scm (r-tolerance): Update to 2.0.0.
[propagated-inputs]: Add r-mass.
 2020-02-19 21:19:39 +01:00
Ricardo Wurmus
a3d80e6212
gnu: r-imager: Update to 0.42.1. 
* gnu/packages/cran.scm (r-imager): Update to 0.42.1.
[propagated-inputs]: Remove r-cairo and r-plyr.
 2020-02-19 21:19:04 +01:00
Ricardo Wurmus
90d499782e
gnu: r-actigraphy: Update to 1.4.0. 
* gnu/packages/cran.scm (r-actigraphy): Update to 1.4.0.
[propagated-inputs]: Remove r-sdmtools.
 2020-02-19 21:18:30 +01:00
Ricardo Wurmus
46d833ef98
gnu: r-actfrag: Update to 0.1.1. 
* gnu/packages/cran.scm (r-actfrag): Update to 0.1.1.
 2020-02-19 21:18:22 +01:00
Ricardo Wurmus
fd483cb370
gnu: r-gamlss: Update to 5.1-6. 
* gnu/packages/cran.scm (r-gamlss): Update to 5.1-6.
 2020-02-19 21:18:14 +01:00
Ricardo Wurmus
1a3a1d66d6
gnu: r-randtoolbox: Update to 1.30.1. 
* gnu/packages/cran.scm (r-randtoolbox): Update to 1.30.1.
 2020-02-19 21:18:07 +01:00