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Author SHA1 Message Date
Leo Famulari 46a65b5a3d
gnu: gst-libav: Fix a stack corruption bug. 
* gnu/packages/patches/gst-libav-64channels-stack-corruption.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gstreamer.scm (gst-libav)[source]: Use it.
 2021-04-27 01:58:55 -04:00
Leo Famulari c48b8fed25
gnu: gst-plugins-good: Fix CVE-2021-3497 and CVE-2021-3498. 
* gnu/packages/patches/gst-plugins-good-CVE-2021-3497.patch,
gnu/packages/patches/gst-plugins-good-CVE-2021-3498.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gstreamer.scm (gst-plugins-good)[source]: Use them.
 2021-04-27 01:58:55 -04:00
Leo Famulari 0cb4ef1c7f
gnu: GIMP: Update to 2.10.24. 
* gnu/packages/gimp.scm (gimp): Update to 2.10.24.
[source]: Remove obsolete patch 'gimp-make-gegl-introspect-optional.patch'.
* gnu/packages/patches/gimp-make-gegl-introspect-optional.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2021-04-27 01:07:54 -04:00
Leo Famulari 67928ad4c2
gnu: gegl: Update to 0.4.30. 
* gnu/packages/gimp.scm (gegl): Update to 0.4.30.
 2021-04-27 01:07:54 -04:00
Maxim Cournoyer ef63a4fa3b
doc: Remove extraneous spaces from the net-options default value snippet. 
Adapting the snippet corresponding to the default value of the net-options
field of the hurd-vm-configuration record shown in the manual would easily
lead to a broken childhurd service, due to the presence of extraneous spaces
in the option string.

* doc/guix.texi (Virtualization Services)[hurd-vm-configuration]
<net-options>: Use string-append to properly form the option string.
 2021-04-26 23:43:06 -04:00
Leo Famulari 4de688738c
doc: Clarify the utility of the development branches. 
* doc/contributing.texi (Submitting Patches): Clarify the utility of the
'staging' and 'core-updates' branches.
 2021-04-26 16:10:53 -04:00
David Dashyan bd3f3f8150
gnu: emacs-counsel-projectile: Update to 0.3.1-0-06b03c1. 
* gnu/packages/emacs-xyz.scm (emacs-counsel-projectile): Update to
0.3.1-0-06b03c1.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-04-26 21:07:22 +02:00
Raphaël Mélotte 787d631ab2
gnu: Add tio. 
* gnu/packages/terminals.scm (tio): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-04-26 20:58:30 +02:00
Felipe Balbi 1457f76621
gnu: Add vice emulator 
* gnu/packages/emulators.scm (vice): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-04-26 20:53:16 +02:00
Efraim Flashner b33f5d7ff0
gnu: syncthing: Prepare for cross-compiling. 
* gnu/packages/syncthing.scm (syncthing)[arguments]: Add custom
'pre-build phase to not set a local GOBIN directory. Adjust custom
'build and 'install phases accordingly.
 2021-04-26 21:32:50 +03:00
Efraim Flashner 9c8a108186
gnu: syncthing: Allow skipping the check phase. 
* gnu/packages/syncthing.scm (syncthing)[arguments]: Adjust the custom
'check phase so tests only run when enabled.
 2021-04-26 21:32:49 +03:00
Oleg Pykhalov 43a7724040
services: nix: Add /bin/sh to build-sandbox-paths. 
Fixes <https://bugs.gnu.org/46297>.

* gnu/services/nix.scm (nix-service-etc): Add /bin/sh to build-sandbox-paths.
 2021-04-26 20:03:55 +03:00
Nicolas Goaziou 92e2249b1f
gnu: python-pikepdf: Update to 2.11.2. 
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.11.2.
 2021-04-26 18:32:46 +02:00
Pierre Neidhardt 7a6e603a43
gnu: Add dufy. 
* gnu/packages/lisp-xyz.scm (cl-dufy, ecl-dufy, sbcl-dufy): New variables.
 2021-04-26 17:45:20 +02:00
Pierre Neidhardt 331c498835
gnu: Add lispbuilder-sdl. 
* gnu/packages/lisp-xyz.scm (cl-lispbuilder-sdl, ecl-lispbuilder-sdl,
sbcl-lispbuilder-sdl): New variables.
 2021-04-26 17:45:09 +02:00
Pierre Neidhardt e6bff48005
gnu: Add cl-mime. 
* gnu/packages/lisp-xyz.scm (cl-mime, ecl-cl-mime, sbcl-cl-mime): New variables.
 2021-04-26 17:19:01 +02:00
Pierre Neidhardt 6cd8361e78
gnu: Add cl-qprint. 
* gnu/packages/lisp-xyz.scm (cl-qprint, ecl-cl-qprint, sbcl-cl-qprint): New variables.
 2021-04-26 17:09:42 +02:00
Lars-Dominik Braun f365d48909
gnu: python-pyside-2: Propagate python-shiboken-2. 
Importing PySide2 failed, because shiboken was not propagated. Testcase:

> guix environment --ad-hoc python python-pyside-2 -- python -c 'import PySide2'
PySide2/__init__.py: Unable to import shiboken2 from , /gnu/store/vpniba85hhzb2270hki61z0d2kfvb64l-profile/lib/python3.8/site-packages, /usr/lib/python38.zip, /usr/lib/python3.8, /usr/lib/python3.8/lib-dynload, /usr/lib/python3.8/site-packages
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/gnu/store/vpniba85hhzb2270hki61z0d2kfvb64l-profile/lib/python3.8/site-packages/PySide2/__init__.py", line 91, in <module>
    _setupQtDirectories()
  File "/gnu/store/vpniba85hhzb2270hki61z0d2kfvb64l-profile/lib/python3.8/site-packages/PySide2/__init__.py", line 57, in _setupQtDirectories
    import shiboken2
ModuleNotFoundError: No module named 'shiboken2'

* gnu/packages/qt.scm (python-pyside-2) [native-inputs]: Move from here…
[propagated-inputs]: …to here.
 2021-04-26 13:52:51 +02:00
Efraim Flashner accb9fe6ac
gnu: gdb-10: Update to 10.2. 
* gnu/packages/gdb.scm (gdb-10): Update to 10.2.
 2021-04-26 14:51:14 +03:00
Efraim Flashner 81c5d985a6
gnu: Add ruby-email-reply-trimmer. 
* gnu/packages/ruby.scm (ruby-email-reply-trimmer): New variable.
 2021-04-26 14:42:16 +03:00
Pjotr Prins 04ab609b13
gnu: Add ruby-redis. 
* gnu/packages/databases.scm (ruby-redis): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2021-04-26 14:42:13 +03:00
Guillaume Le Vaillant fa5beb03f3
gnu: txr: Update to 257. 
* gnu/packages/lisp.scm (txr): Update to 257.
 2021-04-26 13:30:46 +02:00
Mathieu Othacehe 2c72db4287
gnu: cuirass: Update to 1.0.0-16.40b3238. 
* gnu/packages/ci.scm (cuirass): Update to 1.0.0-16.40b3238.
 2021-04-26 11:59:13 +02:00
Nicolas Goaziou 454029482c
gnu: emacs-auctex: Update to 13.0.9. 
* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 13.0.9.
 2021-04-26 11:53:27 +02:00
Lars-Dominik Braun 2209e5c753
gnu: python-notebook: Fix tests. 
They failed because JUPYTER_PATH was set in commit
1683e9d967.

* gnu/packages/python-xyz.scm (python-notebook) [#:phases]: Unset
JUPYTER_PATH in 'check.
 2021-04-26 10:37:07 +02:00
Lars-Dominik Braun d57341234d
gnu: python-nbconvert: Enable more tests. 
Enables more tests and fixes a few paths.

* gnu/packages/python-xyz.scm (python-nbconvert) [arguments]: Add new
phase, fixing pandoc/LaTeX paths. Set required environment variables in
'check phase.
[inputs]: Add pandoc and texlive.
[native-inputs]: Add missing inputs for tests.
[propagated-inputs]: Add tornado, which is always required.
 2021-04-26 10:26:48 +02:00
Lars-Dominik Braun 9857abadba
gnu: Add python-pytest-dependency. 
* gnu/packages/check.scm (python-pytest-dependency): New variable.
 2021-04-26 10:26:48 +02:00
Lars-Dominik Braun f57873f20b
gnu: python-ipykernel: Add missing inputs. 
* gnu/packages/python-xyz.scm (python-ipykernel) [propagated-inputs]:
Add tornado and traitlets.
 2021-04-26 10:26:47 +02:00
Lars-Dominik Braun 7914515cd3
gnu: python-jupyter-client: Enable tests. 
* gnu/packages/python-xyz.scm (python-jupyter-client) [arguments]:
Enable tests. Run pytest during 'check.
[native-inputs]: Add missing test inputs.
 2021-04-26 10:26:47 +02:00
Lars-Dominik Braun f371e53aaa
gnu: Add python-ipykernel-bootstrap. 
* gnu/packages/python-xyz.scm (python-ipykernel-bootstrap): New
variable.
 2021-04-26 10:26:47 +02:00
Lars-Dominik Braun a0e98da14f
gnu: Add python-jupyter-client-bootstrap. 
* gnu/packages/python-xyz.scm (python-jupyter-client-bootstrap): New
variable.
 2021-04-26 10:26:47 +02:00
Lars-Dominik Braun 7f06ab7fc0
gnu: python-nbformat: Enable tests. 
* gnu/packages/python-xyz.scm (python-nbformat) [source]: Use git
repository, which has more complete test data.
[arguments]: Run pytest during 'check.
[native-inputs]: Add dependencies required to do that.
 2021-04-26 10:26:47 +02:00
Lars-Dominik Braun 2bcaf11d7c
gnu: Add python-fastjsonschema. 
* gnu/packages/python-xyz.scm (python-fastjsonschema): New variable.
 2021-04-26 10:26:46 +02:00
Lars-Dominik Braun b29e576f67
gnu: Add python-json-spec. 
* gnu/packages/python-xyz.scm (python-json-spec): New variable.
 2021-04-26 10:26:46 +02:00
Lars-Dominik Braun 51646c5435
gnu: python-jupyter-core: Enable tests. 
* gnu/packages/python-xyz.scm (python-jupyter-core) [arguments]: Enable
tests.
[native-inputs]: Add test dependencies.
 2021-04-26 10:26:46 +02:00
Lars-Dominik Braun 1683e9d967
gnu: Move search path JUPYTER_PATH. 
python-jupyter-core provides the `jupyter` binary as well as generic
functions to discover the search path for all Jupyter subprojects. Thus
it should provide the search paths too.

* gnu/packages/python-xyz.scm (jupyter): From here…
(python-jupyter-core): …to here.
[native-search-paths]: Add JUPYTER_CONFIG_DIR, because some Jupyter
projects install config files to their etc/ directory and expect them to
be loaded automatically.
 2021-04-26 10:26:46 +02:00
Lars-Dominik Braun 2ff36e4186
gnu: gtkdatabox: Adjust source URL. 
It looks like the package sources have been relocated. Hash is still the
same.

* gnu/packages/gtk.scm (gtkdatabox) [source]: Adjust URL.
 2021-04-26 10:25:28 +02:00
Efraim Flashner bb62f359bf
gnu: libmicrohttpd: Update to 0.9.73. 
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.73.
 2021-04-26 11:16:48 +03:00
Efraim Flashner 3c9856c7b2
gnu: libextractor: Update to 1.11. 
* gnu/packages/gnunet.scm (libextractor): Update to 1.11.
[outputs]: Adjust comment about size of static output.
 2021-04-26 11:16:42 +03:00
Pierre Neidhardt 0581cd8110
gnu: Add simple-rgb. 
* gnu/packages/lisp-xyz.scm (cl-simple-rgb, ecl-simple-rgb, sbcl-simple-rgb):
New variables.
 2021-04-26 09:26:44 +02:00
Ludovic Courtès d904abe076
gnu: kmscon: Open a new keymap-update FIFO once a request has been processed. 
Fixes <https://bugs.gnu.org/39341>.
Reported by Maxim Cournoyer <maxim.cournoyer@gmail.com>.

Until now, as soon as you had selected the keyboard layout in the
Guix System installer, kmscon would start spinning on epoll_wait(2)
calls because of an event on the initial FIFO file
descriptor (corresponding to the fact that the client closed it.)

* gnu/packages/patches/kmscon-runtime-keymap-switch.patch: In
'uxkb_keymap_update_handler', add calls to 'ev_eloop_rm_fd', 'close',
and 'uxkb_dev_keymap_update'  In 'uxkb_dev_keymap_update', add call
to 'unlink'.
 2021-04-25 23:35:04 +02:00
Ludovic Courtès c09e331b25
gnu: xfce, mate: Propagate 'font-dejavu'. 
Fixes <https://bugs.gnu.org/47713>.
Reported by bo0od <bo0od@riseup.net>.

This ensures applications such as IceCat can properly text (numbers in
the case of IceCat).

* gnu/packages/enlightenment.scm (enlightenment)[propagated-inputs]: Add
FONT-DEJAVU.
* gnu/packages/mate.scm (mate)[propagated-inputs]: New field.
* gnu/packages/xfce.scm (xfce)[propagated-inputs]: New field.
 2021-04-25 23:35:04 +02:00
Ludovic Courtès 69afc5fd23
gnu: xfdesktop: Add Guix logo to default background. 
* gnu/packages/xfce.scm (xfdesktop)[arguments]: In
'prepare-background-image' phase, add "xfce-verticals.png".
 2021-04-25 23:35:04 +02:00
Ryan Prior d34371c92b
gnu: esbuild: Update to 0.11.14. 
* gnu/package/web.scm (esbuild): Update to 0.11.14.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-04-25 15:00:18 -04:00
Vinicius Monego 5461efe81f
gnu: Add orange. 
* gnu/packages/orange.scm (orange): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-04-25 14:49:58 -04:00
Vinicius Monego 9605f23ff4
gnu: python-opentsne: Update to 0.5.2. 
* gnu/packages/machine-learning.scm (python-opentsne): Update to 0.5.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-04-25 14:49:57 -04:00
Vinicius Monego 34c09669c9
gnu: python-pynndescent: Update to 0.5.2. 
* gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-04-25 14:49:57 -04:00
Vinicius Monego 76fb1a5cf2
gnu: Add python-louvain 0.15. 
* gnu/packages/graph.scm (python-louvain): Rename variable to
python-louvain-0.6.
(python-louvain): New variable.
* gnu/packages/bioinformatics.scm (python-scanpy)[propagated-inputs]: Use
python-louvain-0.6.

Co-authored-by: Leo Famulari <leo@famulari.name>
 2021-04-25 14:49:57 -04:00
Vinicius Monego 0b5ab41f29
gnu: Add python-serverfiles. 
* gnu/packages/orange.scm (python-serverfiles): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-04-25 14:49:57 -04:00
Vinicius Monego 13b2bfad29
gnu: Add python-orange-widget-base. 
* gnu/packages/orange.scm (python-orange-widget-base): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-04-25 14:49:57 -04:00