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79177 commits

Author SHA1 Message Date
Ricardo Wurmus
481c3222e6
gnu: r-rots: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-rots): Update to 1.20.0.
2021-06-05 09:12:46 +02:00
Ricardo Wurmus
089f64657b
gnu: r-glimma: Update to 2.2.0.
* gnu/packages/bioconductor.scm (r-glimma): Update to 2.2.0.
2021-06-05 09:12:46 +02:00
Ricardo Wurmus
4485bc7183
gnu: r-goseq: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.44.0.
2021-06-05 09:12:46 +02:00
Ricardo Wurmus
87d6e68015
gnu: r-ctc: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.66.0.
2021-06-05 09:12:46 +02:00
Ricardo Wurmus
675f1a9144
gnu: r-genomicinteractions: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.26.0.
2021-06-05 09:12:46 +02:00
Ricardo Wurmus
ba7757cf1f
gnu: r-interactionset: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.20.0.
2021-06-05 09:12:46 +02:00
Ricardo Wurmus
43a0a48a69
gnu: r-riboseqr: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.26.0.
2021-06-05 09:12:46 +02:00
Ricardo Wurmus
0443b3c180
gnu: r-riboprofiling: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.22.0.
2021-06-05 09:12:46 +02:00
Ricardo Wurmus
afc59d2e2c
gnu: r-chipcomp: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.22.0.
2021-06-05 09:12:46 +02:00
Ricardo Wurmus
38f2e3979f
gnu: r-bayseq: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.26.0.
2021-06-05 09:12:46 +02:00
Ricardo Wurmus
11c7a044bd
gnu: r-qdnaseq: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.28.0.
2021-06-05 09:12:46 +02:00
Ricardo Wurmus
1c3e239270
gnu: r-cghcall: Update to 2.54.0.
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.54.0.
2021-06-05 09:12:46 +02:00
Ricardo Wurmus
09c90d8fb4
gnu: r-cghbase: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.52.0.
2021-06-05 09:12:46 +02:00
Ricardo Wurmus
0045d21f67
gnu: r-marray: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-marray): Update to 1.70.0.
2021-06-05 09:12:46 +02:00
Ricardo Wurmus
202202c8ad
gnu: r-matrixgenerics: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.4.0.
2021-06-05 09:12:46 +02:00
Ricardo Wurmus
538605493c
gnu: r-chippeakanno: Update to 3.26.0.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.0.
[propagated-inputs]: Add r-interactionset.
2021-06-05 09:12:46 +02:00
Ricardo Wurmus
fceca5cd82
gnu: r-graph: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-graph): Update to 1.70.0.
2021-06-05 09:12:46 +02:00
Ricardo Wurmus
bed64f7be6
gnu: r-multtest: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.48.0.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
ff7a86f0ca
gnu: r-mbkmeans: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-mbkmeans): Update to 1.8.0.
[propagated-inputs]: Remove r-bluster; add r-rcpparmadillo.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
27abca93b1
gnu: r-diffbind: Update to 3.2.1.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.1.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
737a228702
gnu: r-greylistchip: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-greylistchip): Update to 1.24.0.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
941a868515
gnu: r-apeglm: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.14.0.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
371149da6f
gnu: r-qvalue: Update to 2.24.0.
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.24.0.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
359c350c7d
gnu: r-oligo: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.56.0.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
2c9c656f47
gnu: r-oligoclasses: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.54.0.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
c68607725b
gnu: r-geneplotter: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.70.0.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
473371dfc1
gnu: r-zlibbioc: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.38.0.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
092d2a8d85
gnu: r-xvector: Update to 0.32.0.
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.32.0.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
e4a34df239
gnu: r-vsn: Update to 3.60.0.
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.60.0.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
c73b9d6c66
gnu: r-variantannotation: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.38.0.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
2817a8f292
gnu: r-tximport: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.20.0.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
ad6ba3de65
gnu: r-topgo: Update to 2.44.0.
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.44.0.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
7728c5909f
gnu: r-systempiper: Update to 1.26.2.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 1.26.2.
[propagated-inputs]: Add r-testthat.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
81c55df9a8
gnu: r-sva: Update to 3.40.0.
* gnu/packages/bioconductor.scm (r-sva): Update to 3.40.0.
2021-06-05 09:12:45 +02:00
Ricardo Wurmus
6eaa9221d9
gnu: r-summarizedexperiment: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.22.0.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
8c0f2d9e0a
gnu: r-structuralvariantannotation: Update to 1.8.0.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.8.0.
[propagated-inputs]: Add r-rlang.
[native-inputs]: Add r-knitr.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
8e0dac09c4
gnu: r-slingshot: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.0.0.
[propagated-inputs]: Remove r-ape; add r-s4vectors and r-trajectoryutils.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
15f371cc89
gnu: r-shortread: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.50.0.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
76edc5ae98
gnu: r-seqpattern: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.24.0.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
58ae27d46c
gnu: r-seqlogo: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.58.0.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
5ce21e7153
gnu: r-rtracklayer: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.52.0.
[propagated-inputs]: Add r-biocio and r-restfulr.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
e22d743aa6
gnu: r-rsamtools: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-rsamtools): Update to 2.8.0.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
f2f4ca7456
gnu: r-rhdf5filters: Update to 1.4.0.
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.4.0.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
51bee5c40f
gnu: r-reportingtools: Update to 2.32.0.
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.32.0.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
2da4ee4c77
gnu: r-regioner: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.24.0.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
38fa99c1d0
gnu: r-rcas: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-rcas): Update to 1.18.0.
[propagated-inputs]: Add r-knitr.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
7c45bc9391
gnu: r-rbgl: Update to 1.68.0.
* gnu/packages/bioconductor.scm (r-rbgl): Update to 1.68.0.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
dc67525ae6
gnu: r-protgenerics: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-protgenerics): Update to 1.24.0.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
0ec6177cc1
gnu: r-pcamethods: Update to 1.84.0.
* gnu/packages/bioconductor.scm (r-pcamethods): Update to 1.84.0.
2021-06-05 09:12:44 +02:00
Ricardo Wurmus
5d37cee6c1
gnu: r-organismdbi: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.34.0.
2021-06-05 09:12:44 +02:00