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Author SHA1 Message Date
Ricardo Wurmus
59c5f85d06
gnu: Remove python-loompy-for-pigx-scrnaseq. 
* gnu/packages/bioinformatics.scm (python-loompy-for-pigx-scrnaseq): Remove
variable.
 2020-02-26 08:59:11 +01:00
Ricardo Wurmus
4f19106770
gnu: pigx-scrnaseq: Update to 1.1.3. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 1.1.3.
[arguments]: Remove.
[inputs]: Remove dropseq-tools and java-picard; add flexbar, jellyfish, and
r-seurat; replace python-loompy-for-pigx-scrnaseq with python-loompy.
 2020-02-26 08:58:06 +01:00
Ricardo Wurmus
290b55c55a
gnu: clang-runtime-3.5: Fix build. 
* gnu/packages/llvm.scm (clang-runtime-3.5)
[inputs]: Add libtirpc.
[arguments]: Add phase to find rpc headers.
 2020-02-25 22:49:20 +01:00
Ricardo Wurmus
d2ebdb795d
gnu: Add r-rsconnect. 
* gnu/packages/cran.scm (r-rsconnect): New variable.
 2020-02-25 22:49:20 +01:00
Ricardo Wurmus
91f242357d
gnu: Add r-packrat. 
* gnu/packages/cran.scm (r-packrat): New variable.
 2020-02-25 22:49:20 +01:00
Alexandros Theodotou
6616b22b12
gnu: zrythm: Update to 0.7.573. 
* gnu/packages/music.scm (zrythm): Update to 0.7.573.

Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
 2020-02-25 20:16:55 +01:00
Marius Bakke
dcc3f21586
gnu: libzip: Update to 1.6.1. 
* gnu/packages/compression.scm (libzip): Update to 1.6.1.
[inputs]: Add XZ.
 2020-02-25 18:35:34 +01:00
Marius Bakke
93f71b29a5
gnu: python-xmlschema: Update to 1.1.1. 
* gnu/packages/xml.scm (python-xmlschema): Update to 1.1.1.
 2020-02-25 18:35:34 +01:00
Marius Bakke
cce5903672
gnu: xapian: Update to 1.4.15. 
* gnu/packages/search.scm (xapian, python-xapian-bindings): Update to 1.4.15.
 2020-02-25 18:35:34 +01:00
Marius Bakke
cbd8d8a879
gnu: libgphoto2: Update to 2.5.24. 
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.24.
 2020-02-25 18:35:34 +01:00
Marius Bakke
eab27d2277
gnu: fluidsynth: Update to 2.1.1. 
* gnu/packages/audio.scm (fluidsynth): Update to 2.1.1.
 2020-02-25 18:35:33 +01:00
Marius Bakke
1b01c103db
gnu: mbedtls-apache: Update to 2.16.5. 
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.16.5.
 2020-02-25 18:35:33 +01:00
Marius Bakke
adf323e0d7
gnu: ungoogled-chromium: Update to 80.0.3987.122-0.bb952f1 [security fixes]. 
This release fixes CVE-2020-6407 and CVE-2020-6418.

* gnu/packages/chromium.scm (%chromium-version): Set to 80.0.3987.122.
(%ungoogled-revision): Update to 6056988937eb.
(%chromium-origin): Update hash.
(%ungoogled-origin): Download from pull request, update hash.
 2020-02-25 18:35:33 +01:00
Marius Bakke
bfce33cdff
gnu: ungoogled-chromium-wayland: Fix build. 
* gnu/packages/chromium.scm (ungoogled-chromium/wayland)[arguments]: Add #:phases.
 2020-02-25 18:35:33 +01:00
Marius Bakke
d64584cfb3
gnu: ungoogled-chromium: Add license information about preserved files. 
This is a follow-up to commit f613d459be.

* gnu/packages/chromium.scm (%preserved-third-party-files): Annotate newly
added entries with license information.
 2020-02-25 18:35:33 +01:00
Pierre Neidhardt
f5520827b5
gnu: emacs-geiser: Update to 0.11.2. 
* gnu/packages/emacs-xyz.scm (emacs-geiser): Update to 0.11.2.
 2020-02-25 15:52:38 +01:00
Valentin Ignatev
f93a13c44a
gnu: Add rust-syn-0.11 and rust-synom-0.11. 
* gnu/packages/crates-io.scm (rust-syn-0.11, rust-synom-0.11):
New variables.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:59 +02:00
Valentin Ignatev
d489351cf8
gnu: Add rust-walkdir-1.0. 
* gnu/packages/crates-io.scm (rust-walkdir-1.0): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:59 +02:00
Efraim Flashner
40b4b6dfee
gnu: rust-regex-syntax-0.3: Don't skip build. 
* gnu/packages/crates-io.scm (rust-regex-syntax-0.3)[arguments]: Don't
skip build.
 2020-02-25 16:48:59 +02:00
Valentin Ignatev
8d90f2c786
gnu: Add rust-quickcheck-0.4. 
* gnu/packages/crates-io.scm (rust-quickcheck-0.4): New variable.
(rust-quickcheck-0.2): Inherit from rust-quickcheck-0.4.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:59 +02:00
Efraim Flashner
ba8984cf3d
gnu: rust-conv-0.3: Don't skip build. 
* gnu/packages/crates-io.scm (rust-conv-0.3)[source]: Add snippet to
relax version requirements.
[arguments]: Don't skip build.
 2020-02-25 16:48:58 +02:00
Valentin Ignatev
d3237cd302
gnu: Add rust-regex-0.1 and its cyclic dependencies. 
* gnu/packages/crates-io.scm (rust-regex-0.1, rust-aho-corasick-0.5,
rust-byteorder-0.5, rust-csv-0.14, rust-docopt-0.6, rust-memchr-0.1,
rust-utf8-ranges-0.1): New variables.
(rust-env-logger-0.3)[arguments]: Add missing input.
(rust-quickcheck-0.2)[arguments]: Don't skip build.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:58 +02:00
Valentin Ignatev
2a75243042
gnu: Add rust-obj-0.9. 
* gnu/packages/crates-io.scm (rust-obj-0.9): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:58 +02:00
Valentin Ignatev
341069bac6
gnu: Add rust-genmesh-0.6. 
* gnu/packages/crates-io.scm (rust-genmesh-0.6): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:58 +02:00
Valentin Ignatev
ef6242415b
gnu: Add rust-cgmath-0.16. 
* gnu/packages/crates-io.scm (rust-cgmath-0.16): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:57 +02:00
Valentin Ignatev
a836f50b46
gnu: Add rust-cgmath-0.17. 
* gnu/packages/crates-io.scm (rust-cgmath-0.17): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:57 +02:00
Valentin Ignatev
b2ebcacd2d
gnu: Add rust-rusttype-0.8. 
* gnu/packages/crates-io.scm (rust-rusttype-0.8): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:57 +02:00
Valentin Ignatev
a36b06561f
gnu: Add rust-line-drawing-0.7. 
* gnu/packages/crates-io.scm (rust-line-drawing-0.7): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:57 +02:00
Valentin Ignatev
d899e93052
gnu: Add rust-image-0.20. 
* gnu/packages/crates-io.scm (rust-image-0.20): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:57 +02:00
Valentin Ignatev
4e832827e2
gnu: Add rust-image-0.21. 
* gnu/packages/crates-io.scm (rust-image-0.21): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:56 +02:00
Valentin Ignatev
4aaa7e13d9
gnu: Add rust-image-0.22. 
* gnu/packages/crates-io.scm (rust-image-0.22): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:56 +02:00
Valentin Ignatev
9fba0256cb
gnu: Add rust-tiff-0.2. 
* gnu/packages/crates-io.scm (rust-tiff-0.2): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:56 +02:00
Valentin Ignatev
48748d53de
gnu: Add rust-tiff-0.3. 
* gnu/packages/crates-io.scm (rust-tiff-0.3): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:56 +02:00
Valentin Ignatev
def0676b0b
gnu: Add rust-jpeg-decoder-0.1. 
* gnu/packages/crates-io.scm (rust-jpeg-decoder-0.1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 16:48:56 +02:00
Ricardo Wurmus
788de3aec8
gnu: jamm: Update to 1.0.7.6. 
* gnu/packages/bioinformatics.scm (jamm): Update to 1.0.7.6.
 2020-02-25 15:37:27 +01:00
Mădălin Ionel Patrașcu
c51c0033d0
gnu: Add r-bsgenome-hsapiens-ncbi-grch38. 
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ncbi-grch38): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-02-25 15:37:27 +01:00
Jelle Licht
1fc47a9b49
gnu: plantuml: Update to 1.2020.1. 
* gnu/packages/uml.scm (plantuml): Update to 1.2020.1.
[arguments]<#:phases>[delete-extra-from-classpath]: Modify.
 2020-02-25 13:47:40 +01:00
Danny Milosavljevic
12f0aefd14
build-system/linux-module: Disable depmod. 
* guix/build/linux-module-build-system.scm (install): Disable depmod.
 2020-02-25 10:22:19 +01:00
Valentin Ignatev
2a9521f7cc
gnu: Add rust-png-0.12. 
* gnu/packages/crates-io.scm (rust-png-0.12): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 10:41:42 +02:00
Valentin Ignatev
b043a3404b
gnu: Add rust-png-0.14. 
* gnu/packages/crates-io.scm (rust-png-0.14): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 10:41:37 +02:00
Valentin Ignatev
c67c3a676c
gnu: Add rust-png-0.15. 
* gnu/packages/crates-io.scm (rust-png-0.15): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 10:41:08 +02:00
Valentin Ignatev
753a43c2e8
gnu: Add rust-servo-fontconfig-0.4. 
* gnu/packages/crates-io.scm (rust-servo-fontconfig-0.4):
New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 10:36:17 +02:00
Valentin Ignatev
935cfbae63
gnu: Add rust-servo-fontconfig-sys-4. 
* gnu/packages/crates-io.scm (rust-servo-fontconfig-sys-4):
New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 10:31:07 +02:00
Valentin Ignatev
448a63ee41
gnu: Add rust-servo-freetype-sys-4. 
* gnu/packages/crates-io.scm (rust-servo-freetype-sys-4): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 10:17:26 +02:00
Efraim Flashner
2a7940e83e
gnu: rust-nix-0.15: Don't skip build. 
* gnu/packages/crates-io.scm (rust-nix-0.15)[arguments]: Don't skip
build. Skip tests. Move rust-cc-1.0 from cargo-development-inputs to
cargo-inputs. Replace rust-rand-0.4 with 0.6, rust-sysctl-0.4 with 0.1
in cargo-development-inputs.
 2020-02-25 10:03:47 +02:00
Valentin Ignatev
3800d492ca
gnu: Add rust-sema-0.1. 
* gnu/packages/crates-io.scm (rust-sema-0.1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 09:51:58 +02:00
Valentin Ignatev
8b2708a566
gnu: Add rust-expat-sys-2.1. 
* gnu/packages/crates-io.scm (rust-expat-sys-2.1): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 09:44:21 +02:00
Valentin Ignatev
519c7d056c
gnu: Add rust-gif-0.10. 
* gnu/packages/crates-io.scm (rust-gif-0.10): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 09:38:24 +02:00
Valentin Ignatev
c6f876c889
gnu: Add rust-memmap-0.2. 
* gnu/packages/crates-io.scm (rust-memmap-0.2): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 09:36:51 +02:00
Valentin Ignatev
54a9682583
gnu: Add rust-color-quant-1.0. 
* gnu/packages/crates-io.scm (rust-color-quant-1.0): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2020-02-25 09:35:20 +02:00