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Author SHA1 Message Date
Tobias Geerinckx-Rice 721c5a8709
gnu: s6-linux-init: Update to 1.0.6.3. 
* gnu/packages/skarnet.scm (s6-linux-init): Update to 1.0.6.3.
 2021-05-04 16:14:15 +02:00
Tobias Geerinckx-Rice 9a12fbebb9
gnu: ethtool: Update to 5.12. 
* gnu/packages/networking.scm (ethtool): Update to 5.12.
 2021-05-04 16:12:44 +02:00
Tobias Geerinckx-Rice 8ff0d32df6
gnu: gthumb: Update to 3.10.3. 
* gnu/packages/gnome.scm (gthumb): Update to 3.10.3.
 2021-05-04 16:09:03 +02:00
Tobias Geerinckx-Rice 9432c40f8d
gnu: libhandy: Update to 1.2.2. 
* gnu/packages/gnome.scm (libhandy): Update to 1.2.2.
 2021-05-04 15:58:38 +02:00
Tobias Geerinckx-Rice 06cf2fc01f
gnu: busybox: Update to 1.33.1. 
* gnu/packages/busybox.scm (busybox): Update to 1.33.1.
[source]: Remove upstreamed patch.
* gnu/packages/patches/busybox-CVE-2021-28831.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2021-05-04 15:56:27 +02:00
Tobias Geerinckx-Rice a49a007328
gnu: indi: Stop returning #t from phases. 
* gnu/packages/astronomy.scm (indi)[arguments]: Remove #t phase return values.
 2021-05-04 15:40:33 +02:00
Tobias Geerinckx-Rice 9a40c1d5bb
gnu: indi: Respect #:tests?. 
* gnu/packages/astronomy.scm (indi)[arguments]: Respect #:tests? in the
'check phase.
 2021-05-04 15:40:33 +02:00
Tobias Geerinckx-Rice 7f540e3ce0
gnu: indi: Check slightly more functionally. 
* gnu/packages/astronomy.scm (indi)[arguments]: Substitute
WITH-DIRECTORY-EXCURSION for double CHDIR.
 2021-05-04 15:40:33 +02:00
Tobias Geerinckx-Rice ead465a312
gnu: indi: Update to 1.9.0. 
* gnu/packages/astronomy.scm (indi): Update to 1.9.0.
 2021-05-04 15:40:32 +02:00
Tobias Geerinckx-Rice abdb0210bd
gnu: bcachefs-tools: Prepare for cross-compilation. 
* gnu/packages/file-systems.scm (bcachefs-tools)[arguments]:
Use CC-FOR-TARGET and PKG-CONFIG-FOR-TARGET.
 2021-05-04 15:40:32 +02:00
Tobias Geerinckx-Rice 3d25bc8ae4
gnu: bcachefs-tools: Update to 0.1-6.a14d39d. 
* gnu/packages/file-systems.scm (bcachefs-tools): Update to 0.1-6.a14d39d.
 2021-05-04 15:40:32 +02:00
Tobias Geerinckx-Rice 71f15ca871
file-systems: Rewrite comment. 
* gnu/build/file-systems.scm (read-bcachefs-superblock): Make comment
less damned negative.
 2021-05-04 15:40:32 +02:00
Tobias Geerinckx-Rice b6269fb7bc
file-systems: Handle abnormal ‘bcachefs fsck’ exits. 
* gnu/build/file-systems.scm (check-bcachefs-file-system): Handle a STATUS:EXIT-VAL of #F.
 2021-05-04 15:40:32 +02:00
Tobias Geerinckx-Rice 2fc9d51381
gnu: bitcoin-core@0.21: Update to 0.21.1. 
* gnu/packages/finance.scm (bitcoin-core-0.21): Update to 0.21.1.
 2021-05-04 15:40:31 +02:00
Ricardo Wurmus bee797fa93
gnu: Add r-guitar. 
* gnu/packages/bioconductor.scm (r-guitar): New variable.
 2021-05-04 15:37:04 +02:00
Ricardo Wurmus 6cd9cb0e13
gnu: python-nbconvert: Simplify build phase. 
* gnu/packages/python-xyz.scm (python-nbconvert)[arguments]: Simplify build
phase "fix-paths-and-tests" by using WHICH; remove final boolean and reindent.
 2021-05-04 15:17:18 +02:00
Ricardo Wurmus 82c5d929b9
gnu: python-nbconvert: Use modular texlive packages. 
* gnu/packages/python-xyz.scm (python-nbconvert)[inputs]: Remove texlive.
[native-inputs]: Add texlive-union.
 2021-05-04 15:17:18 +02:00
Ricardo Wurmus d7ef77c8ed
gnu: Add texlive-eurosym. 
* gnu/packages/tex.scm (texlive-eurosym): New variable.
 2021-05-04 15:17:17 +02:00
Ricardo Wurmus 50bc363a76
gnu: Add texlive-tcolorbox. 
* gnu/packages/tex.scm (texlive-tcolorbox): New variable.
 2021-05-04 15:17:17 +02:00
Ricardo Wurmus be50619b30
gnu: Add texlive-adjustbox. 
* gnu/packages/tex.scm (texlive-adjustbox): New variable.
 2021-05-04 15:17:17 +02:00
Ricardo Wurmus 9855f2b975
gnu: Add texlive-collectbox. 
* gnu/packages/tex.scm (texlive-collectbox): New variable.
 2021-05-04 15:17:17 +02:00
Ricardo Wurmus 2f99cf3f38
gnu: Add texlive-storebox. 
* gnu/packages/tex.scm (texlive-storebox): New variable.
 2021-05-04 15:17:17 +02:00
Ricardo Wurmus 8e92a17431
gnu: Add texlive-ifoddpage. 
* gnu/packages/tex.scm (texlive-ifoddpage): New variable.
 2021-05-04 15:17:17 +02:00
Ricardo Wurmus 3c51abe059
gnu: Add texlive-titling. 
* gnu/packages/tex.scm (texlive-titling): New variable.
 2021-05-04 15:17:17 +02:00
Guillaume Le Vaillant 7ca996c3f5
gnu: sbcl-trivial-backtrace: Move lift to native-inputs. 
* gnu/packages/lisp-xyz.scm (sbcl-trivial-backtrace)[inputs]: Move lift to...
  [native-inputs]: ... here.
 2021-05-04 13:58:31 +02:00
Sharlatan Hellseher 4c2f810f97
gnu: sbcl-trivial-backtrace: Update to 1.1.0-1.6eb65bd 
* gnu/packages/lisp-xyz.scm (sbcl-trivial-backtrace): Update
  to 1.1.0-1.6eb65bd.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-04 13:53:03 +02:00
Sharlatan Hellseher f46b6d6487
gnu: sbcl-static-dispatch: Update to 0.5. 
* gnu/packages/lisp-xyz.scm (sbcl-static-dispatch): Update to 0.5.
  [version]: Use annotated tag of the latest release in upstream.
  [native-inputs]: Remove prove, add fiveam.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-04 13:43:02 +02:00
Sharlatan Hellseher 36d4877041
gnu: sbcl-cl-environments: Update to 0.4. 
* gnu/package/lisp-xyz.scm (sbcl-cl-environments): Update to 0.4.
  [version]: Use annotated tag instead of direct commit, there are
  upstream releases available now.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-04 13:36:55 +02:00
Ricardo Wurmus 570b3d32b9
etc: Break long lines in commit messages. 
* etc/committer.scm.in (break-string): New procedure.
(change-commit-message): Use it.
 2021-05-04 11:52:23 +02:00
Ricardo Wurmus 7694acebd1
gnu: r-summarizedexperiment: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Move variable from here...
* gnu/packages/bioconductor.scm (r-summarizedexperiment): ...to here.
 2021-05-04 10:11:34 +02:00
Ricardo Wurmus b602ec9fba
gnu: r-mixomics: Update to 6.14.1. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.14.1.
[propagated-inputs]: Add r-biocparallel.
 2021-05-04 09:47:37 +02:00
Ricardo Wurmus 4286233e77
gnu: r-catalyst: Update to 1.14.1. 
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.14.1.
 2021-05-04 09:47:37 +02:00
Ricardo Wurmus 2191a414ea
gnu: r-scran: Update to 1.18.7. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.7.
 2021-05-04 09:47:37 +02:00
Ricardo Wurmus 3c59d34107
gnu: r-biocpkgtools: Update to 1.8.2. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.8.2.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus b75b3ba2c7
gnu: r-experimenthub: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.16.1.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus c1942727cf
gnu: r-bioassayr: Update to 1.28.3. 
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.3.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus 5bd5f755f2
gnu: r-universalmotif: Update to 1.8.5. 
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.8.5.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus b410f072b5
gnu: r-icobra: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.18.1.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus b2bdc2f130
gnu: r-interactionset: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.18.1.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus 390098ddd4
gnu: r-systempiper: Update to 1.24.6. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 1.24.6.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus fc1aef2ccd
gnu: r-genomeinfodb: Update to 1.26.7. 
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.26.7.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus 8bd3170bcf
gnu: r-biocgenerics: Update to 0.36.1. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.36.1.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus d4051161e7
gnu: r-ensembldb: Update to 2.14.1. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.14.1.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus 7072dc8c53
gnu: r-gage: Update to 2.40.2. 
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.40.2.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus 3b002a49d4
gnu: r-annotationhub: Update to 2.22.1. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.22.1.
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus 8ddbf984a2
gnu: r-future-apply: Set HOME directory variable. 
* gnu/packages/cran.scm (r-future-apply)[arguments]: Add phase "set-HOME".
 2021-05-04 09:47:36 +02:00
Ricardo Wurmus 553767d02a
gnu: r-matrixstats: Set HOME directory variable. 
* gnu/packages/statistics.scm (r-matrixstats)[arguments]: Add phase
"set-HOME".
 2021-05-04 09:47:32 +02:00
Hartmut Goebel ec4012c582
gnu: sequoia: Update to 1.1.0. 
* gnu/packages/sequoia.scm (sequoia): Update to 1.1.0. [arguments]: Remove
  phase "package", add phases "fix-rand-dependency" and "fix-permissions".
 2021-05-04 09:44:14 +02:00
Ricardo Wurmus fcd002ccfa
gnu: r-pcapp: Update to 1.9-74. 
* gnu/packages/statistics.scm (r-pcapp): Update to 1.9-74.
 2021-05-04 07:27:51 +02:00
Ricardo Wurmus 685f173894
gnu: r-sfsmisc: Update to 1.1-11. 
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-11.
 2021-05-04 07:27:51 +02:00