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freebsd-ports/biology/seaview/Makefile

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- Reassign to the heap at maintainer's request
2012-10-01 16:45:16 +02:00
# Created by: frankch@waru.life.nthu.edu.tw
Change Id->FreeBSD.
1999-08-25 06:58:03 +02:00
# $FreeBSD$
Seaview is a multiple DNA sequence alignment editor. It is capable of align DNA sequences from various organisms and assign their position in the phylogenic tree. PR: ports/5229 Submitted by: Frank Chen Hsiung Chan <frankch@waru.life.nthu.edu.tw>
1997-12-21 23:04:39 +01:00
update with the new PORTNAME/PORTVERSION variables
2000-04-09 00:04:57 +02:00
PORTNAME= seaview
biology/seaview: Update version 4.5.4=>4.5.4.4
2015-05-22 13:09:23 +02:00
PORTVERSION= 4.5.4.4
- Update to version 4.4.0 - Mark MAKE_JOBS_SAFE - Make dependency on print/pdflib optional - Switch to PLIST_FILES While here: - Add missing deps - Add desktop entry PR: ports/172498 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Feature safe: yes
2012-10-30 21:31:14 +01:00
PORTEPOCH= 1
update with the new PORTNAME/PORTVERSION variables
2000-04-09 00:04:57 +02:00
CATEGORIES= biology
biology/seaview: Unbreak -- it fetches fine The second MASTER_SITES entry worked fine, so this must have been a transient fetch problem. I removed the first entry which is still failing though. Approved by: blanket
2015-04-11 17:49:57 +02:00
MASTER_SITES= ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/
- Update to version 4.4.0 - Mark MAKE_JOBS_SAFE - Make dependency on print/pdflib optional - Switch to PLIST_FILES While here: - Add missing deps - Add desktop entry PR: ports/172498 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Feature safe: yes
2012-10-30 21:31:14 +01:00
DISTNAME= ${PORTNAME}_${PORTVERSION}
Seaview is a multiple DNA sequence alignment editor. It is capable of align DNA sequences from various organisms and assign their position in the phylogenic tree. PR: ports/5229 Submitted by: Frank Chen Hsiung Chan <frankch@waru.life.nthu.edu.tw>
1997-12-21 23:04:39 +01:00
Change my non-FreeBSD MAINTAINER mail to bofh@ Approved by: bapt
2014-12-24 01:14:11 +01:00
MAINTAINER= bofh@FreeBSD.org
De-pkg-comment.
2003-02-20 18:07:10 +01:00
COMMENT= Multiple DNA/protein sequence alignment editor
Seaview is a multiple DNA sequence alignment editor. It is capable of align DNA sequences from various organisms and assign their position in the phylogenic tree. PR: ports/5229 Submitted by: Frank Chen Hsiung Chan <frankch@waru.life.nthu.edu.tw>
1997-12-21 23:04:39 +01:00
biology/seaview: UNBREAK - Update version 4.5.2=>4.5.3.4 - Add LICENSE (GPLv3) - Remove PDFLIBS as OPTIONS as it is no loner an optional requirement PR: 198602 Submitted by: pi Approved by: bapt marino (implicit)
2015-03-16 13:07:49 +01:00
LICENSE= GPLv3
Mark BROKEN: Fails to link, tries to use internal fltk symbols c++ -o seaview seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o Fl_Native_File_Chooser_FLTK.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o \ -L/usr/local/lib -lfltk_images -lfltk \ -lXft -lXext -lfontconfig -ljpeg -lpng -lXinerama -L/usr/local/lib -lpdf \ -lX11 -lm -lz -pthread seaview.o: In function `clipboard_contains_alignment(char const*)': seaview.cxx:(.text+0x1c14): undefined reference to `fl_selection_buffer' Reported by: pkg-fallout
2015-02-21 08:35:32 +01:00
biology/seaview: UNBREAK - Update version 4.5.2=>4.5.3.4 - Add LICENSE (GPLv3) - Remove PDFLIBS as OPTIONS as it is no loner an optional requirement PR: 198602 Submitted by: pi Approved by: bapt marino (implicit)
2015-03-16 13:07:49 +01:00
LIB_DEPENDS= libfltk.so:${PORTSDIR}/x11-toolkits/fltk \
libpng.so:${PORTSDIR}/graphics/png
biology/seaview: Update version 4.5.4=>4.5.4.4
2015-05-22 13:09:23 +02:00
# libpdf.so:${PORTSDIR}/print/pdflib
BROKEN: Size mismatch
2005-11-16 05:37:44 +01:00
- Update to version 4.4.0 - Mark MAKE_JOBS_SAFE - Make dependency on print/pdflib optional - Switch to PLIST_FILES While here: - Add missing deps - Add desktop entry PR: ports/172498 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Feature safe: yes
2012-10-30 21:31:14 +01:00
WRKSRC= ${WRKDIR}/${PORTNAME}
- Stage support - Update to version 4.4.3 PR: 187041 Submitted by: ports fury
2014-02-27 09:46:42 +01:00
USES= gmake
- Update to 4.4.1 PR: 177257 Submitted by: Ports Fury
2013-03-26 02:08:40 +01:00
USE_XORG= xext xft xinerama
- Update to version 4.4.0 - Mark MAKE_JOBS_SAFE - Make dependency on print/pdflib optional - Switch to PLIST_FILES While here: - Add missing deps - Add desktop entry PR: ports/172498 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Feature safe: yes
2012-10-30 21:31:14 +01:00
MAKE_ENV= HELPFILE='-DDEFAULT_HELPFILE=\"${DATADIR}/seaview.html\"' \
PHYMLNAME='-DPHYMLNAME=\"phyml\"' \
IFLTK='-I${LOCALBASE}/include' \
LFLTK='-L${LOCALBASE}/lib' \
USE_XFT='-DUSE_XFT' \
OPT="${CFLAGS}"
- Update to new version 2003.11.17 - Unbreak this port
2003-11-17 14:36:41 +01:00
ALL_TARGET= ${PORTNAME}
- Update to version 4.4.0 - Mark MAKE_JOBS_SAFE - Make dependency on print/pdflib optional - Switch to PLIST_FILES While here: - Add missing deps - Add desktop entry PR: ports/172498 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Feature safe: yes
2012-10-30 21:31:14 +01:00
- Update to 4.5.1 PR: 187975 Submitted by: Ports Fury
2014-05-21 07:40:53 +02:00
PLIST_FILES= bin/seaview man/man1/seaview.1.gz %%DATADIR%%/seaview.html \
share/pixmaps/seaview.xpm
- Update to version 4.4.0 - Mark MAKE_JOBS_SAFE - Make dependency on print/pdflib optional - Switch to PLIST_FILES While here: - Add missing deps - Add desktop entry PR: ports/172498 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Feature safe: yes
2012-10-30 21:31:14 +01:00
- Update to 4.5.1 PR: 187975 Submitted by: Ports Fury
2014-05-21 07:40:53 +02:00
DESKTOP_ENTRIES="SeaView" "" "${PREFIX}/share/pixmaps/seaview.xpm" "seaview" \
- Update to 4.5.2 - Pass maintainership to submitter PR: 190564
2014-06-04 08:28:56 +02:00
"Biology;Science;" true
- Update to 4.4.1 PR: 177257 Submitted by: Ports Fury
2013-03-26 02:08:40 +01:00
- Update to version 4.4.0 - Mark MAKE_JOBS_SAFE - Make dependency on print/pdflib optional - Switch to PLIST_FILES While here: - Add missing deps - Add desktop entry PR: ports/172498 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Feature safe: yes
2012-10-30 21:31:14 +01:00
post-patch:
biology/seaview: UNBREAK - Update version 4.5.2=>4.5.3.4 - Add LICENSE (GPLv3) - Remove PDFLIBS as OPTIONS as it is no loner an optional requirement PR: 198602 Submitted by: pi Approved by: bapt marino (implicit)
2015-03-16 13:07:49 +01:00
${REINPLACE_CMD} -e \
biology/seaview: Update version 4.5.3.4=>4.5.4 - Remove dependency for libpdf as removed by upstream
2015-03-24 11:15:30 +01:00
's|^\(CC\) |#\1 | ; \
s|^\(CXX\) |#\1 |' ${WRKSRC}/Makefile
Upgrade to 2003.01.21. Appears to only add some more file export/print options. Additional patches were necessary since the fltk port seems to have been upgraded and thus also broken this port (which would been already broken due to the checksum failure).
2003-05-22 07:59:32 +02:00
Seaview is a multiple DNA sequence alignment editor. It is capable of align DNA sequences from various organisms and assign their position in the phylogenic tree. PR: ports/5229 Submitted by: Frank Chen Hsiung Chan <frankch@waru.life.nthu.edu.tw>
1997-12-21 23:04:39 +01:00
do-install:
- Stage support - Update to version 4.4.3 PR: 187041 Submitted by: ports fury
2014-02-27 09:46:42 +01:00
(cd ${WRKSRC} && ${INSTALL_PROGRAM} seaview \
${STAGEDIR}${PREFIX}/bin)
(cd ${WRKSRC} && ${INSTALL_MAN} seaview.1 \
${STAGEDIR}${MANPREFIX}/man/man1)
biology/seaview: UNBREAK - Update version 4.5.2=>4.5.3.4 - Add LICENSE (GPLv3) - Remove PDFLIBS as OPTIONS as it is no loner an optional requirement PR: 198602 Submitted by: pi Approved by: bapt marino (implicit)
2015-03-16 13:07:49 +01:00
${MKDIR} ${STAGEDIR}${DATADIR}
- Stage support - Update to version 4.4.3 PR: 187041 Submitted by: ports fury
2014-02-27 09:46:42 +01:00
(cd ${WRKSRC} && ${INSTALL_DATA} seaview.html \
${STAGEDIR}${DATADIR})
- Update to 4.5.1 PR: 187975 Submitted by: Ports Fury
2014-05-21 07:40:53 +02:00
(cd ${WRKSRC} && ${INSTALL_DATA} seaview.xpm \
${STAGEDIR}${PREFIX}/share/pixmaps)
Seaview is a multiple DNA sequence alignment editor. It is capable of align DNA sequences from various organisms and assign their position in the phylogenic tree. PR: ports/5229 Submitted by: Frank Chen Hsiung Chan <frankch@waru.life.nthu.edu.tw>
1997-12-21 23:04:39 +01:00
.include <bsd.port.mk>
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