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freebsd-ports/biology
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Alexey Dokuchaev 856105bda2 - Fix four cases of an obvious typo: LICENSE_FILES -> LICENSE_FILE 
- While here: move knobs to their expected location, remove useless check
  for ${PORT_OPTIONS:MDOCS} when installing documentation, standardize
  Makefile headers
2015-07-25 15:06:48 +00:00
..
ariadne 6 ports categories: Remove $PTHREAD_LIBS 2015-03-24 16:01:21 +00:00
artemis
avida Use BROKEN helpers 2015-06-27 14:29:25 +00:00
babel Remove $FreeBSD$ from patches files in categories a-j. 2015-05-22 13:34:20 +00:00
bcftools New port: biology/bcftools 2015-06-05 21:01:13 +00:00
biococoa MASTER_SITES cleanup. 2015-05-14 10:15:04 +00:00
biojava
blat
chemeq
clustalw MASTER_SITES cleanup. 2015-05-14 10:15:04 +00:00
consed ${ENV} does not exist, it is called ${SETENV}. 2015-04-13 14:49:37 +00:00
crux
emboss Fix packaging as a user (pkg already takes care of credentials) 2015-03-18 21:52:19 +00:00
fasta
fasta3 - Update to 36.3.7a 2015-05-07 02:33:57 +00:00
fastdnaml
fluctuate Remove $FreeBSD$ from patches files in categories a-j. 2015-05-22 13:34:20 +00:00
garlic
gff2ps
gmap
gperiodic
grappa
hmmer - Remove deprecated option 2015-04-02 15:41:31 +00:00
htslib Update ports in the [bcd]* categories to not use GH_COMMIT. 2015-05-06 15:16:53 +00:00
iolib - Update to 1.14.0 2015-07-12 18:25:07 +00:00
jalview Remove $FreeBSD$ from patches files in categories a-j. 2015-05-22 13:34:20 +00:00
lagan - Fix shebangs 2015-06-11 10:17:24 +00:00
lamarc
libsbml - Update to 5.11.4 2015-05-12 08:58:14 +00:00
linux-foldingathome
mafft Use BROKEN helpers 2015-06-27 14:30:19 +00:00
mapm3
migrate - Update options 2015-06-28 15:30:41 +00:00
molden
mopac
mrbayes
mummer
muscle
ncbi-blast+ - Unbreak 2015-05-04 06:08:59 +00:00
ncbi-toolkit
njplot Mark as broken unfetchable ports 2015-04-05 17:55:35 +00:00
ortep3 Mark as broken unfetchable ports 2015-04-05 17:55:35 +00:00
p5-AcePerl After r390893, chmod u+w/u-w for stripping perl XS modules is unnecessary, 2015-06-29 15:47:44 +00:00
p5-Bio-ASN1-EntrezGene Start removing MASTER_SITE_SUBDIR=CPAN:username where possible. The 2015-06-24 15:16:23 +00:00
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS - Add NO_ARCH 2015-05-31 13:37:20 +00:00
p5-Bio-Phylo
p5-Bio-SCF
p5-bioperl - Fix shebangs 2015-05-30 12:31:59 +00:00
p5-bioperl-run For the new USE_GITHUB with only GH_TAGNAME set default DISTNAME to 2015-03-20 20:07:50 +00:00
paml Update biology/paml to 4.8a and unbreak. 2015-04-10 15:39:01 +00:00
phrap
phred
phylip - Fix four cases of an obvious typo: LICENSE_FILES -> LICENSE_FILE 2015-07-25 15:06:48 +00:00
phyml
platon biology/platon: Upgrade from 05 MAR 2015 => 30 MAR 2015 to unbreak 2015-04-11 15:41:22 +00:00
plink
plinkseq
povchem Remove $FreeBSD$ from patches files in categories a-j. 2015-05-22 13:34:20 +00:00
primer3
protomol - Add LICENSE 2015-06-25 09:32:18 +00:00
psi88 - Strip binaries 2015-06-03 17:27:08 +00:00
py-biopython
pycogent
pyfasta
python-nexus
recombine
ruby-bio biology/ruby-bio: mark broken with ruby 2.2 2015-04-03 13:50:38 +00:00
samtools Update ports in the [bcd]* categories to not use GH_COMMIT. 2015-05-06 15:16:53 +00:00
seaview biology/seaview: Update version 4.5.4=>4.5.4.4 2015-05-22 11:09:23 +00:00
seqan biology/segan: Limit GCC to 4.8 while waiting for update 2015-03-21 11:53:27 +00:00
seqio
seqtools biology/seqtools: 4.34.1 -> 4.35 2015-07-07 14:17:51 +00:00
sim4
ssaha
t_coffee MASTER_SITES cleanup. 2015-05-14 10:15:04 +00:00
tinker Remove $FreeBSD$ from patches files in categories a-j. 2015-05-22 13:34:20 +00:00
treepuzzle
treeviewx
tRNAscan-SE
ugene - Update Unipro UGENE to version 1.17.0 (documentation was also rerolled) 2015-07-15 07:18:08 +00:00
velvet
wise
xmolwt
Makefile New port: biology/bcftools 2015-06-05 21:01:13 +00:00