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freebsd-ports/biology/fastx-toolkit/Makefile

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The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing. WWW: http://hannonlab.cshl.edu/fastx_toolkit/ PR: 203318 Submitted by: Jason Bacon <jwbacon@tds.net>
2015-09-25 20:33:18 +02:00
PORTNAME= fastx_toolkit
PORTVERSION= 0.0.14
CATEGORIES= biology
Multiple ports: Change maintainer email bacon4000@gmail.com to jwb@FreeBSD.org Remove Created by comments for same user Approved by: jrm (mentor) Differential Revision: https://reviews.freebsd.org/D14128
2018-01-31 02:07:07 +01:00
MAINTAINER= jwb@FreeBSD.org
The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing. WWW: http://hannonlab.cshl.edu/fastx_toolkit/ PR: 203318 Submitted by: Jason Bacon <jwbacon@tds.net>
2015-09-25 20:33:18 +02:00
COMMENT= CLI tools for Short-Reads FASTA/FASTQ files preprocessing
Add WWW entries to port Makefiles It has been common practice to have one or more URLs at the end of the ports' pkg-descr files, one per line and prefixed with "WWW:". These URLs should point at a project website or other relevant resources. Access to these URLs required processing of the pkg-descr files, and they have often become stale over time. If more than one such URL was present in a pkg-descr file, only the first one was tarnsfered into the port INDEX, but for many ports only the last line did contain the port specific URL to further information. There have been several proposals to make a project URL available as a macro in the ports' Makefiles, over time. This commit implements such a proposal and moves one of the WWW: entries of each pkg-descr file into the respective port's Makefile. A heuristic attempts to identify the most relevant URL in case there is more than one WWW: entry in some pkg-descr file. URLs that are not moved into the Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr files in order to preserve them. There are 1256 ports that had no WWW: entries in pkg-descr files. These ports will not be touched in this commit. The portlint port has been adjusted to expect a WWW entry in each port Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as deprecated. Approved by: portmgr (tcberner)
2022-09-07 23:06:12 +02:00
WWW= http://hannonlab.cshl.edu/fastx_toolkit/
The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing. WWW: http://hannonlab.cshl.edu/fastx_toolkit/ PR: 203318 Submitted by: Jason Bacon <jwbacon@tds.net>
2015-09-25 20:33:18 +02:00
- Clarify LICENSE - Add LICENSE_FILE - Remove USES=tar:bzip2 (incorrect and no-op with USE_GITHUB) - Drop unneeded (and incorrect anyway) PKG_CONFIG_PATH Approved by: portmgr blanket
2016-03-24 15:12:23 +01:00
LICENSE= AGPLv3+
LICENSE_FILE= ${WRKSRC}/COPYING
The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing. WWW: http://hannonlab.cshl.edu/fastx_toolkit/ PR: 203318 Submitted by: Jason Bacon <jwbacon@tds.net>
2015-09-25 20:33:18 +02:00
Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c. With hat: portmgr Sponsored by: Absolight
2016-04-01 15:29:15 +02:00
LIB_DEPENDS= libgtextutils.so:biology/libgtextutils
The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing. WWW: http://hannonlab.cshl.edu/fastx_toolkit/ PR: 203318 Submitted by: Jason Bacon <jwbacon@tds.net>
2015-09-25 20:33:18 +02:00
- Clarify LICENSE - Add LICENSE_FILE - Remove USES=tar:bzip2 (incorrect and no-op with USE_GITHUB) - Drop unneeded (and incorrect anyway) PKG_CONFIG_PATH Approved by: portmgr blanket
2016-03-24 15:12:23 +01:00
USES= autoreconf libtool perl5 pkgconfig shebangfix
The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing. WWW: http://hannonlab.cshl.edu/fastx_toolkit/ PR: 203318 Submitted by: Jason Bacon <jwbacon@tds.net>
2015-09-25 20:33:18 +02:00
USE_PERL5= run
SHEBANG_FILES= scripts/*.pl
USE_GITHUB= yes
GH_ACCOUNT= agordon
GNU_CONFIGURE= yes
Update CONFLICTS definitions in categories a* to c* Update the CONFLICTS definitions of ports in the following categories: - accessibility - archivers - audio - benchmarks - biology - cad - chinese - comms - converters An attempt has been made to use generic conflicts patterns that do not have to be updated whenever a new version of a conflicting port is added to the ports system. There is a misunderstanding that the port being built/installed has to be omitted from the conflicts pattern. This is not true - the port being built is implicitly non-conflicting due to logic in bsd.port.mk. Approved by: portmgr (implicit)
2022-02-06 19:36:07 +01:00
CONFLICTS_INSTALL= autoconf-archive # share/aclocal/ax_c_long_long.m4
The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing. WWW: http://hannonlab.cshl.edu/fastx_toolkit/ PR: 203318 Submitted by: Jason Bacon <jwbacon@tds.net>
2015-09-25 20:33:18 +02:00
.include <bsd.port.mk>
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