freebsd-ports/biology/ssaha/files/patch-SequenceReaderString.h

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--- ./SequenceReader/SequenceReaderString.h.orig 2004-03-01 13:51:30.000000000 -0300
+++ ./SequenceReader/SequenceReaderString.h 2008-06-12 15:39:31.000000000 -0300
@@ -65,9 +65,9 @@
// NB SequenceReaderStringBase takes ownership of *pEncoder
SequenceEncoder* pEncoder,
ostream& monitoringStream = cerr ) :
+ SequenceReader( monitoringStream ),
sequenceString_( sequenceString ),
- pEncoder_( pEncoder ),
- SequenceReader( monitoringStream )
+ pEncoder_( pEncoder )
{
monitoringStream_ << "constructing SequenceReaderStringBase" << endl;
} // constructor
@@ -78,9 +78,9 @@
// TYPE NAME IN/OUT COMMENT
// Returns: TYPE COMMENT
SequenceReaderStringBase( const SequenceReaderStringBase& rhs ) :
+SequenceReader( rhs.monitoringStream_ ),
sequenceString_( rhs.sequenceString_ ),
-pEncoder_( rhs.pEncoder_->clone() ),
-SequenceReader( rhs.monitoringStream_ )
+pEncoder_( rhs.pEncoder_->clone() )
{
monitoringStream_ << "copy constructing SequenceReaderStringBase" << endl;
} // copy constructor