702ce22305
sequences. It stands for Sequence Search and Alignment by Hashing Algorithm. It achieves its fast search speed by converting sequence information into a `hash table' data structure, which can then be searched very rapidly for matches. WWW: http://www.sanger.ac.uk/Software/analysis/SSAHA/ PR: ports/124525 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> Approved by: gabor (mentor, implicit)
26 lines
1 KiB
C
26 lines
1 KiB
C
--- ./SequenceReader/SequenceReaderString.h.orig 2004-03-01 13:51:30.000000000 -0300
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+++ ./SequenceReader/SequenceReaderString.h 2008-06-12 15:39:31.000000000 -0300
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@@ -65,9 +65,9 @@
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// NB SequenceReaderStringBase takes ownership of *pEncoder
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SequenceEncoder* pEncoder,
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ostream& monitoringStream = cerr ) :
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+ SequenceReader( monitoringStream ),
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sequenceString_( sequenceString ),
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- pEncoder_( pEncoder ),
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- SequenceReader( monitoringStream )
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+ pEncoder_( pEncoder )
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{
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monitoringStream_ << "constructing SequenceReaderStringBase" << endl;
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} // constructor
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@@ -78,9 +78,9 @@
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// TYPE NAME IN/OUT COMMENT
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// Returns: TYPE COMMENT
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SequenceReaderStringBase( const SequenceReaderStringBase& rhs ) :
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+SequenceReader( rhs.monitoringStream_ ),
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sequenceString_( rhs.sequenceString_ ),
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-pEncoder_( rhs.pEncoder_->clone() ),
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-SequenceReader( rhs.monitoringStream_ )
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+pEncoder_( rhs.pEncoder_->clone() )
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{
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monitoringStream_ << "copy constructing SequenceReaderStringBase" << endl;
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} // copy constructor
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