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freebsd-ports/biology/py-biopython/Makefile

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- update to 1.60 while here: - convert Makefile header into two-line format - update COMMENT (indefinite article removed) - change USE_PYTHON to just -2.7 - remove py-reportlab from BUILD_DEPENDS and kick PYTHON_SITELIBDIR from there - tab -> space change in pkg-descr:WWW PR: 171115 Submitted by: wen Approved by: Mauricio Herrera Cuadra <mauricio at arareko dot net> (maintainer)
2012-09-25 10:06:42 +02:00
# Created by: Johann Visagie <johann@egenetics.com>
Add py-biopython, is a collection of Python packages and modules created by the Biopython Project, intended to provide the basis for building bioinformatics applications in the Python language. PR: ports/20260 Submitted by: Johann Visagie <johann@egenetics.com>
2000-07-31 14:12:24 +02:00
# $FreeBSD$
PORTNAME= biopython
- Update to 1.73 PR: 234154 Submitted by: wenheping2000@hotmail.com(myself) Approved by: maintainer
2018-12-22 05:54:51 +01:00
PORTVERSION= 1.73
Bump PORTREVISION for ports depending on the canonical version of GCC as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3 to GCC 9.1 under most circumstances now after revision 507371. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang, c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib plus, everything INDEX-11 shows with a dependency on lang/gcc9 now. PR: 238330
2019-07-26 22:46:53 +02:00
PORTREVISION= 1
Add py-biopython, is a collection of Python packages and modules created by the Biopython Project, intended to provide the basis for building bioinformatics applications in the Python language. PR: ports/20260 Submitted by: Johann Visagie <johann@egenetics.com>
2000-07-31 14:12:24 +02:00
CATEGORIES= biology python
- Update to 1.42 PR: ports/104635 Submitted by: Thomas Abthorpe <thomas@goodking.ca> Approved by: maintainer
2006-10-31 14:25:21 +01:00
MASTER_SITES= http://www.biopython.org/DIST/
Update to 1.00.a1; change MAINTAINER to my new address. Many changes to port, including addition of CORBA functionality. PR: 27957 Submitted by: Johann Visagie <johann@egenetics.com> Reviewed by: nbm
2001-06-15 15:25:56 +02:00
PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
Add py-biopython, is a collection of Python packages and modules created by the Biopython Project, intended to provide the basis for building bioinformatics applications in the Python language. PR: ports/20260 Submitted by: Johann Visagie <johann@egenetics.com>
2000-07-31 14:12:24 +02:00
Update to 1.41 Take MAINTAINER Add SHA256 PR: 88792 Submitted by: Mauricio Herrera Cuadra <mauricio@arareko.net>
2005-11-11 02:15:35 +01:00
MAINTAINER= mauricio@arareko.net
- update to 1.60 while here: - convert Makefile header into two-line format - update COMMENT (indefinite article removed) - change USE_PYTHON to just -2.7 - remove py-reportlab from BUILD_DEPENDS and kick PYTHON_SITELIBDIR from there - tab -> space change in pkg-descr:WWW PR: 171115 Submitted by: wen Approved by: Mauricio Herrera Cuadra <mauricio at arareko dot net> (maintainer)
2012-09-25 10:06:42 +02:00
COMMENT= Collection of Python modules for bioinformatics
Add py-biopython, is a collection of Python packages and modules created by the Biopython Project, intended to provide the basis for building bioinformatics applications in the Python language. PR: ports/20260 Submitted by: Johann Visagie <johann@egenetics.com>
2000-07-31 14:12:24 +02:00
biology/py-biopython: Unbreak on python3; Add license Two items prevented python3 compatibility: * Breakage of ASCII codec due to non-ascii characters in README: https://github.com/biopython/biopython/issues/1649 * The outdated dependency: print/py-reportlab1 instead of the modern version 3.X print/py-reportlab Port changes: * USES=python:2.7 -> USES=python * Add pre-configure that clears the README file * Add LICENSE/LICENSE_FILE Testing: * Ran the tutorial testcase http://biopython.org/DIST/docs/tutorial/Tutorial.html, particularly pdf writing through print/py-reportlab worked fine. Asked the upstream to clarify the acceptable dependency version: https://github.com/biopython/biopython/issues/1650 Approved by: portmgr blanket (unbreak for python3; add license)
2018-05-14 00:30:00 +02:00
LICENSE= BSD3CLAUSE
LICENSE_FILE= ${WRKSRC}/LICENSE.rst
- Update to 1.54 PR: ports/148274 Submitted by: Ju Pengfei <jupengfei@gmail.com> Approved by: maintainer Feature safe: yes
2010-07-02 04:57:19 +02:00
BUILD_DEPENDS= ${PYNUMPY}
- Update to 1.59 PR: ports/165582 Submitted by: wen@ (myself) Approved by: Mauricio Herrera Cuadra <mauricio@arareko.net> (maintainer, via email)
2012-03-06 07:40:50 +01:00
RUN_DEPENDS= ${PYNUMPY}
Update to 1.00.a1; change MAINTAINER to my new address. Many changes to port, including addition of CORBA functionality. PR: 27957 Submitted by: Johann Visagie <johann@egenetics.com> Reviewed by: nbm
2001-06-15 15:25:56 +02:00
biology/py-biopython: Unbreak on python3; Add license Two items prevented python3 compatibility: * Breakage of ASCII codec due to non-ascii characters in README: https://github.com/biopython/biopython/issues/1649 * The outdated dependency: print/py-reportlab1 instead of the modern version 3.X print/py-reportlab Port changes: * USES=python:2.7 -> USES=python * Add pre-configure that clears the README file * Add LICENSE/LICENSE_FILE Testing: * Ran the tutorial testcase http://biopython.org/DIST/docs/tutorial/Tutorial.html, particularly pdf writing through print/py-reportlab worked fine. Asked the upstream to clarify the acceptable dependency version: https://github.com/biopython/biopython/issues/1650 Approved by: portmgr blanket (unbreak for python3; add license)
2018-05-14 00:30:00 +02:00
USES= python
- Convert ports from benchmarks/ and biology/ to new USES=python Approved by: portmgr (implicit)
2014-10-19 09:38:11 +02:00
USE_PYTHON= distutils autoplist
Update to 1.00.a1; change MAINTAINER to my new address. Many changes to port, including addition of CORBA functionality. PR: 27957 Submitted by: Johann Visagie <johann@egenetics.com> Reviewed by: nbm
2001-06-15 15:25:56 +02:00
biology/py-biopython: - Convert to options framework Approved by: portmgr blanket
2015-01-19 21:21:12 +01:00
OPTIONS_DEFINE= REPORTLAB
OPTIONS_DEFAULT= REPORTLAB
REPORTLAB_DESC= PDF support in Bio.Graphics module
Use PY_FLAVOR for dependencies. FLAVOR is the current port's flavor, it should not be used outside of this scope. Sponsored by: Absolight
2018-06-20 19:05:41 +02:00
REPORTLAB_RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}reportlab>0:print/py-reportlab@${PY_FLAVOR}
biology/py-biopython: Unbreak on python3; Add license Two items prevented python3 compatibility: * Breakage of ASCII codec due to non-ascii characters in README: https://github.com/biopython/biopython/issues/1649 * The outdated dependency: print/py-reportlab1 instead of the modern version 3.X print/py-reportlab Port changes: * USES=python:2.7 -> USES=python * Add pre-configure that clears the README file * Add LICENSE/LICENSE_FILE Testing: * Ran the tutorial testcase http://biopython.org/DIST/docs/tutorial/Tutorial.html, particularly pdf writing through print/py-reportlab worked fine. Asked the upstream to clarify the acceptable dependency version: https://github.com/biopython/biopython/issues/1650 Approved by: portmgr blanket (unbreak for python3; add license)
2018-05-14 00:30:00 +02:00
pre-configure: # unbreak for python3: README.rst can't be decoded with the ascii codec: https://github.com/biopython/biopython/issues/1649
@truncate -s 0 ${WRKSRC}/README.rst
- Update to version 1.00a4 PR: 33719 Submitted by: Hye-Shik Chang <perky@fallin.lv>
2002-01-22 11:54:02 +01:00
Add py-biopython, is a collection of Python packages and modules created by the Biopython Project, intended to provide the basis for building bioinformatics applications in the Python language. PR: ports/20260 Submitted by: Johann Visagie <johann@egenetics.com>
2000-07-31 14:12:24 +02:00
.include <bsd.port.mk>
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