Commit graph

4574 commits

Author SHA1 Message Date
Mark Linimon
2f2a2d2860 These ports now build on powerpc64.
Approved by:	portmgr (tier-2 blanket)
2019-04-15 05:55:23 +00:00
Yuri Victorovich
fe285237af science/py-chempy: Update 0.7.7 -> 0.7.8
Reported by:	portscout
2019-04-14 18:47:28 +00:00
Yuri Victorovich
a76fa91399 science/nwchem: Update 6.8.1.20190403 -> 6.8.1.20190412 2019-04-13 23:55:32 +00:00
Sunpoet Po-Chuan Hsieh
59d0b61bd1 Update to 0.111
Changes:	https://metacpan.org/changes/distribution/Geo-WebService-Elevation-USGS
2019-04-13 23:45:27 +00:00
Yuri Victorovich
052b059ed9 science/erkale: Update g20190318 -> g20190412 2019-04-13 22:23:51 +00:00
Yuri Victorovich
a8244f4eb8 science/jmol: Update 14.29.34 -> 14.29.36
Reported by:	portscout
2019-04-13 14:31:02 +00:00
Jan Beich
9b21a3a084 devel/boost-*: update to 1.70.0
Changes:	http://www.boost.org/users/history/version_1_70_0.html
PR:		235956
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D19303
2019-04-12 06:36:31 +00:00
Antoine Brodin
63f5eeef8a Bump a few PORTREVISIONs after r498529
With hat:	portmgr
2019-04-10 06:18:31 +00:00
Yuri Victorovich
aaeb9d9849 science/cp2k: fix build with GCC-based architectures
PR:		237147
Submitted by:	Piotr Kubaj <pkubaj@anongoth.pl>
2019-04-10 04:21:15 +00:00
Sunpoet Po-Chuan Hsieh
40c9c7f7eb Update devel/readline to 8.0
- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://tiswww.case.edu/php/chet/readline/CHANGES
PR:		236156
Exp-run by:	antoine
2019-04-09 14:04:49 +00:00
Yuri Victorovich
2b2766e923 science/quantum-espresso: Update 6.4 -> 6.4.1
Reported by:	portscout
2019-04-09 06:25:11 +00:00
Yuri Victorovich
1a357398e8 science/octopus: Update 8.3 -> 8.4 2019-04-07 03:06:29 +00:00
Yuri Victorovich
09fd39ddc0 science/py-spglib: Update 1.12.0 -> 1.12.2 2019-04-07 02:35:10 +00:00
Yuri Victorovich
600b986c72 science/jmol: Update 14.29.32 -> 14.29.34
Reported by:	portscout
2019-04-07 01:28:15 +00:00
Max Brazhnikov
4f2027abfa science/scidavis: Update to 2.0.1 2019-04-06 16:58:57 +00:00
Max Brazhnikov
d15cc92143 - bump PORTREVISION after math/matio update 2019-04-06 16:46:17 +00:00
Yuri Victorovich
f70561658a science/cp2k: Supply the data directory needed for computation ; Change to GitHub 2019-04-06 16:28:55 +00:00
Yuri Victorovich
c18da9470d New port: science/cp2k-data: Data for cp2k quantum chemistry package 2019-04-06 16:27:13 +00:00
Yuri Victorovich
760ab9d2c6 science/nwchem: Update 6.8.1.20190319 -> 6.8.1.20190403 2019-04-06 03:48:42 +00:00
Dmitry Marakasov
a9a04b33ab - Document incompatibility with python 3.7+
Approved by:	portmgr blanket
2019-04-05 23:27:57 +00:00
Sunpoet Po-Chuan Hsieh
7d71839ddd Update to 2.0.1
Changes:	https://github.com/rgeo/rgeo-shapefile/blob/master/History.md
2019-04-05 22:45:42 +00:00
Sunpoet Po-Chuan Hsieh
40acbaa907 Update to 2.3.3
Changes:	https://github.com/spacetelescope/asdf/releases
2019-04-05 22:44:24 +00:00
Sunpoet Po-Chuan Hsieh
bf1e6eed4e Update to 1.10.5
Changes:	https://portal.hdfgroup.org/display/support/HDF5+1.10.5
2019-04-05 22:43:10 +00:00
Dmitry Marakasov
ddb930e9c1 - Document incompatibility with python 3.7+
Approved by:	portmgr blanket
2019-04-05 16:54:42 +00:00
Antoine Brodin
73a9a52a60 Remove bogus dependency, agrum links against libomp from llvm 2019-04-04 12:49:07 +00:00
Yuri Victorovich
6cd011e34b science/agrum: Correct the previous update: it didn't have the GL_COMMIT hash updated 2019-04-04 07:06:29 +00:00
Yuri Victorovich
b03f9efdc6 science/agrum: 0.14.1 -> 0.14.3 2019-04-04 05:47:55 +00:00
Yuri Victorovich
1600a9fa31 science/coot: Update 0.8.9.1 -> 0.8.9.2
* Add goocanvas dependency
* Add fftw dependency

Reported by:	portscout
2019-04-03 05:01:11 +00:00
Tobias Kortkamp
4c40458142 science/metaf2xml: Drop nop USE_PERL5=install 2019-04-01 16:08:12 +00:00
Yuri Victorovich
177d2530a2 science/vipster: Update 1.15b -> 1.16b 2019-04-01 15:57:41 +00:00
Yuri Victorovich
34d1c3d5f2 science/lammps: Update 28Feb2019 -> 29Mar2019 2019-03-31 17:33:52 +00:00
Sunpoet Po-Chuan Hsieh
73b1e3abe6 Update devel/protobuf to 3.7.1
- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/protocolbuffers/protobuf/releases
PR:		236157
Exp-run by:	antoine
2019-03-31 13:41:02 +00:00
Yuri Victorovich
95280d7fe2 New port: science/py-qcengine: Quantum chemistry program executor and IO standardizer (QCSchema) 2019-03-31 08:24:32 +00:00
Yuri Victorovich
2132087e0d New port: science/py-qcelemental: Essentials for quantum chemistry 2019-03-31 08:12:37 +00:00
Yuri Victorovich
40c378ff41 science/py-scikit-fuzzy: Update 0.4.0 -> 0.4.1
Reported by:	portscout
2019-03-31 03:19:27 +00:00
Yuri Victorovich
4f4d7d93e3 science/rdkit: Update 2018.09.2 -> 2018.09.3
Reported by:	portscout
2019-03-31 02:31:56 +00:00
Yuri Victorovich
84ae29ed0e science/qmcpack: Update 3.6.0 -> 3.7.0
Reported by:	portscout
2019-03-30 20:26:02 +00:00
Yuri Victorovich
217e12b85b science/jdftx: Fix OCTAVE option
PR:		236901
Reported by:	tobik
2019-03-30 19:52:19 +00:00
Yuri Victorovich
e7414a585c science/qbox: Update 1.66.2 -> 1.66.3
Reported by:	portscout
2019-03-30 19:43:10 +00:00
Yuri Victorovich
5680c38c53 science/jmol: Update 14.29.31 -> 14.29.32
Also add -Djava.awt.headless=true to Jave VM args.

Reported by:	portscout
2019-03-30 18:34:00 +00:00
Gleb Popov
37c76d7fcd Update science/dlib-cpp and science/py-dlib to 19.17.
Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D19761
2019-03-30 14:42:52 +00:00
Mark Linimon
a6ec0cdefb Mark broken on armv*:
gfortran8: error: iotk_base_tmp.f90: No such file or directory

Approved by:	portmgr (tier-2 blanket)
2019-03-29 23:06:42 +00:00
Mark Linimon
fe7ecf63f0 Mark broken on aarch64:
checking for ffgnrwll in -lcfitsio... no
  configure: error: could not find the cfitsio library

Approved by:	portmgr (tier-2 blanket)
2019-03-29 23:00:31 +00:00
Mark Linimon
48e339a177 Mark as broken on aarch64: fails to configure:
clang-8: error: no such file or directory: 'NOTFOUND'

Approved by:	portmgr (tier-2 blanket)
2019-03-29 22:20:47 +00:00
Mark Linimon
023651a567 Mark as broken on aarch64:
ccp4/ccp4_sysdep.h:244:4: error: "Can't determine machine number format"

Approved by:	portmgr (tier-2 blanket)
2019-03-29 21:06:52 +00:00
Jan Beich
19b83b347d Drop USES=gecko 2019-03-29 20:16:36 +00:00
Jason E. Hale
9d3404119e math/libqalculate: Update to 3.0.0
math/qalculate: Update to 3.0.0

- Bump PORTREVISION on math/libqalculate consumers due to shlib bump
2019-03-29 11:58:29 +00:00
Wen Heping
e2d65fcbe7 - Update to 0.9.4 2019-03-25 03:24:01 +00:00
Yuri Victorovich
90ed83815e science/erkale: Update g20190118 -> g20190318
Bug fixes and documentation update.
2019-03-21 06:17:51 +00:00
Yuri Victorovich
0a59de4c27 science/libcint: Update 3.0.14 -> 3.0.15
Reported by:	portscout
2019-03-20 18:04:47 +00:00
Jan Beich
03a22a5366 Switch to devel/llvm80 for DEFAULT_VERSIONS
PR:		235215
2019-03-20 12:23:25 +00:00
Yuri Victorovich
9f7122b967 science/nwchem: Update 6.8.1.20190314 -> 6.8.1.20190319
Add 'test' target.
2019-03-19 23:18:35 +00:00
Yuri Victorovich
effd6586da science/molsketch: Update 0.5.2 -> 0.6.0
Reported by:	portscout
2019-03-19 06:19:42 +00:00
Yuri Victorovich
ce30afb630 Re-add science/py-veusz: the latest version builds with Qt5 2019-03-17 20:32:18 +00:00
Sunpoet Po-Chuan Hsieh
0eea040532 Add py-geometer 0.1.2
Geometer is a geometry library for Python 3 that uses projective geometry and
numpy for fast geometric computation. In projective geometry every point in 2D
is represented by a three-dimensional vector and every point in 3D is
represented by a four-dimensional vector. This has the following advantages:

There are points at infinity that can be treated just like normal points.
- Projective transformations are described by matrices but they can also
  represent affine transformations i.e. also translations.
- Every two lines have a unique point of intersection if they lie in the same
  plane. Parallel lines have a point of intersection at infinity.
- Points of intersection, planes or lines through given points can be calculated
  using simple cross products or tensor diagrams.
- Special complex points at infinity and cross ratios can be used to calculate
  angles and to construct perpendicular geometric structures.
- Most of the computation in the library done via tensor diagrams (using
  numpy.einsum).

WWW: https://github.com/jan-mue/geometer
2019-03-17 18:21:39 +00:00
Yuri Victorovich
080d970c00 science/lammps: Update 12Dec2018 -> 28Feb2019 2019-03-17 17:32:57 +00:00
Yuri Victorovich
806dd326a8 science/nwchem: 6.8.1.20190222 (d8ac0a182) -> 6.8.1.20190314 (b959e5ee0) 2019-03-17 01:35:30 +00:00
Tobias C. Berner
369eb054b0 Qt4 deprecation: Remove Qt4 and its consumes.
2019-03-15 accessibility/qt4-accessible: Qt4 has been EOL since december 2015
2019-03-15 astro/qlandkartegt: Qt4 has been EOL since december 2015
2019-03-15 astro/stellarium-qt4: Qt4 has been EOL since december 2015
2019-03-15 astro/xglobe: Qt4 has been EOL since december 2015
2019-03-15 audio/acoustid-fingerprinter: Qt4 has been EOL since december 2015
2019-03-15 audio/cueplayer: Qt4 has been EOL since december 2015
2019-03-15 audio/esperanza: Qt4 has been EOL since december 2015
2019-03-15 audio/lastfm-desktop: Qt4 has been EOL since december 2015
2019-03-15 audio/minitunes: Qt4 has been EOL since december 2015
2019-03-15 audio/mixxx20: Qt4 has been EOL since december 2015
2019-03-15 audio/mumble: Qt4 has been EOL since december 2015
2019-03-15 audio/murmur: Qt4 has been EOL since december 2015
2019-03-15 audio/puddletag: Qt4 has been EOL since december 2015
2019-03-15 audio/qmpdclient: Qt4 has been EOL since december 2015
2019-03-15 audio/skype-call-recorder: Qt4 has been EOL since december 2015
2019-03-15 audio/virtual_oss_ctl: Qt4 has been EOL since december 2015
2019-03-15 biology/clustalx: Qt4 has been EOL since december 2015
2019-03-15 cad/klayout: Qt4 has been EOL since december 2015
2019-03-15 cad/layouteditor: Qt4 has been EOL since december 2015
2019-03-15 cad/leocad: Qt4 has been EOL since december 2015
2019-03-15 cad/meshlab: Qt4 has been EOL since december 2015
2019-03-15 cad/qfsm: Qt4 has been EOL since december 2015
2019-03-15 cad/qucs: Qt4 has been EOL since december 2015
2019-03-15 chinese/gcin-qt4: Qt4 has been EOL since december 2015
2019-03-15 chinese/qt4-codecs-cn: Qt4 has been EOL since december 2015
2019-03-15 chinese/qt4-codecs-tw: Qt4 has been EOL since december 2015
2019-03-15 chinese/qterm: Qt4 has been EOL since december 2015
2019-03-15 comms/dabstick-radio: Qt4 has been EOL since december 2015
2019-03-15 comms/hamfax: Qt4 has been EOL since december 2015
2019-03-15 comms/linpsk: Qt4 has been EOL since december 2015
2019-03-15 databases/py-qt4-sql: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-ibase-plugin: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-mysql-plugin: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-odbc-plugin: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-pgsql-plugin: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-sql: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-sqlite-plugin: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-sqlite3-plugin: Qt4 has been EOL since december 2015
2019-03-15 databases/sqliteman: Qt4 has been EOL since december 2015
2019-03-15 databases/tora: Qt4 has been EOL since december 2015
2019-03-15 deskutils/cdcat: Qt4 has been EOL since december 2015
2019-03-15 deskutils/fbreader: Qt4 has been EOL since december 2015
2019-03-15 deskutils/launchy: Qt4 has been EOL since december 2015
2019-03-15 deskutils/qorganizer: Qt4 has been EOL since december 2015
2019-03-15 deskutils/qrfcview: Qt4 has been EOL since december 2015
2019-03-15 deskutils/qtm: Qt4 has been EOL since december 2015
2019-03-15 deskutils/tuxcards: Qt4 has been EOL since december 2015
2019-03-15 deskutils/vym: Qt4 has been EOL since december 2015
2019-03-15 devel/apiextractor: Qt4 has been EOL since december 2015
2019-03-15 devel/automoc4: Qt4 has been EOL since december 2015
2019-03-15 devel/edb: Qt4 has been EOL since december 2015
2019-03-15 devel/generatorrunner: Qt4 has been EOL since december 2015
2019-03-15 devel/grantlee: Qt4 has been EOL since december 2015
2019-03-15 devel/gwenhywfar-qt4: Qt4 has been EOL since december 2015
2019-03-15 devel/kaptain: Qt4 has been EOL since december 2015
2019-03-15 devel/ninja-ide: Qt4 has been EOL since december 2015
2019-03-12 devel/physfs-devel: is the same as devel/physfs, serving no purpose
2019-03-15 devel/piklab: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-assistant: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-core: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-dbus: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-dbussupport: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-declarative: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-designer: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-designerplugin: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-help: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-qscintilla2: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-script: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-scripttools: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-test: Qt4 has been EOL since december 2015
2019-03-15 devel/pyside: Qt4 has been EOL since december 2015
2019-03-15 devel/pyside-tools: Qt4 has been EOL since december 2015
2019-03-15 devel/qbzr: Qt4 has been EOL since december 2015
2019-03-15 devel/qct: Qt4 has been EOL since december 2015
2019-03-15 devel/qdevelop: Qt4 has been EOL since december 2015
2019-03-15 devel/qprog: Qt4 has been EOL since december 2015
2019-03-15 devel/qross: Qt4 has been EOL since december 2015
2019-03-15 devel/qscintilla2: Qt4 has been EOL since december 2015
2019-03-15 devel/qscintilla2-designerplugin: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-assistant: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-assistant-adp: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-corelib: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-dbus: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-designer: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-help-tools: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-libqtassistantclient: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-linguist: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-linguisttools: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-makeqpf: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-moc: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-porting: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qdbusviewer: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qdoc3: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qmake: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qmlviewer: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qt3support: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qtsolutions-singleapplication: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qtsolutions-soap: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qvfb: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-rcc: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-script: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-scripttools: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-testlib: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-uic: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-uic3: Qt4 has been EOL since december 2015
2019-03-15 devel/qtscriptgenerator: Qt4 has been EOL since december 2015
2019-03-15 devel/shiboken: Qt4 has been EOL since december 2015
2019-03-15 devel/subcommander2: Qt4 has been EOL since december 2015
2019-03-15 devel/universalindentgui: Qt4 has been EOL since december 2015
2019-03-15 editors/leo: Qt4 has been EOL since december 2015
2019-03-15 editors/lfhex: Qt4 has been EOL since december 2015
2019-03-15 editors/plume-creator-devel: Qt4 has been EOL since december 2015
2019-03-15 editors/textroom: Qt4 has been EOL since december 2015
2019-03-15 editors/yzis: Qt4 has been EOL since december 2015
2019-03-15 emulators/dboxfe: Qt4 has been EOL since december 2015
2019-03-15 emulators/q4wine: Qt4 has been EOL since december 2015
2019-03-15 emulators/qtemu: Qt4 has been EOL since december 2015
2019-03-15 emulators/swine: Qt4 has been EOL since december 2015
2019-03-15 finance/alkimia-qt4: Qt4 has been EOL since december 2015
2019-03-15 finance/bitcoin-armory: Qt4 has been EOL since december 2015
2019-03-15 finance/qhacc: Qt4 has been EOL since december 2015
2019-03-15 ftp/scythia: Qt4 has been EOL since december 2015
2019-03-15 games/bubble-chains: Qt4 has been EOL since december 2015
2019-03-15 games/capicity: Qt4 has been EOL since december 2015
2019-03-15 games/capitalism: Qt4 has been EOL since december 2015
2019-03-15 games/flukz: Qt4 has been EOL since december 2015
2019-03-15 games/goldencheetah: Qt4 has been EOL since december 2015
2019-03-15 games/jag: Qt4 has been EOL since december 2015
2019-03-15 games/kardsgt: Qt4 has been EOL since december 2015
2019-03-15 games/kcheckers: Qt4 has been EOL since december 2015
2019-03-15 games/openpref: Qt4 has been EOL since december 2015
2019-03-15 games/pokerth: Qt4 has been EOL since december 2015
2019-03-15 games/qgo: Qt4 has been EOL since december 2015
2019-03-15 games/qtads: Qt4 has been EOL since december 2015
2019-03-15 games/quackle: Qt4 has been EOL since december 2015
2019-03-15 games/spellathon: Qt4 has been EOL since december 2015
2019-03-15 games/sudoku-sensei: Qt4 has been EOL since december 2015
2019-03-15 games/tbe: Qt4 has been EOL since december 2015
2019-03-15 games/xptools: Qt4 has been EOL since december 2015
2019-03-15 german/tipp10: Qt4 has been EOL since december 2015
2019-03-15 graphics/appleseed: Qt4 has been EOL since december 2015
2019-03-15 graphics/aqsis: Qt4 has been EOL since december 2015
2019-03-15 graphics/autoq3d: Qt4 has been EOL since december 2015
2019-03-15 graphics/burplex: Qt4 has been EOL since december 2015
2019-03-15 graphics/darknock: Qt4 has been EOL since december 2015
2019-03-15 graphics/djview4-qt4: Qt4 has been EOL since december 2015
2019-03-15 graphics/easypaint: Qt4 has been EOL since december 2015
2019-03-15 graphics/eos-movrec: Qt4 has been EOL since december 2015
2019-03-15 graphics/gle-graphics: Qt4 has been EOL since december 2015
2019-03-15 graphics/lprof-devel: Qt4 has been EOL since december 2015
2019-03-15 graphics/luminance: Qt4 has been EOL since december 2015
2019-03-15 graphics/luxrender: Qt4 has been EOL since december 2015
2019-03-15 graphics/luxrender14: Qt4 has been EOL since december 2015
2019-03-15 graphics/meshviewer: Qt4 has been EOL since december 2015
2019-03-15 graphics/natron: Qt4 has been EOL since december 2015
2019-03-15 graphics/oyranos: Qt4 has been EOL since december 2015
2019-03-15 graphics/pencil: Qt4 has been EOL since december 2015
2019-03-15 graphics/prison: Qt4 has been EOL since december 2015
2019-03-15 graphics/py-qt4-svg: Qt4 has been EOL since december 2015
2019-03-15 graphics/qt4-iconengines: Qt4 has been EOL since december 2015
2019-03-15 graphics/qt4-imageformats: Qt4 has been EOL since december 2015
2019-03-15 graphics/qt4-opengl: Qt4 has been EOL since december 2015
2019-03-15 graphics/qt4-pixeltool: Qt4 has been EOL since december 2015
2019-03-15 graphics/qt4-svg: Qt4 has been EOL since december 2015
2019-03-15 graphics/qxv: Qt4 has been EOL since december 2015, qxv is unmaintained
2019-03-15 graphics/scantailor: Qt4 has been EOL since december 2015
2019-03-15 graphics/seexpr: Qt4 has been EOL since december 2015
2019-03-15 graphics/smillaenlarger: Qt4 has been EOL since december 2015
2019-03-15 graphics/structuresynth: Qt4 has been EOL since december 2015
2019-03-15 graphics/yagf: Qt4 has been EOL since december 2015
2019-03-15 japanese/qt4-codecs-jp: Qt4 has been EOL since december 2015
2019-03-15 korean/qt4-codecs-kr: Qt4 has been EOL since december 2015
2019-03-15 mail/qgmailnotifier: Qt4 has been EOL since december 2015
2019-03-15 math/qtiplot: Qt4 has been EOL since december 2015
2019-03-15 math/qtoctave: Qt4 has been EOL since december 2015
2019-03-15 math/qwtplot3d-qt4: Qt4 has been EOL since december 2015
2019-03-15 misc/py-qt4-demo: Qt4 has been EOL since december 2015
2019-03-15 misc/py-qt4-doc: Qt4 has been EOL since december 2015
2019-03-15 misc/qmetro: Qt4 has been EOL since december 2015
2019-03-15 misc/qt4-doc: Qt4 has been EOL since december 2015
2019-03-15 misc/qt4-l10n: Qt4 has been EOL since december 2015
2019-03-15 misc/qt4-qtconfig: Qt4 has been EOL since december 2015
2019-03-15 misc/qt4-qtdemo: Qt4 has been EOL since december 2015
2019-03-15 misc/saaghar: Qt4 has been EOL since december 2015
2019-03-15 multimedia/2mandvd: Qt4 has been EOL since december 2015
2019-03-15 multimedia/abby: Qt4 has been EOL since december 2015
2019-03-15 multimedia/avidemux-qt4: Qt4 has been EOL since december 2015
2019-03-15 multimedia/gstreamer-qt4: Qt4 has been EOL since december 2015
2019-03-15 multimedia/mediadownloader: Qt4 has been EOL since december 2015
2019-03-15 multimedia/mlt-qt4: Qt4 has been EOL since december 2015
2019-03-15 multimedia/phonon-xine: Qt4 has been EOL since december 2015
2019-03-15 multimedia/py-qt4-multimedia: Qt4 has been EOL since december 2015
2019-03-15 multimedia/py-qt4-phonon: Qt4 has been EOL since december 2015
2019-03-15 multimedia/qmmp: Qt4 has been EOL since december 2015
2019-03-15 multimedia/qmmp-plugin-pack: Qt4 has been EOL since december 2015
2019-03-15 multimedia/qt4-mobility: Qt4 has been EOL since december 2015
2019-03-15 multimedia/qt4-multimedia: Qt4 has been EOL since december 2015
2019-03-15 multimedia/umplayer: Qt4 has been EOL since december 2015
2019-03-15 net/avahi-qt4: Qt4 has been EOL since december 2015
2019-03-15 net/cagibi: Qt4 has been EOL since december 2015
2019-03-15 net/hupnp: Qt4 has been EOL since december 2015
2019-03-15 net/ostinato: Qt4 has been EOL since december 2015
2019-03-15 net/py-qt4-network: Qt4 has been EOL since december 2015
2019-03-15 net/qjsonrpc: Qt4 has been EOL since december 2015
2019-03-15 net/qoauth: Qt4 has been EOL since december 2015
2019-03-15 net/qt4-network: Qt4 has been EOL since december 2015
2019-03-15 net/qtweetlib: Qt4 has been EOL since december 2015
2019-03-15 net-im/libjreen: Qt4 has been EOL since december 2015
2019-03-15 net-im/psimedia: Qt4 has been EOL since december 2015
2019-03-15 net-im/ramblercontacts: Qt4 has been EOL since december 2015
2019-03-15 net-im/telepathy-logger-qt4: Qt4 has been EOL since december 2015
2019-03-15 net-im/turpial: Qt4 has been EOL since december 2015
2019-03-15 net-im/vacuum-im: Qt4 has been EOL since december 2015
2019-03-15 net-mgmt/nagiosagent: Qt4 has been EOL since december 2015
2019-03-15 net-mgmt/qkismet: Qt4 has been EOL since december 2015
2019-03-15 net-p2p/bitmessage: Qt4 has been EOL since december 2015
2019-03-15 net-p2p/eiskaltdcpp-qt: Qt4 has been EOL since december 2015
2019-03-15 net-p2p/valknut: Qt4 has been EOL since december 2015
2019-03-15 polish/qfaktury: Qt4 has been EOL since december 2015
2019-03-15 print/kpdftool: Qt4 has been EOL since december 2015
2019-03-15 print/scribus: Qt4 has been EOL since december 2015
2019-03-15 science/MOOSE-neural-simulator: Qt4 has been EOL since december 2015
2019-03-15 science/avogadro: Qt4 has been EOL since december 2015
2019-03-15 science/openstructure: Qt4 has been EOL since december 2015
2019-03-15 science/py-veusz: Qt4 has been EOL since december 2015
2019-03-15 science/qtresistors: Qt4 has been EOL since december 2015
2019-03-15 security/keepassx2: Qt4 has been EOL since december 2015
2019-03-15 security/kqoauth: Qt4 has been EOL since december 2015
2019-03-15 security/tpmmanager: Qt4 has been EOL since december 2015
2019-03-15 sysutils/android-file-transfer-qt4: Qt4 has been EOL since december 2015
2019-03-15 sysutils/bacula9-bat: Qt4 has been EOL since december 2015
2019-03-15 sysutils/bareos-traymonitor: Qt4 has been EOL since december 2015
2019-03-15 sysutils/bareos16-bat: Qt4 has been EOL since december 2015
2019-03-15 sysutils/bareos16-traymonitor: Qt4 has been EOL since december 2015
2019-03-15 sysutils/policykit-qt: Qt4 has been EOL since december 2015
2019-03-15 sysutils/qpxtool: Qt4 has been EOL since december 2015
2019-03-15 sysutils/qsynergy: Qt4 has been EOL since december 2015
2019-03-15 sysutils/qzeitgeist: Qt4 has been EOL since december 2015
2019-03-15 sysutils/searchmonkey: Qt4 has been EOL since december 2015
2019-03-15 sysutils/unetbootin: Qt4 has been EOL since december 2015
2019-03-15 textproc/beediff: Qt4 has been EOL since december 2015
2019-03-15 textproc/dixit: Qt4 has been EOL since december 2015
2019-03-15 textproc/goldendict: Qt4 has been EOL since december 2015
2019-03-15 textproc/ibus-qt: Qt4 has been EOL since december 2015
2019-03-15 textproc/py-qt4-xml: Qt4 has been EOL since december 2015
2019-03-15 textproc/py-qt4-xmlpatterns: Qt4 has been EOL since december 2015
2019-03-15 textproc/qt4-clucene: Qt4 has been EOL since december 2015
2019-03-15 textproc/qt4-xml: Qt4 has been EOL since december 2015
2019-03-15 textproc/qt4-xmlpatterns: Qt4 has been EOL since december 2015
2019-03-15 textproc/qt4-xmlpatterns-tool: Qt4 has been EOL since december 2015
2019-03-15 textproc/scim-bridge-qt4: Qt4 has been EOL since december 2015
2019-03-15 textproc/uim-qt4: Qt4 has been EOL since december 2015
2019-03-15 textproc/xxdiff: Qt4 has been EOL since december 2015
2019-03-15 www/aria2fe: Qt4 has been EOL since december 2015
2019-03-15 www/cutycapt: Qt4 has been EOL since december 2015
2019-03-15 www/py-qt4-webkit: Qt4 has been EOL since december 2015
2019-03-15 www/qt4-webkit: Qt4 has been EOL since december 2015
2019-03-15 www/qupzilla-qt4: Qt4 has been EOL since december 2015
2019-03-15 x11/leechcraft: Qt4 has been EOL since december 2015
2019-03-15 x11/py-qt4-opengl: Qt4 has been EOL since december 2015
2019-03-15 x11/qimageblitz: Qt4 has been EOL since december 2015
2019-03-15 x11/qt4-graphicssystems-opengl: Qt4 has been EOL since december 2015
2019-03-15 x11/qt4-inputmethods: Qt4 has been EOL since december 2015
2019-03-15 x11/qxkb: Qt4 has been EOL since december 2015
2019-03-15 x11-fonts/fontmatrix: Qt4 has been EOL since december 2015
2019-03-15 x11-themes/qt4-style-float: Qt4 has been EOL since december 2015
2019-03-15 x11-themes/qt4-style-phase: Qt4 has been EOL since december 2015
2019-03-15 x11-themes/qt4-style-quantumstyle: Qt4 has been EOL since december 2015
2019-03-15 x11-themes/qtcurve-qt4: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/attica: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/py-qt4-gui: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/qt4-declarative: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/qt4-gui: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/qt4pas: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/qwt5: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/qwt5-designerplugin: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/soqt: Qt4 has been EOL since december 2015
2019-03-15 x11-wm/qlwm: Qt4 has been EOL since december 2015

Approved by:	portmgr (implicit)
2019-03-16 21:55:51 +00:00
Tobias C. Berner
a4d40c53c4 science/libgeodecomp: remove QT4 option (Qt4 drpecation) 2019-03-16 18:00:13 +00:00
Tobias C. Berner
704a3bb184 science/kst2: remove QT4/QT5 options (Qt4 deprecation)
Approved by:	portmgr (implicit)
2019-03-16 17:54:45 +00:00
Yuri Victorovich
71d065a55b science/py-gsd: Update 1.6.0 -> 1.6.1
Reported by:	portscout
2019-03-16 16:03:11 +00:00
Yuri Victorovich
25622ad4bf science/sparta: Update 29Oct2018 -> 15Feb2019
Add PORTSCOUT=ignore.
2019-03-16 16:00:50 +00:00
Yuri Victorovich
7b4b39ae1f science/tinker: Update 8.5.3 -> 8.6.1
Move Makefile sections to proper places to pet portlint.

Reported by:	portscout
2019-03-16 15:50:33 +00:00
Tobias C. Berner
777523e72c science/silo: remove QT4 option (Qt4 deprecation)
Approved by:	portmgr (implicit)
2019-03-16 14:06:23 +00:00
Yuri Victorovich
23fc7cf349 science/coordgenlibs: Update 1.2.1 -> 1.2.2
Reported by:	portscout
2019-03-16 05:51:15 +00:00
Mathieu Arnold
ca99d08fef Remove unused USE_PYTHON values.
Reported by:	tobik (in D19569)
2019-03-13 13:03:11 +00:00
Mark Linimon
42a4ffa4e7 Fix build on gcc-based architectures:
/usr/local/lib/libgraphite2.so.3: undefined reference to `__cxa_throw_bad_array_new_length@CXXABI_1.3.8'
2019-03-13 05:13:22 +00:00
Mark Linimon
68fe12fc41 Fix build on gcc-based architectures:
C++11 is required to use dlib, but the version of GCC you are using is too old and doesn't support C++11.  You need GCC 4.8 or newer.

Approved by:	portmgr (tier-2 blanket)
2019-03-13 05:10:05 +00:00
Mark Linimon
2a08c8fce6 Fix build on gcc-based architectures:
//usr/local/lib/libgraphite2.so.3: undefined reference to `__cxa_throw_bad_array_new_length@CXXABI_1.3.8'

While here, pet portlint.
2019-03-13 05:09:02 +00:00
Stephen Montgomery-Smith
93c37d228f - Update devel/gdcm to 2.8.9.
- Bump portrevision for dependent ports.
2019-03-10 00:48:01 +00:00
Yuri Victorovich
8cc0cedbc9 science/massxpert: Update 3.4.0 -> 3.6.1
This software seems to be abandoned by its upstream, and rescued by the Debian team.
I've set its source to Debian's GitLab server, where they source it from now.

Port changes:
* 3.6.1 is Qt5-based: remove the DEPRECATED lines
* USE_GCC seems to be needed due to clang error messages
* MAKE_JOBS_UNSAFE isn't needed
2019-03-09 23:23:33 +00:00
Sunpoet Po-Chuan Hsieh
793cacab37 Update to 2.0.1
Changes:	https://github.com/rgeo/rgeo/blob/master/History.md
2019-03-09 12:09:33 +00:00
Tobias C. Berner
3d439985af Update KDE Applications to 18.12.3 2019-03-07 18:35:32 +00:00
Rene Ladan
01e4c04538 Remove expired ports:
2019-03-05 devel/elixir-lager_logger: Broken for more than 6 months
2019-03-05 devel/gpsim: Broken for more than 6 months
2019-03-05 devel/hgview: Broken for more than 6 months
2019-03-05 games/mudmagic: Broken for more than 6 months
2019-03-05 math/mumps-mpich: Broken for more than 6 months
2019-03-05 math/sdpara: Broken for more than 6 months
2019-03-05 net/tn5250j: Broken for more than 6 months
2019-03-05 net-im/pidgin-skype: Broken for more than 6 months
2019-03-05 net-im/skype: Broken for more than 6 months
2019-03-05 net-im/skype-devel: Broken for more than 6 months
2019-03-05 science/dft_tools: Broken for more than 6 months
2019-03-05 science/triqs: Broken for more than 6 months
2019-03-05 security/hamachi: Broken for more than 6 months
2019-03-05 textproc/elixir-ex_doc: Broken for more than 6 months
2019-03-05 x11/altyo: Broken for more than 6 months
2019-03-05 x11/pantheon-terminal: Broken for more than 6 months
2019-03-05 x11-wm/e-module-everything-websearch: Broken for more than 6 months
2019-03-06 21:49:00 +00:00
Thierry Thomas
1b7c99c8f1 - Upgrade science/cgnslib to 3.4.0
Release notes at <https://github.com/CGNS/CGNS/releases/tag/v3.4.0>.

- Split tests and fortran option

- Bump PORTREVISION of consumers.
2019-03-06 19:49:56 +00:00
Yuri Victorovich
6c2156fa1d science/dvc: Update 0.30.0 -> 0.30.1
Reported by:	portscout
2019-03-06 03:48:42 +00:00
Yuri Victorovich
5db7479d7d science/quantum-espresso: Update 6.3 -> 6.4
Reported by:	portscout
2019-03-06 03:17:45 +00:00
Antoine Brodin
630fe1e7af Update devel/doxygen to 1.8.15
PR:		236110
2019-03-05 21:20:27 +00:00
Jan Beich
89f8f8dff8 science/hypre: unbreak with libc++ 8
In file included from FEI_HYPRE_Impl.cxx:22:
In file included from /usr/include/c++/v1/math.h:309:
In file included from /usr/include/c++/v1/type_traits:406:
In file included from /usr/include/c++/v1/cstddef:38:
./../../utilities/version:1:2: error: invalid preprocessing directive
 #!/bin/sh
  ^
./../../utilities/version:2:2: error: invalid preprocessing directive
 #BHEADER**********************************************************************
  ^
./../../utilities/version:3:3: error: invalid preprocessing directive
 # Copyright (c) 2008,  Lawrence Livermore National Security, LLC.
   ^
[...]

PR:		236192
Approved by:	portmgr blanket
2019-03-04 18:35:02 +00:00
Yuri Victorovich
c3785365f5 science/wxmacmolplt: Unbreak, it was crashing with WX-3.1
Reported by:	fallout
2019-03-03 08:06:44 +00:00
Yuri Victorovich
5abf98ee22 science/dvc: Update 0.29.0 -> 0.30.0
Reported by:	portscout
2019-03-03 07:00:08 +00:00
Yuri Victorovich
840f456a20 science/abinit: Broken on i386
Reported by:	fallout
2019-03-02 23:43:01 +00:00
Sunpoet Po-Chuan Hsieh
a5990240e0 Update science/netcdf to 4.6.3
- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/Unidata/netcdf-c/releases
		https://github.com/Unidata/netcdf-c/blob/master/RELEASE_NOTES.md
2019-03-02 17:45:58 +00:00
Thierry Thomas
9405a509cd Upgrade to 5.3.2.
Release notes at
https://github.com/code-saturne/code_saturne/blob/v5.3/NEWS.md#release-532---january-29-2019
2019-03-02 17:04:19 +00:00
Yuri Victorovich
f05b1369dc science/coordgenlibs: Update 1.2 -> 1.2.1
Reported by:	portscout
2019-03-02 07:14:19 +00:00
Yuri Victorovich
1c1562bdfd science/maeparser: Update 1.0.1 -> 1.1
Reported by:	portscout
2019-03-02 07:13:36 +00:00
Wen Heping
84043117ea - Update to 1.1.1 2019-02-28 07:18:24 +00:00
Yuri Victorovich
dc46e2ab12 science/qbox: fix build on powerpc*
PR:		236078
Submitted by:	Piotr Kubaj <pkubaj@anongoth.pl>
2019-02-28 04:32:33 +00:00
Ruslan Makhmatkhanov
6151a91aa7 science/py-lifelines: update to 0.19.5 2019-02-27 22:12:09 +00:00
Thierry Thomas
4b7e9b8341 - Add USES=compiler:c11 to fix build on GCC architectures;
- Add USES=gl gnome localbase:ldflags;

- CUSE_GL to gl and glu.

PR:		236075
Submitted by:	pkubaj (at) anongoth.pl
2019-02-27 20:48:49 +00:00
Tobias Kortkamp
1e28682661 science/p5-Mcstas-Tools: Merge {do,post}-install 2019-02-27 13:15:02 +00:00
Tobias Kortkamp
cf49d73be3 science/p5-Mcstas-Tools: Update to 2.5
PR:		235858
Submitted by:	Erik B Knudsen <erkn@fysik.dtu.dk> (maintainer)
2019-02-27 13:09:13 +00:00
Yuri Victorovich
dc73dfedce science/abinit: Add the 'test' target 2019-02-27 06:09:17 +00:00
Yuri Victorovich
96709c3304 science/abinit: Add OPENMP and MPI options 2019-02-27 05:37:33 +00:00
Yuri Victorovich
246709a37f science/nwchem: Update 6.8.1.20190125 -> 6.8.1.20190222
Enable USES=perl5 because otherwise the executable is broken.
2019-02-26 08:34:30 +00:00
Baptiste Daroussin
03674d483c Unmark as broken now that wxgtk31 is hooked into the framework 2019-02-25 12:53:00 +00:00
Baptiste Daroussin
89bc7fbdd1 wxGTK3.0: switch to gtk3 and webkit2
Discussed with:	portmgr
2019-02-25 12:47:20 +00:00
Yuri Victorovich
3548279ace science/vipster: Update 1.14.1a -> 1.15b 2019-02-24 19:42:02 +00:00
Sunpoet Po-Chuan Hsieh
c8d0e232bb Update to 2.0.0
Changes:	https://github.com/rgeo/rgeo-shapefile/blob/master/History.md
2019-02-24 17:56:50 +00:00
Sunpoet Po-Chuan Hsieh
7c03f775c4 Update to 2.1.1
- Changed version to 2.1.1
- CMake support added, which allows for shared or static builds
- CMake dual-binary code added to build both static and shared
2019-02-24 17:56:03 +00:00
Gleb Popov
c1182d0c7d science/dlib-cpp and science/py-dlib: Update to 19.16.
Try to fix build of science/py-dlib on ARM archs.

Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D19307
2019-02-23 16:19:52 +00:00
Yuri Victorovich
9d6400649d science/py-quantities: Update 0.12.2 -> 0.12.3
Reported by:	portscout
2019-02-23 16:06:52 +00:00
Yuri Victorovich
af20cdd741 science/rdkit: Update 2018_09_1 -> 2018_09_2
Reported by:	portscout
2019-02-23 07:33:55 +00:00
Sunpoet Po-Chuan Hsieh
bd3d63c00d Update to 1.2.0
Changes:	https://github.com/rgeo/rgeo-shapefile/blob/master/History.md
2019-02-22 19:55:05 +00:00
Baptiste Daroussin
e9122e6079 Backout r493559
Bad grep foo sorry

Pointyhar:	bapt
2019-02-22 08:12:39 +00:00
Baptiste Daroussin
3029b20865 Remove USE_GNOME=gnomemimedata which wasn't doing anything anymore 2019-02-22 08:07:34 +00:00
Yuri Victorovich
47b9cbf4cb science/abinit: Update 8.10.2 -> 8.10.3
Reported by:	portscout
2019-02-22 05:46:15 +00:00
Yuri Victorovich
27b462bfad science/dvc: Update 0.28.2 -> 0.29.0
Reported by:	portscout
2019-02-22 05:18:38 +00:00
Kai Knoblich
51b9e7c604 science/mcstas-comps: Update to 2.5 and unbreak
While I'm here:

* Add post-install target to strip binary files and create symbolic links to
  ${PREFIX}/bin (derived from related port science/mcstas to keep in sync)
* Add shebang fix for sasview_generator.py

Changelog that lists the changes since 2.2a:

http://www.mcstas.org/download/CHANGES_McStas

PR:		234590
Submitted by:	Erik B. Knudsen (maintainer)
Reviewed by:	tcberner (mentor)
Approved by:	miwi (mentor)
Differential Revision:	https://reviews.freebsd.org/D19228
2019-02-20 22:34:23 +00:00
Sunpoet Po-Chuan Hsieh
57c522cc78 Update to 2.3.2
Changes:	https://github.com/spacetelescope/asdf/releases
2019-02-20 20:47:15 +00:00
Sunpoet Po-Chuan Hsieh
431504ed34 Update to 2.12.0
Changes:	https://confluence.ecmwf.int/display/ECC/Latest+news
2019-02-19 19:46:50 +00:00
Yuri Victorovich
345f9c13ae New port: science/dvc: Git for data scientists: manage code and data together 2019-02-18 19:37:36 +00:00
Sunpoet Po-Chuan Hsieh
e0980719fa Update to 1.37
Changes:	https://metacpan.org/changes/distribution/Geo-BUFR
2019-02-17 19:39:21 +00:00
Sunpoet Po-Chuan Hsieh
4f11b7b94c Update WWW 2019-02-17 19:38:55 +00:00
Yuri Victorovich
a5c263821d science/pcmsolver: Update 1.2.2 -> 1.2.3
Reported by:	portscout
2019-02-17 02:36:15 +00:00
Yuri Victorovich
62e907ce65 science/gromacs: Update 2019 -> 2019.1
Reported by:	portscout
2019-02-17 02:32:07 +00:00
Yuri Victorovich
f0650275da science/libgridxc: Update 0.8.4 -> 0.8.5
Reported by:	portscout
2019-02-17 02:24:01 +00:00
Sunpoet Po-Chuan Hsieh
16fbd49852 Update to 1.5.0
Changes:	https://github.com/Try2Code/cdo-bindings/blob/master/README.md#changelog
2019-02-16 22:54:45 +00:00
Yuri Victorovich
898ee05233 science/openstructure: python:2.7 for now
PR:		234781
Reported by:	antoine
2019-02-16 19:05:32 +00:00
Antoine Brodin
0605a3fd69 Remove bogus dependency, erkale links against libomp from llvm 2019-02-16 13:19:29 +00:00
Antoine Brodin
d7ca0da459 Remove bogus dependency, agrum links against libomp from llvm port 2019-02-16 13:18:10 +00:00
Antoine Brodin
252263159d Unbreak INDEX 2019-02-16 10:32:12 +00:00
Yuri Victorovich
05e6ea93c0 Move: science/mmtf -> science/mmtf-cpp
Also update its COMMENT to be more descriptive
2019-02-16 08:02:02 +00:00
Yuri Victorovich
0e185babc2 science/agrum: Fix warning messages of 'make describe'
PR:		235729
Submitted by:	Yasuhiro KIMURA <yasu@utahime.org>
2019-02-14 03:45:07 +00:00
Yuri Victorovich
88cd303725 New port: science/opsin: Open Parser for Systematic IUPAC Nomenclature of chemical names 2019-02-14 00:54:56 +00:00
Wen Heping
d932ac76f6 - Update to 1.2.2 2019-02-13 23:49:54 +00:00
Yuri Victorovich
8add977886 science/jmol: Add the executable jmoldata for headless operation 2019-02-13 10:21:20 +00:00
Yuri Victorovich
6c88f0d2f7 Re-add: science/jmol: Java 3D viewer for chemical structures 2019-02-13 09:51:05 +00:00
Yuri Victorovich
2900541294 New port: science/molscript: Display 3D molecules in schematic and detailed representations 2019-02-13 07:00:58 +00:00
Sunpoet Po-Chuan Hsieh
eabe4c3755 Update to 1.0.4
- Remove DISTVERSIONPREFIX

Changes:	https://gitlab.dkrz.de/k202009/libaec/blob/master/CHANGELOG.md
2019-02-12 21:03:10 +00:00
Yuri Victorovich
cf2f1998fe science/py-pymol: Update 2.2.0 -> 2.3.0
Reported by:	portscout
2019-02-12 06:52:57 +00:00
Yuri Victorovich
4444ab4a8e science/mmtf: Update g20180730 -> 1.0.0
Bump science/avogadrolibs since it uses this headers-only library.
2019-02-12 06:18:05 +00:00
Yuri Victorovich
f4db8ca33c science/gabedit: Update 2.5.0 -> 2.5.1
Reported by:	repology (Fedora has 2.5.1 dev version)
2019-02-10 18:42:25 +00:00
Yuri Victorovich
da856e6fcb science/healpix: fix build with GCC-based architectures
PR:		235643
Submitted by:	Piotr Kubaj <pkubaj@anongoth.pl>
2019-02-10 17:09:19 +00:00
Yuri Victorovich
ba23be18cd science/spglib: 1.11.2.1 -> 1.12.2
Reported by:	repology
2019-02-10 01:33:34 +00:00
Yuri Victorovich
c443b8bf36 science/agrum: Update 0.13.6 -> 0.14.1
Reported by:	repology
2019-02-10 01:16:08 +00:00
Yuri Victorovich
d813c18453 science/abinit: Update 8.8.4 -> 8.10.2 2019-02-10 00:30:17 +00:00
Sunpoet Po-Chuan Hsieh
cb8f26a88d Update to 1.9.6
- Add ECCODES option

Changes:	https://code.mpimet.mpg.de/news/436
2019-02-09 23:27:28 +00:00
Yuri Victorovich
029d56f78c New port: science/py-oddt: Open Drug Discovery Toolkit 2019-02-09 22:51:25 +00:00
Tobias C. Berner
e349bbbca3 Update KDE Applications to 18.12.2
[1] https://www.kde.org/announcements/announce-applications-18.12.2.php
[2] https://www.kde.org/announcements/fulllog_applications-aether.php?version=18.12.2
2019-02-08 05:11:13 +00:00
Fernando Apesteguía
565b75c946 science/paraview: update to 5.6.0
* Delete a bunch of patches not needed anymore
* Complete USES with gl

No info for this release.

PR:	234896
Submitted by:	devel@stasyan.com (maintainer)
2019-02-07 16:58:51 +00:00
Sunpoet Po-Chuan Hsieh
620157e197 Update WWW 2019-02-05 13:52:01 +00:00
Sunpoet Po-Chuan Hsieh
df58d53a14 Update PORTSCOUT 2019-02-05 13:48:30 +00:00
Sunpoet Po-Chuan Hsieh
b2002314e8 Update to 1.9.0
- Update MASTER_SITES
- Update WWW

1.9.0:
- gribZip: remove large file support
- store Decimal scale factor to int16 (bug fix)
- bug fix for large grib records
- Added CALENDAR_GREGORIAN

1.8.1:
- Skip GridDataSection if not available
- Changed boolean ints to stdbool
- file_fill_buffer: set offset (bug fix) [patch from Harald Anlauf]

1.8.0:
- Fix unreliable rounding

1.7.6:
- Added support for GRIB level type 210
- gribReadSize/gribGetSize: changed type of  return value to size_t
- Removed libaec specific calls
2019-02-05 13:48:25 +00:00
Sunpoet Po-Chuan Hsieh
ba8a8ecb49 Update PORTSCOUT 2019-02-05 13:48:20 +00:00
Antoine Brodin
f60d9f9d66 py-abipy is not compatible with python2 2019-02-04 21:07:51 +00:00
Yuri Victorovich
5e60eaff7c science/py-pymatgen: python-3 only 2019-02-04 19:53:14 +00:00
Yuri Victorovich
25bf8ec553 science/py-pymatgen: Update 2018.10.18 -> 2019.1.24
portscout has missed this update.
2019-02-04 19:26:51 +00:00
Ben Woods
c099f5be4a science/gramps: Update to 5.0.1
Changes this release:
  https://gramps-project.org/introduction-WP/2018/07/gramps-5-0-0-released/
  https://gramps-project.org/introduction-WP/2018/12/gramps-5-0-1-released/
2019-02-04 14:14:38 +00:00
Antoine Brodin
72f4491c41 Deprecate ports broken for more than 6 months 2019-02-03 20:46:35 +00:00
David Chisnall
3f627ab4ce Move Objective-C ports to the v2 GNUstep ABI.
* Bump the LLVM revision used for GNUstep to 7, the minimum to support
   the new ABI.
 * GNUstep-back does not work with lld, so mark it to use Gold (BFD LD
   doesn't seem able to link Objective-C things).
 * Turn off some annoying debug logs in GNUstep back, which generate
   several messages per second when you move the mouse.  These should
   never have been enabled in a release build anyway.
 * Downgrade Cenon to 4.0.2.  This was the last version to actually work
   with GNUstep (the later ones use XCode >= 5 .xib files, which GNUstep
   can't parse).
 * Update gorm to git head. The current release doesn't work with the
   new Objective-C ABI, but -head has the patches to fix it.
 * Update PikoPixel and add it to the gnustep-app meta-package.
 * Update the three core GNUstep packages to the latest release.
 * Update gnumail and pantomime to the latest release and fix a linking
   error with the new ABI.
 * Update GNUstep FTP to the latest version.

Reviewed by:	bapt (previous version)
2019-02-03 15:37:58 +00:00
Tobias Kortkamp
0ce3311721 science/ALPSCore: Mark broken on i386
alea/src/autocorr.cpp:269:7: error: no matching member function for call to 'read'
    s.read("@size", ndview<size_t>(nullptr, &new_size, 0)); // discard
    ~~^~~~

http://beefy1.nyi.freebsd.org/data/112i386-quarterly/491666/logs/errors/ALPSCore-2.2.0_5.log
http://beefy5.nyi.freebsd.org/data/120i386-default/491665/logs/errors/ALPSCore-2.2.0_6.log

- Reset MAINTAINER

PR:		232993
Submitted by:	Michael Danilov <mike.d.ft402@gmail.com> (maintainer)
2019-02-02 17:53:04 +00:00
Yuri Victorovich
71977f2651 science/pcmsolver: Update 1.2.1 -> 1.2.2
Reported by:	portscout
2019-01-31 04:57:30 +00:00
Yuri Victorovich
f8c9f79e5e science/py-spglib: Update 1.11.1 -> 1.12.0
Reported by:	portscout
2019-01-31 04:47:08 +00:00
Yuri Victorovich
5208f41bde New port: science/healpix: Software for pixelization, visualization, etc of data on the sphere
Approved by:	portmgr
Differential Revision:	D18548
2019-01-28 09:33:12 +00:00
Yuri Victorovich
e6fb77ce12 New port: science/nwchem-data: Data for NWChem, the computational chemistry software
Split out data from science/nwchem to facilitate flavor creation there.
2019-01-26 22:00:10 +00:00
Yuri Victorovich
6de3d6383a science/nwchem: Update 6.8.1.20181107 -> 6.8.1.20190125 2019-01-26 20:59:45 +00:00
Yuri Victorovich
a31cd20709 science/datawarrior: Update 4.7.2 -> 5.0.0
Reported by:	repology
2019-01-26 08:01:20 +00:00
Yuri Victorovich
e04f7171a8 science/py-pymatgen: Update 2018.9.30 -> 2018.10.18
Reported by:	repology
2019-01-26 06:27:42 +00:00
Yuri Victorovich
d75d088d54 science/py-gpaw: Update 1.5.0 -> 1.5.1
Reported by:	portscout
2019-01-26 05:31:44 +00:00
Yuri Victorovich
f96277716c science/cp2k: Remove contiguous blank lines 2019-01-26 05:23:51 +00:00
Yuri Victorovich
7a4ad01d7a science/cp2k: Add missing executables that should be installed 2019-01-26 05:20:14 +00:00
Mark Linimon
9d8de19218 Conditionalize the dependence of libunwind to x86-only to allow building
these ports on !x86.

libunwind is only available for x86; lang/ruby* already expresses this
correctly.  Some of the rubygems did not: for the ones that already had
USE_RUBY, the dependency was overspecified in the first place.

Tested for no-harm on amd64.

While here, pet portlint where appropriate.

Approved by:	portmgr (tier-2 blanket)
2019-01-24 05:09:48 +00:00
Mathieu Arnold
08c11c4978 Sort categories Makefiles. 2019-01-22 16:26:49 +00:00
Guido Falsi
41ff4e536e Clenup xfce ports:
- Add missing dependencies
- Remove unneeded patches
- Regenerate and rename legacy patches
- Add NLS option to ports providing such a knob, and missing the
  option
- Add INSTALL_TARGET=install-strip where missing
- Sort things
- Remove unneeded +=
- Cosmetic changes to OPTION related variables to improve readability
- Update WWW
- Silence portlint warnings about variables order
- Bump PORTREVISION where changing dependencies and/or adding
  install-strip
2019-01-22 14:44:38 +00:00
Yuri Victorovich
83536c685a science/agrum: Update 0.13.4 -> 0.13.6
Reported by:	repology
2019-01-22 03:06:25 +00:00
Yuri Victorovich
ed75b0b4f0 science/gromacs: Update 2018.4 -> 2019
Reported by:	repology
2019-01-22 02:02:15 +00:00
Yuri Victorovich
546c380f50 science/spglib: Update 1.11.2 -> 1.11.2.1
Reported by:	portscout
2019-01-21 09:26:33 +00:00
Yuri Victorovich
aa9ea3249e science/octopus: patches 2019-01-20 01:22:46 +00:00
Yuri Victorovich
37c3652c36 science/octopus: Unbundle spglib; Add OPENMP option that makes it parallelized by default 2019-01-20 01:04:39 +00:00
Tobias C. Berner
82cde37c81 science/mcstas-comps: fix RUN_DEPENDS
Approved by:	portmgr blanket
2019-01-19 09:48:16 +00:00
Antoine Brodin
b5b2da5598 Mark BROKEN: missing RUN_DEPENDS
===>   mcstas-comps-2.2a depends on file: /usr/local/mcstas/2.2a/bin/mcstas - not found

Reported by:	pkg-fallout
2019-01-19 07:17:55 +00:00
Yuri Victorovich
9fe291bb3c science/erkale: Update 0c285c1 -> 4bd3930 2019-01-18 16:25:43 +00:00
Yuri Victorovich
249fd7f792 science/py-rmsd: Fix CATEGORIES 2019-01-18 02:07:03 +00:00
Yuri Victorovich
6cee334b36 New port: science/py-rmsd: Calculate root-mean-square deviation (RMSD) between coordinate sets 2019-01-18 02:03:39 +00:00
Sunpoet Po-Chuan Hsieh
5542508c35 Add py-asdf 2.3.1
The Advanced Scientific Data Format (ASDF) is a next-generation interchange
format for scientific data. This package contains the Python implementation of
the ASDF Standard.

The ASDF format has the following features:
- A hierarchical, human-readable metadata format (implemented using YAML)
- Numerical arrays are stored as binary data blocks which can be memory mapped.
  Data blocks can optionally be compressed.
- The structure of the data can be automatically validated using schemas
  (implemented using JSON Schema)
- Native Python data types (numerical types, strings, dicts, lists) are
  serialized automatically
- ASDF can be extended to serialize custom data types

WWW: https://github.com/spacetelescope/asdf
2019-01-17 19:21:25 +00:00
Yuri Victorovich
f61a4ea522 New port: science/erkale-pseudopotentials: Pseudopotentials for Erkale, the quantum chemistry program 2019-01-17 09:42:53 +00:00
Yuri Victorovich
26eefa7fb5 science/erkale: Update 0927d8c -> 0c285c1
Port changes:
* Add the standard location for erkale's pseudopotentials.
* Add pkg-message suggesting to install erkale-pseudopotentials
2019-01-17 09:40:24 +00:00
Yuri Victorovich
7463d93b02 science/py-OpenFermion: Update 0.8 -> 0.9.0
Reported by:	portscout
2019-01-17 06:31:46 +00:00
Yuri Victorovich
a750ea6346 science/lm: Do not set VMD_VARS twice
PR:		234747
Reported by:	tobik
2019-01-17 06:24:51 +00:00
Yuri Victorovich
b3c58e4521 science/coot: Remove the unused CONFIGURE_ARGS line
PR:		234737
Reported by:	tobik
2019-01-17 05:59:38 +00:00
Yuri Victorovich
f0427f8df6 science/vipster: Update 1.14a -> 1.14.1a
This should fix build failures due to wrong STL headers.
2019-01-16 18:22:23 +00:00
Tijl Coosemans
1bf487d3e7 Fix Qt5 symbol version scripts to put the catch-all clause first. When
a symbol matches multiple clauses the last one takes precedence.  If the
catch-all is last it captures everything.  In the case of Qt5 libraries
this caused all symbols to have a Qt_5 label while some should have
Qt_5_PRIVATE_API.  This only affects lld because GNU ld always gives the
catch-all lowest priority.

Older versions of Qt5Webengine exported some memory allocation symbols from
the bundled Chromium.  Version 5.9 stopped exporting these [1] but the
symbols were kept as weak wrappers for the standard allocation functions to
maintain binary compatibility. [2][3]  The problem is that the call to the
standard function in these weak wrappers is only resolved to the standard
function if there's a call to this standard function in other parts of
Qt5Webengine, because only then is there a non-weak symbol that takes
precedence over the weak one.  If there's no such non-weak symbol the call
in the weak wrapper resolves to the weak wrapper itself creating an infinite
call loop that overflows the stack and causes a crash.  Some of the
allocation functions are variants of C++ new and delete and it probably
depends on the compiler whether these variants are used in other parts of
Qt5Webengine.

Remove the weak wrappers (make them Linux specific).  This isn't binary
compatible but we are already breaking that with the changes to the symbol
versions.

[1] 5c2cbfccf9
[2] 2ed5054e3a
[3] 009f5ebb4b

Bump all ports that depend on Qt5.

PR:		234070
Exp-run by:	antoine
Approved by:	kde (adridg)
2019-01-16 11:13:44 +00:00
Yuri Victorovich
98b078ed4d science/tinker: Update 8.4.4 -> 8.5.3
Reported by:	portscout
2019-01-16 04:36:12 +00:00
Yuri Victorovich
1b54784efc science/py-gpaw: Update 1.4.0 -> 1.5.0
Reported by:	portscout
2019-01-15 18:29:45 +00:00
Yuri Victorovich
d9430feacb science/bagel: Update 1.2.1 -> 1.2.2 2019-01-15 18:27:47 +00:00
Jose Alonso Cardenas Marquez
49e853cd3d - Add LLD_UNSAFE
PR:		214864
2019-01-15 05:44:58 +00:00
Jose Alonso Cardenas Marquez
846470de89 - Add LLD_UNSAFE
PR:		214864
2019-01-15 05:43:59 +00:00
Tobias Kortkamp
2e3378cde0 Cleanup RLN usage
RLN is based on install(1) and -s means "run strip(1) on the installed
binary".  install(1) ignores -s when it makes a link, so it "works"
now instead of failing when it links non-binaries.
2019-01-14 14:05:39 +00:00
Steve Wills
0dfb1596dd science/mcstas: update to 2.5
While here, update LICENSE, clean up, pet portlint

PR:		234589
Submitted by:	Erik B Knudsen <erkn@fysik.dtu.dk> (maintainer)
2019-01-14 13:02:57 +00:00
Wen Heping
eb55bf7954 - Update to 0.9.3
- Take maintainership
2019-01-14 03:26:29 +00:00
Sunpoet Po-Chuan Hsieh
8634eafdb9 Remove outdated document
- Bump PORTREVISION for package change
2019-01-13 20:25:41 +00:00
Sunpoet Po-Chuan Hsieh
988707b887 Update to 4.4.5
Changes:	https://github.com/Unidata/netcdf-fortran/releases
2019-01-13 20:08:15 +00:00
Sunpoet Po-Chuan Hsieh
dd30bd4544 Change MASTER_SITES 2019-01-13 20:08:10 +00:00
Sunpoet Po-Chuan Hsieh
f983c40255 Update to 4.6.2
Changes:	https://github.com/Unidata/netcdf-c/releases
		https://github.com/Unidata/netcdf-c/blob/master/RELEASE_NOTES.md
2019-01-13 20:08:05 +00:00
Ruslan Makhmatkhanov
555634eec2 science/py-lifelines: update to 0.17.0 2019-01-13 18:19:07 +00:00
Mark Linimon
901513498c USES=compiler:c++11-lang is necessary to build this port on GCC-based
architectures.

PR:		234373
Submitted by:	Piotr Kubaj
Approved by:	maintainer
2019-01-13 02:18:22 +00:00
Mark Linimon
0fc750a4ce This port requires USES=compiler:c++11-lang to build on GCC-based
architectures.

PR:		234355
Submitted by:	Piotr Kubaj
Approved by:	maintainer
2019-01-12 23:32:09 +00:00
Tobias C. Berner
7ee9c5458d Update KDE Applications to 18.12.1
Release Announcement:
	https://www.kde.org/announcements/announce-applications-18.12.1.php

Today KDE released the first stability update for KDE Applications 18.12.
This release contains only bugfixes and translation updates, providing a
safe and pleasant update for everyone.

About 20 recorded bugfixes include improvements to Kontact, Cantor, Dolphin,
JuK, Kdenlive, Konsole, Okular, among others.

Improvements include:
  *  Akregator now works with WebEngine from Qt 5.11 or newer
  *  Sorting columns in the JuK music player has been fixed
  *  Konsole renders box-drawing characters correctly again

You can find the full list of changes here:
	https://www.kde.org/announcements/fulllog_applications-aether.php?version=18.12.1
2019-01-10 19:52:57 +00:00
Yuri Victorovich
73e341e267 science/agrum: Simplify PLIST_SUB
Reported by:	mat
2019-01-09 19:42:50 +00:00