Commit graph

1791 commits

Author SHA1 Message Date
Ashish SHUKLA
0c76a8384f - Please welcome GHC 7.0.3
GHC in the ports tree has been updated to 7.0.3 and all other Haskell ports
are also updated to their corresponding Haskell Platform versions, or latest
versions.

We would like to acknowledge the support of the FreeBSD Donations Team and
Eotvos Lorand University, Faculty of Informatics who contributed to the server
that we used for testing.

We would also like to thank all the testers who tested FreeBSD Haskell ports
and provided their feedback.

PR:		ports/156642
Approved by:	tabthorpe (mentor)
Obtained from:	FreeBSD Haskell
2011-05-09 05:28:57 +00:00
Brendan Fabeny
f08fd58316 - update to 2.13.0
- switch to the bundled Rblas and Rlapack by default (this
  can be changed by setting BLAS and LAPACK) which favors
  correctness in some corner cases over a slight performance
  penalty; this will be revisited after the blas and lapack
  updates
- replace the STATIC_LIBR option with a LIBR option (on
  by default): if on, libR.a and libR.so are installed,
  and R is linked to libR.so. Otherwise, R is static, and
  no libRs are installed.
- remove the superfluous copy of libR.so in ${LOCALBASE}/lib [1]
- enable the cairo and pango elements in the X11() graphics
  device by default, controlled by new PANGOCAIRO option
- add a few small patches to dependent ports, bumping
  PORTREVISION where necessary

PR:		153309 [1]
Approved by:	thierry (rkward*), wen (rpy*, R-cran-*)
2011-05-07 03:29:59 +00:00
Baptiste Daroussin
0b10dff092 Another bunch of expired ports removal
2011-05-01 audio/albumart: Upstream disapear and distfile is no more available
2011-05-01 audio/aylet: Upstream disapear and distfile is no more available
2011-05-01 audio/cantus: Upstream disapear and distfile is no more available
2011-05-01 audio/xaylet: Upstream disapear and distfile is no more available
2011-05-01 science/oases: Upstream disapear and distfile is no more available
2011-05-01 shells/pash: Upstream disapear and distfile is no more available
2011-05-03 13:05:08 +00:00
Max Brazhnikov
630ca2285f Bump PORTREVISION after open-mofit update 2011-05-02 12:44:53 +00:00
Rong-En Fan
77d3e20e0a - Update to 1.8
- Add LICENSE
2011-05-02 12:19:32 +00:00
Rong-En Fan
b8b99764ac - Update to 3.1 [1]
- Change target of symlink libsvm.so from absolute path to relative path so
  that it behaves like what other people doing [2]
- Add LICENSE

PR:		ports/156599 [1]
Submitted by:	dikshie <dikshie at sfc.wide.ad.jp> [1]
Submitted by:	jsa@ [2]
2011-04-24 04:30:35 +00:00
Rene Ladan
48f1d8c469 Remove most expired ports:
2011-04-17 cad/tclspice: has been broken for more than a year
2011-04-17 comms/hcfmdm: does not compile on 7.X or higher
2011-04-17 databases/mysqlcc: has been broken for almost a year
2011-04-17 devel/ruby-rjudy: does not compile on FreeBSD 7.x or newer
2011-04-17 devel/xfc: does not compile on FreeBSD 7.x or newer
2011-04-17 devel/lamson: has been broken for a half year
2011-04-17 devel/cocktail: does not build on FreeBSD 7.x or newer
2011-04-17 devel/djgpp-gcc: has been broken for half a year
2011-04-17 devel/gauche-sdl: has been broken for a year
2011-04-17 devel/gdb53-act: does not compile on FreeBSD 7.x and up
2011-04-17 editors/zed: does not compile on FreeBSD 7.x or newer
2011-04-17 games/aqbubble: does not compile on FreeBSD 7.x or newer
2011-04-17 graphics/libvisual-plugins: has been broken for 3 years
2011-04-17 japanese/roundcube: has been broken for almost a year
2011-04-17 japanese/tkstep80: does not compile on FreeBSD 7.x or newer
2011-04-17 lang/u++: has been broken for over a half year
2011-04-17 lang/pugs: has been broken for over a year
2011-04-17 lang/mozart: does not compile on FreeBSD 7.x or newer
2011-04-17 math/linalg: does not build on FreeBSD 7.x or newer
2011-04-17 math/R-cran-igraph: has been broken for over a half year
2011-04-17 misc/ftree: has been broken for over a half year
2011-04-17 multimedia/katchtv: has been broken for a half year
2011-04-17 multimedia/libomxil-bellagio: has been broken for almost a year
2011-04-17 multimedia/banshee-mirage: has been broken for over a half year
2011-04-17 net-p2p/trackerbt: has been broken for a half year
2011-04-17 net/cap: does not compile on FreeBSD 7.x or newer
2011-04-17 net/ggsd: does not compile on FreeBSD 7.x or newer
2011-04-17 net/b2bua: does not compile on FreeBSD 7.x or newer
2011-04-17 net/penguintv: has been broken for a half year
2011-04-17 news/openftd: has been broken for almost a year
2011-04-17 palm/romeo: does not compile on FreeBSD 7.x or newer
2011-04-17 science/pcp: does not compile on FreeBSD 7.x or newer
2011-04-17 science/elmer-fem: has been broken for over a year
2011-04-17 security/newpki-lib: does not compile on FreeBSD 7.x or newer
2011-04-17 security/newpki-server: does not compile on FreeBSD 7.x or newer
2011-04-17 security/xmlsec: does not compile on FreeBSD 7.x or newer
2011-04-17 security/f-protd: has been broken for over a year
2011-04-17 sysutils/xwlans: does not compile on FreeBSD 7.x or newer
2011-04-17 www/bk_edit: does not compile on FreeBSD 7.x and newer
2011-04-17 www/bricolage: has been broken for a half year
2011-04-17 x11-toolkits/gauche-gtk: has been broken for a year
2011-04-17 x11-toolkits/gambas2-gb-qt: has been broken for over a year
2011-04-17 x11-toolkits/php-gtk2: has been broken for over a half year
2011-04-17 x11-toolkits/p5-Tcl-Tk: has been broken for 2 year
2011-04-17 x11/metisse: has been broken for over a half year
2011-04-18 22:25:41 +00:00
Thierry Thomas
ed5c2b22d5 Add a missing dependency on numpy.
Reported by:	pointyhat via Pav
2011-04-13 16:29:05 +00:00
Sunpoet Po-Chuan Hsieh
4aa3734e96 - Update to 2.1.22
- CPPFLAGS is now added to CONFIGURE_ENV by Mk/bsd.port.Mk

Changes:	http://www.unidata.ucar.edu/blogs/news/entry/udunits_version_2_1_22
2011-04-12 15:18:34 +00:00
Sunpoet Po-Chuan Hsieh
4220347afa - Bump PORTREVISION for science/netcdf4 shlib change 2011-04-12 15:17:34 +00:00
Sunpoet Po-Chuan Hsieh
9eb8f07c0f - Update to 4.1.2
- Add OPTIONS: DAP
- Use bsd.port.options.mk
- Use USE_GNOME=gnomehack
- Use = instead of += on LIB_DEPENDS and MAKE_ENV
- CPPFLAGS is now added to CONFIGURE_ENV by Mk/bsd.port.Mk

Changes:	http://www.unidata.ucar.edu/software/netcdf/release-notes-4.1.2.html
2011-04-12 15:17:17 +00:00
Sunpoet Po-Chuan Hsieh
b5fae95209 - Use bsd.port.options.mk
- CPPFLAGS is now added to CONFIGURE_ENV by Mk/bsd.port.Mk
- Remove obsolete MD5 checksum
2011-04-12 15:17:09 +00:00
Sunpoet Po-Chuan Hsieh
042f7a485d - Update to 1.5.0
- Update netcdf4 dependency
- CPPFLAGS is now added to CONFIGURE_ENV by Mk/bsd.port.Mk
- Remove OSVERSION check
- Space/Tab twiddle

Changes:	https://code.zmaw.de/news/50
2011-04-12 15:17:01 +00:00
Max Brazhnikov
132402b354 CMAKE_BUILD_TYPE is set in bsd.cmake.mk now, remove it from Makefiles 2011-04-10 08:48:14 +00:00
Max Brazhnikov
7271a42704 - Update to 3.10.0 [1]
- Remove support for 6.x and add workaround for CMAKE_BUILD_TYPE
  while here I'm here

PR:		ports/156223 [1]
Submitted by:	Stas Timokhin (maintainer)
2011-04-09 16:01:01 +00:00
Florian Smeets
ea3dbd7b34 - update to 4.5.4
PR:		ports/156214
Submitted by:	"Peter C. Lai" <cowbert@gmail.com>
2011-04-09 13:25:13 +00:00
Max Brazhnikov
9258c3ba11 - Kst is broken with undefined CMAKE_BUILD_TYPE. Set CMAKE_BUILD_TYPE to
Release, until a proper fix will be committed to bsd.cmake.mk
- Enable MAKE_JOBS_SAFE again

Reported by:	pointyhat
2011-04-08 19:26:19 +00:00
Dirk Meyer
bbdff0a2e6 - drop MD5 2011-04-07 18:26:01 +00:00
Thierry Thomas
832382b2bd Fix an undefined symbol "GOMP_parallel_start" in
science/py-gnudatalanguage.
2011-04-06 22:01:14 +00:00
Thierry Thomas
c58bd6e866 Upgrade to 0.9.1. 2011-04-06 20:42:26 +00:00
Max Brazhnikov
b3343c6d33 Unset MAKE_JOBS_SAFE to figure out why the port fails on pointyhat 2011-04-03 20:39:59 +00:00
Brendan Fabeny
098a7e2783 update to 2.0wr-011109 and adopt 2011-03-31 16:20:14 +00:00
Brendan Fabeny
1e56df8489 update to 3.0wr-011109 and adopt 2011-03-31 16:03:03 +00:00
Frederic Culot
6e18bae961 - Update to 2.4.3
- LICENSE added

PR:		ports/156059
Submitted by:	Gvozdikov Veniamin <g.veniamin AT googlemail.com> (maintainer)
2011-03-31 06:51:37 +00:00
Max Brazhnikov
ab46a116a0 Update to 2.0.3 2011-03-30 21:20:14 +00:00
Beat Gaetzi
9e6d7535e3 - Update to 0.99.21
- Remove MD5 checksum
- Reset maintainership
2011-03-27 17:13:49 +00:00
Koop Mast
0f36c5a9ac Update to 0.12.7.
Chase goffice and gnumeric update.
2011-03-25 12:32:48 +00:00
Martin Wilke
c72b94c30a AI4R is a collection of ruby algorithms implementations,
covering several Artificial intelligence fields.  It implements:

 * Genetic algorithms
 * Self-organized maps (SOM)
 * Neural Networks
    - Multilayer perceptron with Backpropagation learning
    - Hopfield net
 * Automatic classifiers (Machine Learning)
    - ID3 (Decision Trees)
    - PRISM (J. Cendrowska, 1987)
    - Multilayer Perceptron
    - OneR (AKA One Attribute Rule, 1R)
    - ZeroR
    - Hyperpipes
    - Naive Bayes
    - IB1 (D. Aha, D. Kibler - 1991)
 * Data clustering
    - K-means
    - Bisecting k-means
    - Single linkage
    - Complete linkage
    - Average linkage
    - Weighted Average linkage
    - Centroid linkage
    - Median linkage
    - Ward's method linkage
    - Diana (Divisive Analysis)

WWW: http://ai4r.rubyforge.org/

PR:		ports/155699
Submitted by:	Eric Freeman <freebsdports at chillibear.com>
2011-03-25 12:08:20 +00:00
Wen Heping
bb12e102f3 The obspy.wav package contains methods in order to read and write
seismogram files in the WAV(audio) format. The data are squeezed to
audible frequencies.

ObsPy is an open-source project dedicated to provide a Python framework
for processing seismological data. It provides parsers for common
file formats and seismological signal processing routines which allow
the manipulation of seismological time series (see Beyreuther et. al.
2010). The goal of the ObsPy project is to facilitate rapid application
development for seismology.

WWW: http://www.obspy.org/
2011-03-21 06:28:57 +00:00
Steve Wills
cae009169c h5utils is a set of utilities for visualization and conversion of
scientific data in the free, portable HDF5 format.

Besides providing a simple tool for batch visualization as PNG images,
h5utils also includes programs to convert HDF5 datasets into the formats
required by other free visualization software (e.g. plain text, Vis5d,
and VTK).

WWW: http://ab-initio.mit.edu/wiki/index.php/H5utils

PR:		ports/155482
Submitted by:	Klaus Aehlig <aehlig at linta.de>
2011-03-18 19:42:35 +00:00
Martin Wilke
cceb7cc4cc - Fix Coredump
PR:		155654
Submitted by:	TAOKA Fumiyoshi <fmysh@iijmio-mail.jp>
2011-03-18 09:59:55 +00:00
Max Brazhnikov
ae0b116944 Update to 2.7
PR:		ports/155584
Submitted by:	Rob Farmer (maintainer)
2011-03-17 17:24:59 +00:00
Pav Lucistnik
e13f00eca1 - Mark ports that have been broken for six month or more, or never compiled on
7.X and up, for removal in one month
2011-03-17 11:08:44 +00:00
Wen Heping
f56fbc67a7 - Remove py-obspy.core because the default cvsupd configuration (cvsignore to be exact) prevents the download of files named *.core, use py-obspy-core instead
Thanks to:	dougb@, cperciva@, demelier.david@gmail.com
2011-03-16 09:56:38 +00:00
Wen Heping
9743ef8e08 - Update DEPENDS 2011-03-16 08:51:00 +00:00
Wen Heping
3eabb018e9 The obspy.core package contains common methods and classes
for ObsPy. It includes UTCDateTime, Stats, Stream and Trace
classes and methods for reading seismograms.

ObsPy is an open-source project dedicated to provide a Python
framework for processing seismological data. It provides
parsers for common file formats and seismological signal
processing routines which allow the manipulation of
seismological time series (see Beyreuther et. al. 2010).
The goal of the ObsPy project is to facilitate rapid application
development for seismology.

WWW: http://www.obspy.org/
2011-03-16 08:46:36 +00:00
Wen Heping
ac49b69bf5 The obspy.signal package contains signal processing routines
for seismology. Capabilities include filtering, triggering,
rotation, instrument correction and coordinate transformations.

ObsPy is an open-source project dedicated to provide a Python
framework for processing seismological data. It provides parsers
for common file formats and seismological signal processing
routines which allow the manipulation of seismological time
series (see Beyreuther et. al. 2010). The goal of the ObsPy
project is to facilitate rapid application development for seismology.

WWW: http://www.obspy.org/
2011-03-14 14:09:29 +00:00
Wen Heping
53ab78064b This module contains Python wrappers for gse_functions - The GSE2 library
of Stefan Stange (http://www.orfeus-eu.org/Software/softwarelib.html#gse).
Currently CM6 compressed GSE2 files are supported, this should be sufficient
for most cases. Gse_functions are written in C and interfaced via Python
ctypes.

WWW: http://www.obspy.org/
2011-03-14 14:05:40 +00:00
Wen Heping
beaa8282a4 This module contains Python wrappers for libmseed - The MiniSeed
library of Chad Trabant. Libmseed is written in C and interfaced
via Python ctypes.

WWW: http://www.obspy.org/
2011-03-14 13:08:04 +00:00
Wen Heping
a84b4427a2 The obspy.core package contains common methods and classes
for ObsPy. It includes UTCDateTime, Stats, Stream and Trace
classes and methods for reading seismograms.

ObsPy is an open-source project dedicated to provide a Python
framework for processing seismological data. It provides
parsers for common file formats and seismological signal
processing routines which allow the manipulation of
seismological time series (see Beyreuther et. al. 2010).
The goal of the ObsPy project is to facilitate rapid application
development for seismology.

WWW: http://www.obspy.org/
2011-03-14 13:04:03 +00:00
Baptiste Daroussin
3138dba871 Deprecate unmaintained ports from science where upstream disapear and/or
where no distfiles can be found and are not used by maintained ports
2011-03-13 21:47:45 +00:00
Frederic Culot
b1ec4c1c2d - Update to 1.8.6
Changes:	http://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
PR:		ports/155458
Submitted by:	Rob Farmer <rfarmer AT predatorlabs.net>
Approved by:	Quincey Koziol <koziol AT hdfgroup.org> (maintainer)
2011-03-12 10:07:53 +00:00
Mark Linimon
0db2bdb300 Apparently builds on amd64, but not i386 (an unusual case).
Noticed by:	"Klaus T. Aehlig" <aehlig at linta dot de>
2011-03-11 21:27:31 +00:00
Max Brazhnikov
e434d7522e Update to 1.3.0 2011-03-10 17:01:09 +00:00
Wen Heping
ca7b73fa17 BUFR = Binary Universal Form for the Representation of meteorological data.
BUFR is approved by WMO (World Meteorological Organization) as the standard
universal exchange format for meteorological observations, gradually
replacing a lot of older alphanumeric data formats.

This module provides methods for decoding and encoding BUFR messages, and
for displaying information in BUFR B and D tables and in BUFR flag and code
tables.

Installing this module also installs some programs: bufrread.pl,
bufrresolve.pl, bufrencode.pl, bufr_reencode.pl and bufralter.pl. See
https://wiki.met.no/bufr.pm/start for examples of use. For the majority of
potential users of Geo::BUFR I would expect these programs to be all that
you will need Geo::BUFR for.

WWW: http://search.cpan.org/dist/Geo-BUFR/
2011-03-10 06:15:55 +00:00
Thierry Thomas
ccfa57122e Upgrade to 2011.03.06. 2011-03-07 20:59:00 +00:00
Wen Heping
267e104201 bayesm covers many important models used in marketing and micro-econometrics
applications. The package includes: Bayes Regression (univariate or
multivariate dep var), Bayes Seemingly Unrelated Regression (SUR), Binary and
Ordinal Probit, Multinomial Logit (MNL) and Multinomial Probit (MNP),
Multivariate Probit, Negative Binomial (Poisson) Regression, Multivariate
Mixtures of Normals (including clustering), Dirichlet Process Prior Density
Estimation with normal base, Hierarchical Linear Models with normal prior and
covariates, Hierarchical Linear Models with a mixture of normals prior and
covariates, Hierarchical Multinomial Logits with a mixture of normals prior
and covariates, Hierarchical Multinomial Logits with a Dirichlet Process
prior and covariates, Hierarchical Negative Binomial Regression Models,
Bayesian analysis of choice-based conjoint data, Bayesian treatment of linear
instrumental variables models, and Analysis of Multivariate Ordinal survey
data with scale usage heterogeneity (as in Rossi et al, JASA (01)).

WWW: http://www.perossi.org/home/bsm-1
2011-03-07 12:04:35 +00:00
Wen Heping
a850098cd5 R-cran-AMORE was born to release the TAO robust neural network algorithm
to the R users. It has grown and I think it can be of interest for
the users wanting to implement their own training algorithms as well as
for those others whose needs lye only in the "user space".

WWW: http://rwiki.sciviews.org/doku.php?id=packages:cran:amore
2011-03-07 10:57:09 +00:00
Martin Wilke
7cc8e29f07 - Chase math/plplot shlib bump 2011-03-04 15:28:53 +00:00
Martin Wilke
b7876fe950 - Chase ginac shlib bump 2011-03-04 14:08:57 +00:00