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Author SHA1 Message Date
Dennis Herrmann
e62c73f7b8 - Update to 2.1.0.0 2010-08-09 17:53:50 +00:00
Li-Wen Hsu
5be8d64cbb - Update to 3.4.1 
PR:		ports/149415
Submitted by:	Frederic Culot <frederic AT culot.org>
 2010-08-08 09:22:03 +00:00
Gabor Pali
cad06c6077 - Add DIST_SUBDIR for Haskell Cabal ports (with default of "cabal") 
Suggested by:	admi3
 2010-08-08 08:49:38 +00:00
Pav Lucistnik
e71b4d43f0 - Update to 9 
PR:		ports/149158
Submitted by:	Frederic Culot <frederic@culot.org>
 2010-07-31 22:13:27 +00:00
Gabor Pali
342016568a - Update to 0.4.6 2010-07-30 09:14:14 +00:00
Pav Lucistnik
29e4fbb3a5 - Correct PORTSDIRS -> PORTSDIR 
PR:		ports/149023
Submitted by:	Timothy Beyer <beyert@cs.ucr.edu>
 2010-07-28 08:40:11 +00:00
Tong LIU
49fed5b47e - Update from 3.0.3 to 3.1.0. 
PR:	ports/148972
Submitted by:	Chris Rees <utisoft@gmail.com> (maintainer)
 2010-07-27 15:07:33 +00:00
Sahil Tandon
c6bff60f4a - Update to 1.4.5.1 
PR:		ports/148906
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net> (maintainer)
 2010-07-25 14:22:40 +00:00
Koop Mast
81b9f7269f Update to 0.12.1. 
Add license.
 2010-07-25 10:37:47 +00:00
Martin Matuska
dfc28b2b23 Update ImageMagick to 6.6.2-10 2010-07-24 19:49:59 +00:00
Wesley Shields
7f1d84e418 Update to 0.47 
PR:		ports/148721
Submitted by:	Steve Wills <steve@stevenwills.com> (maintainer)
 2010-07-22 13:41:46 +00:00
Ashish SHUKLA
7d375bc1fd - Remove the port from 'science' category. 
PR:		ports/146513
Approved by:	pgj (mentor)
 2010-07-21 09:53:14 +00:00
Ashish SHUKLA
d976a44c9c QElectroTech is a Qt4 application to design electric diagrams. It uses XML 
files for elements and diagrams, and includes both a diagram editor and an
element editor.

WWW:	http://qelectrotech.org/

PR:		ports/146513
Submitted by:	Gvozdikov Veniamin <g.veniamin at googlemail.com>
Approved by:	tabthorpe (mentor)
 2010-07-21 03:27:25 +00:00
Sahil Tandon
f84d275af4 - Update to 1.0.1 
- un-IGNORE when WITH_PYTHON is defined

PR:		ports/148399
Submitted by:	Troels Kofoed Jacobsen <tkjacobsen@gmail.com> (maintainer)
 2010-07-16 01:29:59 +00:00
Thomas Abthorpe
c81ffae271 - Update to 3.0.3 
PR:		ports/148517
Submitted by:	Chris Rees <utisoft gmail.com> (maintainer)
 2010-07-15 13:19:08 +00:00
Dennis Herrmann
9666a2e3eb - Update to 2.0.4.7 2010-07-14 19:42:54 +00:00
Cheng-Lung Sung
bad53b76a8 - Update to 0.54 2010-07-12 09:17:02 +00:00
Wen Heping
ce991f8360 - Update to 3.4.0 
Feature safe:	yes
 2010-07-06 01:45:21 +00:00
Wen Heping
e5e2dee718 - Update to 0.006 
- Reset maintainer to perl@

Feature safe:	yes
 2010-07-04 02:35:49 +00:00
Wen Heping
ec6f63e60b - Update MASTER_SITES 
PR:		ports/148226
Submitted by:	Chris Rees <utisoft@gmail.com> (maintainer)
Feature safe:	yes
 2010-06-30 01:52:58 +00:00
Wen Heping
3bc13a27ce JStrack is written by and for people who are in areas that are 
prone to hits from tropical systems (currently only in the Tropical
Atlantic). It's intended to display the NHC/TPC data and give you
what you need to make decisions, etc.. It does NOT, nor will it ever,
attempt to do any forecasting on its own---I leave that to the gurus
at the NHC/TPC.

WWW: http://www.jstrack.org/jstrack/

PR:		ports/148208
Submitted by:	Chris Rees <utisoft@gmail.com>
Feature safe:	yes
 2010-06-29 01:22:16 +00:00
Gerald Pfeifer
5f8aa4f636 Replace USE_GCC=4.3+ by USE_GCC=4.4+ (which, practically, is no change 
since Mk/bsd.gcc.mk has been rewriting the former to the later for a bit.)

Approved by:	tkjacobsen@gmail.com (maintainer)
Feature safe:	yes
 2010-06-27 21:16:33 +00:00
Max Brazhnikov
c42058742f Update to 2.2.3 
Feature safe:	yes
 2010-06-26 19:17:44 +00:00
Max Brazhnikov
2d40fb4735 Update to 2.1.17 
PR:		ports/148064 (in follow-up)
Submitted by:	Sunpoet Po-Chuan Hsieh (maintainer)
Feature safe:	yes
 2010-06-26 08:49:08 +00:00
Max Brazhnikov
3032248304 Update to 2.1.16 
Pass maintainership to submitter

PR:		ports/148064
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet at sunpoet.net>
Feature safe:	yes
 2010-06-25 22:22:05 +00:00
Rong-En Fan
c4e482cce2 - Update to 1.60 
Feature safe:	yes
 2010-06-25 14:26:18 +00:00
Wen Heping
8c12caebf5 - Update to 0.9.4.1 
- Update my email to FreeBSD

Feature safe:	yes
 2010-06-25 02:39:08 +00:00
Pav Lucistnik
d621e89c6f - Update to 3.2.3 
PR:		ports/145939
Submitted by:	Ruslan Mahmatkhanov <cvs-src@yandex.ru>
Approved by:	maintainer
Feature safe:	yes
 2010-06-24 12:07:17 +00:00
Maho Nakata
41dda7a988 add pkg-message when gamess won't run and bump portrevision accordingly. 2010-06-17 10:40:46 +00:00
Mark Linimon
bc2e3dd168 Reset maintainer at his request. 
PR:		ports/147838
 2010-06-15 01:01:13 +00:00
Wen Heping
9762dfd9bd - Update to 2.6.1 
PR:		ports/147743
Submitted by:	Rob Farmer <rfarmer@predatorlabs.net> (maintainer)
 2010-06-10 11:43:09 +00:00
Koop Mast
e2ccb08a37 Chase goffice update. 2010-06-08 12:20:08 +00:00
Philip M. Gollucci
c00c23c0d4 - Update to 0.6.4 2010-06-08 00:21:17 +00:00
Martin Wilke
6823d79942 - Fix build 
PR:		146745
Submitted by:	Stas Timokhin <devel@stasyan.com> (maintainer)
 2010-06-06 07:20:54 +00:00
Dirk Meyer
da5e61df79 LICENSE GPLv2 2010-06-05 19:53:32 +00:00
Max Brazhnikov
1504a2809c Update to 3.8.0 
PR:		ports/147266
Submitted by:	Stas Timokhin (maintainer)
 2010-06-05 13:07:51 +00:00
Dirk Meyer
bad8a42899 LICENSE LGPL21 2010-06-05 06:14:28 +00:00
Mark Linimon
db9f34be72 Don't build packages for this on the Tier-2 archs; we simply don't 
have enough power on the nodes, and this winds up slowing down our
builds.

Hat:		portmgr
 2010-06-04 02:56:24 +00:00
Wen Heping
8cb53637bd - Update to 11.8.24 2010-06-03 08:22:14 +00:00
Ade Lovett
8d837132c7 Bounce PORTREVISION for gettext-related ports. Have fun, ya'll. 2010-05-31 02:01:56 +00:00
Dirk Meyer
ca8e128e62 - drop USE_GNUSTEP_PREFIX 2010-05-30 12:28:39 +00:00
Wen Heping
0bb626ff74 - Fix mans 
- Remove USE_LDCONFIG

PR:		ports/146795
Submitted by:	Gvozdikov Veniamin <g.veniamin@googlemail.com> (maintainer)
 2010-05-27 06:07:41 +00:00
Giuseppe Pilichi
e951cb6d07 - Pass maintainership to haskell@FreeBSD.org: 
audio/hs-ALUT, audio/hs-OpenAL, benchmarks/hs-criterion
    converters/hs-json, devel/hs-DeepArrow, devel/hs-FileManip
    devel/hs-MemoTrie, devel/hs-MissingH, devel/hs-MonadCatchIO-mtl
    devel/hs-ObjectName, devel/hs-QuickCheck, devel/hs-StateVar
    devel/hs-Tensor, devel/hs-TypeCompose, devel/hs-arrows
    devel/hs-checkers, devel/hs-convertible, devel/hs-datetime
    devel/hs-deepseq, devel/hs-fgl, devel/hs-ghc-mtl, devel/hs-ghc-paths
    devel/hs-ghc-paths-docs, devel/hs-haskeline
    devel/hs-haskell-src-exts, devel/hs-hint, devel/hs-hoogle
    devel/hs-hslogger, devel/hs-mmap, devel/hs-mueval, devel/hs-reactive
    devel/hs-readline, devel/hs-safe, devel/hs-show, devel/hs-smallcheck
    devel/hs-split, devel/hs-testpack, devel/hs-transformers
    devel/hs-unamb, devel/hs-uniplate, devel/hs-unix-compat
    devel/hs-utility-ht, devel/hs-uuagc, devel/hs-uulib
    devel/hs-uvector, devel/hs-uvector-algorithms, graphics/hs-HGL
    lang/hs-brainfuck, lang/hs-unlambda, mail/hs-mime, math/hs-Agda
    math/hs-Agda-executable, math/hs-category-extras, math/hs-erf
    math/hs-mwc-random, math/hs-probability, math/hs-statistics
    math/hs-vector-space, print/hs-hscolour, print/hs-hscolour-docs
    science/hs-bio, textproc/hs-Diff, textproc/hs-feed
    textproc/hs-tagsoup, textproc/hs-texmath, textproc/hs-xml
    www/hs-HTTP, www/hs-cgi, www/hs-fastcgi, www/hs-http-server
    www/hs-oeis, www/hs-scgi, www/hs-url, x11-toolkits/hs-GLURaw
    x11-toolkits/hs-OpenGLRaw

Approved by:	pgj (mentor)
 2010-05-26 11:18:46 +00:00
Thierry Thomas
8baeafe842 Force WITH_FFTW3 when PACKAGE_BUILDING, in order to avoid changing the 
dependencies during the build.

Reported by:	pointyhat via Pav
 2010-05-25 21:54:55 +00:00
Li-Wen Hsu
a9d9e51855 - Update to 1.4.4 
PR:		ports/146861
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
 2010-05-23 10:21:00 +00:00
Max Brazhnikov
3729defbd9 Add optional dependency on kdebase3 2010-05-22 16:19:03 +00:00
Koop Mast
fa4b8be7e8 Chase devel/goffice update. 2010-05-21 23:08:53 +00:00
Li-Wen Hsu
eb0b305094 - Fix build, abinit builds with science/netcdf3-ftn 
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net>
Approved by:	maho
Notified by:	pav
 2010-05-20 14:28:00 +00:00
Li-Wen Hsu
6b5d374bea - Since we have netcdf3-ftn, remove netcdf3 part from Makefile. 
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net>
kVS: ----------------------------------------------------------------------
 2010-05-20 14:25:09 +00:00
Li-Wen Hsu
e4d1bb5df1 Add netcdf3-ftn , netCDF (network Common Data Form), with Fortran 
support.

Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net>
 2010-05-20 14:21:43 +00:00
Gabor Pali
955308f810 - Fix build problem caused by the recent textproc/hs-tagsoup update 
- Port PORTREVISION
- Tidy up pkg-descr

Reported by:	LambdaBSD-exp
Approved by:	jacula (maintainer)
 2010-05-20 10:39:45 +00:00
Wen Heping
cc8da973ab The massXpert project aims at providing (bio)chemists with a software 
package allowing the following:

* User-specific atom definitions and polymer chemistry definitions;
* Powerful sequence editing with user-defined glyphs for each monomer
and monomer chemical modification. Multi-region selections;
* Polymer sequence chemical/enzymatic cleavage;
* Intramolecular cross-linking, like disulfide bonds with total resolution
of the peptides generated upon enzymatic cleavage;
* Gas-phase fragmentation of oligomers;
* Mass-to-charge ratio calculations with inline change of ionization agent;
* Calculation of net electrical charge and of isoelectric point (even by
taking into account monomer modifications if polymer is a protein);
* Simulation of isotopic patterns for any chemical formula and z charge;
* A number of plugins allow 1) translation of the sequence from one format
to another (using a dictionary, like between the 1-letter code and the 3-letter
code of proteins) 2) conversion of number format according to any localized
number format 3) sort mass lists.

PR:		ports/146564
Submitted by:	Gvozdikov Veniamin <g.veniamin@googlemail.com>
 2010-05-20 09:43:14 +00:00
Wen Heping
8d3cf83cc4 PyNN(pronounced 'pine') is a simulator-independent language for 
building neuronal network models.

WWW: http://neuralensemble.org/trac/PyNN
 2010-05-19 05:31:44 +00:00
Wen Heping
d85961f518 - Remove pyNN and re-add as pynn 
Reviewed by:	danfe@
 2010-05-19 00:14:14 +00:00
Wen Heping
e424150d98 PyNN(pronounced 'pine') is a simulator-independent language for 
building neuronal network models.

WWW: http://neuralensemble.org/trac/PyNN

PR:		ports/146664
Submitted by:	Ju Pengfei <jupengfei@gmail.com>
 2010-05-18 08:14:12 +00:00
Li-Wen Hsu
16fe7034f6 - Fix duplicated LATEST_LINK 
PR:		ports/146620
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
 2010-05-15 18:37:25 +00:00
Li-Wen Hsu
11091d341d - Add netcdf 4.x support 
PR:		ports/146416
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
 2010-05-15 06:26:13 +00:00
Li-Wen Hsu
01453a0214 - Add option FORTRAN 
- Recall SZIP, fix typo (LIB_DEPEND -> LIB_DEPENDS)
- Sort pkg-plist
- Space/Tab twiddle

PR:		146416
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
 2010-05-15 05:47:32 +00:00
Li-Wen Hsu
1493eb07a1 - Update MASTER_SITES 
- Simplify NOPORTDOCS patch
- Remove NOPORTEXAMPLES section
- Remove unnecessary post-install: target
- Remove patch for fortran/cfortran.h

PR:		ports/146415
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
 2010-05-15 05:40:57 +00:00
Wen Heping
ca2b50e203 - Update to 3.3.0 
- Reset maintainer
 2010-05-13 06:08:26 +00:00
Gabor Pali
ec29a59ec3 Introduce a new (and hopefully better) ports infrastructure for Haskell Cabal 
ports which makes possible the direct translation of Cabal package
descriptions to FreeBSD ports.  It promises both easier addition and
maintenance for Cabal-based ports.
 2010-05-12 16:33:59 +00:00
Beat Gaetzi
d717f25f58 Bddsolve is a BDD-based tool for solving satisfiability and reachability 
problems.  It uses the BDD package Buddy as a backend.

WWW: http://www.win.tue.nl/~wieger/bddsolve/

Submitted by:	ed@
 2010-05-12 13:25:37 +00:00
Koop Mast
48e62d9a37 Presenting GNOME 2.30.1 for FreeBSD. The offical release notes for this 
release can be found at http://library.gnome.org/misc/release-notes/2.30/ .

This release brings initial PackageKit support, Upower (replaces power
management part of hal), cuse4bsd integration with HAL and cheese, and a
faster Evolution.

Sadly GNOME 2.30.x will be the last release with FreeBSD 6.X support. This
will also be the last of the 2.x releases. The next release will be the
highly-anticipated GNOME 3.0 which will bring with it a new UI experience.

Currently, there are a few bugs with GNOME 2.30 that may be of note for our
users. Be sure to consult the UPGRADING note or the 2.30 upgrade FAQ at
http://www.freebsd.org/gnome/docs/faq230.html for specific upgrading
instructions, and the up-to-date list of known issues.

This release features commits by avl, ahze, bland, marcus, mezz, and myself.

The FreeBSD GNOME Team would like to thank Anders F Bjorklund for doing the
initual packagekit porting.

And the following contributors & testers for there help with this release:
Eric L. Chen
Vladimir Grebenschikov
Sergio de Almeida Lenzi
DomiX
walder
crsd
Kevin Oberman
Michal Varga
Pavel Plesov
Bapt
kevin

and ITetcu for two exp-run

PR:	ports/143852
	ports/145347
	ports/144980
	ports/145830
	ports/145511
 2010-05-10 21:19:08 +00:00
Greg Larkin
fa6e62b9ce - Fixed WWW: link 
Submitted by:	sunpoet@sunpoet.net (via email)
 2010-05-05 14:53:19 +00:00
Li-Wen Hsu
9f64b86a3a - Update to 1.4.3 
- Update MASTER_SITES, WWW

PR:		ports/146326
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer)
 2010-05-05 12:40:59 +00:00
Greg Larkin
f15f31f38e - Added missing pkg-plist entry 
Reported by:	QAT
 2010-05-04 18:19:52 +00:00
Greg Larkin
aa8cd682fb - Update to 1.8.4 
PR:		ports/144782
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
Approved by:	koziol@hdfgroup.org (maintainer, implicit, timeout - 49 days)
 2010-05-04 17:50:41 +00:00
Pav Lucistnik
794668d673 - Mark BROKEN on sparc64 
PR:		ports/146127
Submitted by:	Chris Petrik <chris@officialunix.com> (maintainer)
 2010-05-04 11:43:33 +00:00
Thierry Thomas
8b06721073 Trying to chase Zlib's upgrade in -CURRENT. 
Reported by:	pointyhat via droso
Seen with:	delphij
 2010-05-01 12:34:56 +00:00
Cheng-Lung Sung
3176e12adb - Update to 1.0.0 
PR:		ports/144129
Submitted by:	maintainer (Shin'ya Murakami)
 2010-04-28 06:00:33 +00:00
Wen Heping
22e59832ec - Update to 0.7.2 
PR:		ports/146008
Submitted by:	Wen Heping (myself)
Approved by:	maintainer
 2010-04-26 07:17:47 +00:00
Thierry Thomas
bf24eb1d58 Upgrade to 3.5.1. 
Changelog at
<http://www-drfmc.cea.fr/sp2m/L_Sim/V_Sim/changelog.en.html#3.5.1>.
 2010-04-25 19:57:37 +00:00
Max Brazhnikov
e1c5589409 Update to 1.9.1 2010-04-25 11:14:36 +00:00
Wen Heping
adbba925de - Update to 4.1.1 
PR:		ports/145923
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net> (maintainer)
 2010-04-22 03:25:38 +00:00
Cheng-Lung Sung
73462a351f - Update to 0.53 2010-04-20 03:36:51 +00:00
Wen Heping
4e248fdb7d - Update to 0.9.1 2010-04-11 23:28:17 +00:00
Rong-En Fan
ffd3486719 - Requires GCC 4.x only if we are on 6.x 
PR:		ports/145255
Submitted by:	Chris Petrik <chris at officialunix.com> (maintainer)
 2010-04-07 02:57:47 +00:00
Sylvio Cesar Teixeira
203cdb19f8 - Update to 0.25 
PR:		ports/145350
Submitted by:	Steve Wills <steve@mouf.net> (maintainer)
Approved by:	itetcu (mentor, implicit)
 2010-04-05 23:25:24 +00:00
Rong-En Fan
28dab58bbc Update to 2.91 which includes a new rewritten Python interface 2010-04-05 10:24:25 +00:00
Pietro Cerutti
2a9788b2af - Chase math/vtk5 update 2010-04-03 15:36:30 +00:00
Martin Wilke
83e3ba00ba Perl modules for molecular chemistry 
WWW:	http://search.cpan.org/dist/PerlMol/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
 2010-04-02 15:36:26 +00:00
Martin Wilke
a6af1d634f Perl module which parses a SMILES (Simplified Molecular Input Line Entry 
Specification) string.

WWW:	http://search.cpan.org/dist/Chemistry-File-SMILES/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
 2010-04-02 15:35:47 +00:00
Martin Wilke
e576408592 Perl module implements an object class for representing internal 
coordinates and provides methods for converting them to Cartesian
coordinates.

WWW:	http://search.cpan.org/dist/Chemistry-InternalCoords/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
 2010-04-02 15:35:23 +00:00
Martin Wilke
4af115e4ea Perl module which will parse a SMARTS (SMiles ARbitrary Target Specification) 
string, generating a Chemistry::Pattern object. It is a file I/O driver for
the PerlMol toolkit.

WWW:	http://search.cpan.org/dist/Chemistry-File-SMARTS/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
 2010-04-02 15:34:39 +00:00
Martin Wilke
4eb372dfc7 Perl module which generates a three-dimensional molecular structure from a 
connection table, such as that obtained by a 2D representation of the
molecule or from a SMILES string.

WWW:	http://search.cpan.org/dist/Chemistry-3DBuilder/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net
 2010-04-02 15:33:52 +00:00
Martin Wilke
7edfd85264 SLN linear notation parser/writer 
WWW:	http://search.cpan.org/dist/Chemistry-File-SLN/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
 2010-04-02 15:33:24 +00:00
Martin Wilke
4deddb544f Perl module which will parse a SMARTS (SMiles ARbitrary Target Specification) 
string, generating a Chemistry::Pattern object. It is a file I/O driver for
the PerlMol toolkit.

WWW:	http://search.cpan.org/dist/Chemistry-File-SMARTS/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
 2010-04-02 15:32:52 +00:00
Martin Wilke
31412b24c1 MOPAC 6 input file reader/writer 
WWW:	http://search.cpan.org/dist/Chemistry-File-Mopac/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
 2010-04-02 15:32:24 +00:00
Martin Wilke
0c0fc43cf8 Explicit chemical reactions 
WWW:	http://search.cpan.org/dist/Chemistry-Raction/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
 2010-04-02 15:32:03 +00:00
Martin Wilke
e686fdf65d Match molecule by formula 
WWW:	http://search.cpan.org/dist/Chemistry-ForumulaPattern/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
 2010-04-02 15:31:34 +00:00
Martin Wilke
c85c1cf3b1 Select atoms in macromolecule 
WWW:	http://search.cpan.org/dist/Chemistry-MidasPattern/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
 2010-04-02 15:29:58 +00:00
Martin Wilke
c19a7ca028 Perl molecular awk interpreter 
WWW:	http://search.cpan.org/dist/Chemistry-Mok/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
 2010-04-02 15:29:35 +00:00
Martin Wilke
4b9751f871 XYZ molecule format reader/writer 
WWW:	http://search.cpan.org/dist/Chemistry-File-XYZ/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
 2010-04-02 15:28:42 +00:00
Martin Wilke
3e051c0a76 Generate VRML models for molecules 
WWW:	http://search.cpan.org/dist/Chemistry-File-VRML/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
 2010-04-02 15:28:04 +00:00
Martin Wilke
b0bc65a895 Perl module which provides some basic methods for representing a ring. 
WWW:	http://search.cpan.org/dist/Chemistry-Ring/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
 2010-04-02 15:27:22 +00:00
Martin Wilke
2f7bf2888c Perl module which contains the exact mass data from the table of the isotopes. 
WWW:	http://search.cpan.org/dist/Chemistry-Isotope/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
 2010-04-02 15:26:37 +00:00
Martin Wilke
be4a09a2d8 Perl module which implements basic pattern matching for molecules. 
WWW:	http://search.cpan.org/dist/Chemistry-Pattern/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
 2010-04-02 15:25:56 +00:00
Martin Wilke
b9c5628b0d Perl module which provides functions for "canonicalizing" a molecular 
structure; that is, to number the atoms in a unique way regardless of the
input order.

WWW:	http://search.cpan.org/dist/Chemistry-Canonicalize/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
 2010-04-02 15:25:12 +00:00
Martin Wilke
5fd8c153ed Perl module which provides functions for detecting the bonds in a molecule from 
its 3D coordinates by using simple cutoffs, and for guessing the formal bond
orders.

WWW:	http://search.cpan.org/dist/Chemistry-Bond-Find/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>
 2010-04-02 15:24:14 +00:00
Mark Linimon
2607e9a53b Not for powerpc, either. 
Hat:		portmgr
 2010-04-01 10:24:44 +00:00
Dirk Meyer
ecbafa3aa2 - fix build for png-1.4.1 2010-03-30 04:48:54 +00:00
Wen Heping
09f5aec198 - Update to 3.2.0 2010-03-30 01:24:46 +00:00
Dirk Meyer
271b9dc1ca - fix build for png-1.4.1 2010-03-29 20:26:26 +00:00
Wen Heping
6905d4a0d8 - Bump PORTREVISION to chase the update of math/gsl 2010-03-29 01:12:27 +00:00
Martin Matuska
779a04d1f7 - Bump Magick++, MagickWand or MagickCore dependency 2010-03-28 21:41:12 +00:00
Dirk Meyer
de78af3ac5 - update to 1.4.1 
Reviewed by:	exp8 run on pointyhat
Supported by:	miwi
 2010-03-28 06:47:48 +00:00
Pietro Cerutti
c6a2501ef2 - Chase x11-toolkits/fltk update 2010-03-23 21:14:39 +00:00
Mark Linimon
42d97f9b8d Mark as broken on sparc64: fails to compile. 
Hat:		portmgr
 2010-03-22 06:11:52 +00:00
Pav Lucistnik
5740029082 - Update to 0.10.12 2010-03-16 15:30:41 +00:00
Joe Marcus Clarke
88654e6060 Chase goffice update. 2010-03-13 23:31:30 +00:00
Pav Lucistnik
2bbd299830 - The maintainer reappeared 
Requested by:	the maintainer
 2010-03-13 20:12:16 +00:00
Dennis Herrmann
571442219a - Update to 2.0.4.6 2010-03-12 12:28:58 +00:00
Martin Wilke
d9e1343c5a - Update to 2.1.14 
PR:		144428
Submitted by:	Ports Fury
 2010-03-08 23:14:22 +00:00
Pav Lucistnik
ed76d9d3b1 - Mark BROKEN: does not compile 
Reported by:	pointyhat
Feature safe:	yes
 2010-03-02 23:08:23 +00:00
Max Brazhnikov
cf862f9ca4 Update to 3.6.2 
Pass maintainership to submitter
Mark MAKE_JOBS_SAFE

PR:		ports/144260
Submitted by:	Stas Timokhin <devel at stasyan.com>

Feature safe:	yes
 2010-02-27 09:17:24 +00:00
Wen Heping
3eea4d1e4a - Update to 3.1.3 
Feature safe:	yes
 2010-02-25 07:18:49 +00:00
Wesley Shields
02141f8f7f - Remove comments from IGNORE section. Left in by mistake with last commit. 
Feature safe:	yes
 2010-02-22 19:58:52 +00:00
Wesley Shields
1deef0cb6a - Update to 1.8.7 
- Pass maintainer to submitter

PR:		ports/142513
Submitted by:	Ben Kaduk <kaduk@mit.edu>
Feature safe:	yes
 2010-02-22 14:22:45 +00:00
Mark Linimon
407f682ded Not for ia64, either. 
Feature safe:	yes
 2010-02-17 10:58:47 +00:00
Maho Nakata
779838525c Fix SMP run on amd64, and bump port revision 
Submitted by:	Katsuya KANDA
Feature safe:	yes
 2010-02-16 23:53:17 +00:00
Maho Nakata
47d8aef650 Build fix with gotoblas. 
Feature safe:	yes.
 2010-02-16 07:23:49 +00:00
Maho Nakata
4c5f9cfbc3 Fix build with recent update of gotoblas(2). 
Feature safe:	yes
 2010-02-16 05:51:43 +00:00
Joe Marcus Clarke
39d8ab8b6c Chase the goffice 0.8.0 update. 2010-02-14 20:49:18 +00:00
Martin Wilke
3ab2c72352 The HDF Java Products include a visual tool for browsing and editing HDF 
files, a Java package providing an object-oriented interface to HDF data
objects, and Java Native Interfaces to the standard HDF libraries.

WWW: http://www.hdfgroup.org/hdf-java-html/index.html

PR:		ports/143859
Submitted by:	rfarmer at predatorlabs.net
 2010-02-13 11:21:53 +00:00
Wen Heping
7606bddc6a - Update to 0.9 
- Update my mail address to FreeBSD
 2010-02-10 07:41:13 +00:00
Martin Wilke
ac789ce3ba - Update to 1.4.1 
PR:		143516
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net> (maintainer)
 2010-02-08 22:03:10 +00:00
Dirk Meyer
ca9c60461c - update to jpeg-8 2010-02-05 11:46:55 +00:00
Wen Heping
57c6a10e24 - Update to 1.2.0 2010-02-03 14:05:42 +00:00
Wen Heping
2914332651 - Update to 1.60.00 2010-02-03 12:56:44 +00:00
Martin Wilke
409b2a3045 - Update to 1.1.1 
PR:		143442
Submitted by:	Ports Fury
 2010-02-02 22:43:01 +00:00
Wen Heping
f8b32a7c58 - Update to 3.1.2 2010-02-02 05:55:43 +00:00
Li-Wen Hsu
86cafb7292 - Add py-numpy into RUN_DEPENDS 
PR:		ports/143419
Submitted by:	TAOKA Fumiyoshi <fmysh AT iijmio-mail.jp> (maintainer)
 2010-02-01 11:27:58 +00:00
Maho Nakata
eb6f249e7a Update to 20090112 R3. 2010-02-01 03:31:59 +00:00
Dennis Herrmann
041e767d31 - Update to 2.0.4.5 2010-01-31 11:27:48 +00:00
Joe Marcus Clarke
133dea8c1b Chase the goffice version bump. 2010-01-30 23:08:36 +00:00
Dima Panov
afb550e3cf The KDE FreeBSD team is proud to announce the release of SIP-4.10 and 
PyQt-4.7 for FreeBSD. The official update notes can be found at
http://www.riverbankcomputing.com

We'd like to say thanks to all helpers, testers and submitters.
 2010-01-30 14:27:27 +00:00
Wen Heping
551d43b724 Meep (or MEEP) is a free finite-difference time-domain (FDTD) simulation 
software package developed at MIT to model electromagnetic systems,
along with our MPB eigenmode package.

WWW: http://ab-initio.mit.edu/wiki/index.php/Meep

PR:		ports/142158
Submitted by:	Stas Timokhin <devel@stasyan.com>
 2010-01-25 00:27:10 +00:00
Wen Heping
5f67621cda - Bump PORTREVISION to chase the update of libctl 2010-01-24 02:14:17 +00:00
Wen Heping
ce6bd0ba61 - Update to 3.1 
- Fix the build and unbreak on FreeBSD-6

PR:		ports/142158
Submitted by:	Stas Timokhin <devel@stasyan.com>
 2010-01-24 02:11:31 +00:00
Gabor Kovesdan
ee3e677c23 - Track textproc/docbook-410 dependency after recent changes 
Approved by:	portmgr (pav, erwin)
 2010-01-23 16:01:27 +00:00
Martin Wilke
e3cbd92ea4 - Update to 3.3.0 
PR:		142950
Submitted by:	Stephen Montgomery-Smith <stephen@missouri.edu> (maintainer)
 2010-01-21 21:14:54 +00:00
Wen Heping
71db512b3b - Update to 3.0.7 2010-01-21 08:09:16 +00:00
Philip M. Gollucci
5eccbb21e0 - remove broken/expired ports@ ports 
Approved by: portmgr (miwi)

audio/ccaudio||2010-01-18|Has expired: has been broken for 4 months
audio/py-libmpdclient||2010-01-18|Has expired: has been broken for 3 months
chinese/gbk2uni||2010-01-18|Has expired: has been broken for 6 months
chinese/iiimf-le-xcin||2010-01-18|Has expired: has been broken for 3 months
devel/adabindx||2010-01-18|Has expired: has been broken for 3 months
devel/agide||2010-01-18|Has expired: has been broken for 6 months
devel/asis||2010-01-18|Has expired: has been broken for 3 months
devel/callgrind||2010-01-18|Has expired: Included in devel/valgrind
devel/florist||2010-01-18|Has expired: has been broken for 3 months
editors/xml2rfc-xxe||2010-01-18|Has expired: has been broken for 4 months
graphics/gephex||2010-01-18|Has expired: has been broken for 3 months
graphics/irit||2010-01-18|Has expired: has been broken for 3 months
graphics/pixieplus||2010-01-18|Has expired: has been broken for 6 months
japanese/expect||2010-01-18|Has expired: has been broken for 3 months
lang/pnetc||2010-01-18|Has expired: has been broken for 5 months
mail/libnewmail||2010-01-18|Has expired: has been broken for 3 months
net-mgmt/flowscan||2010-01-18|Has expired: has been broken for 5 months
net/astmanproxy||2010-01-18|Has expired: has been broken for 3 months
palm/prc-tools||2010-01-18|Has expired: has been broken for 4 months
print/latex-msc||2010-01-18|Has expired: has been broken for 3 months
science/xloops-ginac||2010-01-18|Has expired: has been broken for 3 months
shells/bush||2010-01-18|Has expired: has been broken for 3 months
textproc/iiimf-gnome-im-switcher||2010-01-18|Has expired: has been broken for 4 months
textproc/iiimf-gtk||2010-01-18|Has expired: has been broken for 3 months
x11-toolkits/gtkada-devel||2010-01-18|Has expired: has been broken for 3 months
x11-toolkits/gtkada||2010-01-18|Has expired: has been broken for 3 months
x11-wm/ion-2||2010-01-18|Has expired: has been broken for 4 months
 2010-01-18 06:46:44 +00:00
Wen Heping
dd998fd1cb Geo::WebService::Elevation::USGS executes elevation queries against the 
United States Geological Survey's web server. You provide the latitude
and longitude in degrees, with south latitude and west longitude being
negative. The return is typically a hash containing the data you want.
Query errors are exceptions by default, though the object can be configured
to signal an error by an undef response, with the error retrievable from
the 'error' attribute.

WWW: http://search.cpan.org/dist/Geo-WebService-Elevation-USGS/
 2010-01-15 07:20:43 +00:00
Wen Heping
6db90d9f58 - Update to 3.0.5 2010-01-15 06:21:10 +00:00
Dennis Herrmann
ca5251cf4d - Update to 2.0.4.4 2010-01-14 17:34:56 +00:00
Dmitry Marakasov
c044e7dcac qtResistors - calculate resistance of resistor by the colors on the resistor 
WWW:	http://qt-apps.org/content/show.php/qtResistors?content=118297

PR:		142554
Submitted by:	zloidemon <g.veniamin@googlemail.com>
 2010-01-13 19:26:59 +00:00
Tong LIU
574db40825 - Update to 1.4 
PR:	ports/142562
Submitter:	Igor Serikov <iserikov@acm.org> (maintainer)
 2010-01-12 03:02:16 +00:00
Wen Heping
f95978f2d1 py-DendroPy is a python library for phylogenetic scripting, 
simulation, data processing and manipulation.

WWW:    http://packages.python.org/DendroPy/
 2010-01-09 12:19:58 +00:00
Edwin Groothuis
5afee83c9e Change maintainer address on request of maintainer via a private email chat. 2010-01-08 11:07:34 +00:00
Gabor Pali
80bc5be124 This is a collection of Haskell data structures and algorithms useful for 
building bioinformatics-related tools and utilities.
Current list of features includes: a Sequence data type supporting
protein and nucleotide sequences and conversion between them.

WWW: http://blog.malde.org/index.php/the-haskell-bioinformatics-library/

PR:		ports/142187
Submitted by:	Jacula Modyun <jacula(at)gmail.com>
 2010-01-03 05:02:13 +00:00
Wen Heping
085fe92c93 Harminv is a free program (and accompanying library) to solve the problem 
of harmonic inversion - given a discrete-time, finite-length signal
that consists of a sum of finitely-many sinusoids (possibly exponentially
decaying) in a given bandwidth, it determines the frequencies, decay
constants, amplitudes, and phases of those sinusoids.

WWW: http://ab-initio.mit.edu/wiki/index.php/Harminv

PR:		ports/142154
Submitted by:	Stas Timokhin <devel@stasyan.com>
 2010-01-02 02:54:00 +00:00
Thierry Thomas
b262319bab Upgrade to 0.9rc3. 
PR:		ports/141809
Submitted by:	Sylwester Arabas <slayoo (at) igf.fuw.edu.pl>
 2009-12-29 13:43:25 +00:00
Wen Heping
a62fccea4b - Update to 3.1.3 
- Add file pkg-message

PR:		ports/141767
Submitted by:	Anders Troback <freebsd@troback.com> (maintainer)
 2009-12-28 06:54:49 +00:00
Doug Barton
2fadfa2cfb For ports maintained by ports@FreeBSD.org, remove names and/or 
e-mail addresses from the pkg-descr file that could reasonably
be mistaken for maintainer contact information in order to avoid
confusion on the part of users looking for support. As a pleasant
side effect this also avoids confusion and/or frustration for people
who are no longer maintaining those ports.
 2009-12-21 02:19:12 +00:00
Pav Lucistnik
55678ae39b - Mark BROKEN on 6.x 
Reported by:	pointyhat
 2009-12-20 13:39:22 +00:00
Joe Marcus Clarke
c3c051c68a Chase the gchemutils update. 2009-12-18 06:39:57 +00:00
Mark Linimon
b641caf81b Reset maintainer at his request. 
PR:		ports/141647
 2009-12-15 19:48:26 +00:00
Martin Wilke
1b1b29c5e6 - Get rip python 2.3+ 
Note:
Python 2.3 is't longer supported and have a lot of security issues.
Convert 2.3+ to yes/or 2.4/5+

With hat:	portmgr
 2009-12-13 17:00:14 +00:00
Martin Wilke
df9917ecb6 - Update to 4.0.7 
PR:		141284
Submitted by:	Florian Smeets <flo@kasimir.com> (maintainer)
 2009-12-13 00:21:04 +00:00
Dmitry Marakasov
9b2c941601 - Add CONFLICTS with science/hdf5-18 
PR:		140729
Submitted by:	Alexey Shuvaev <shuvaev@physik.uni-wuerzburg.de>
Approved by:	maintainer timeout
 2009-12-10 19:15:13 +00:00
Pav Lucistnik
c90ced8bc9 - Update to 3.6.1 
PR:		ports/141243
Submitted by:	Stas Timokhin <devel@stasyan.com>
 2009-12-08 14:58:09 +00:00
Pav Lucistnik
0eca88d377 This port has been broken for 3+ months, thus 
- Mark DEPRECATED and schedule for expiration in one month

With hat:	portmgr
 2009-12-08 14:30:09 +00:00
Koop Mast
88b729c6ff Fix build with new goffice. 2009-12-06 12:03:31 +00:00
Mark Linimon
4727575d1b Reinstate maintainer at his request. 2009-12-04 02:38:52 +00:00
Max Brazhnikov
7cb3294da7 Chase math/gsl update, 
bump PORTREVISION
 2009-12-01 20:33:45 +00:00
Wen Heping
39490db5ad - Update to 2.1.0 
- Update my mail address to FreeBSD
 2009-12-01 13:05:06 +00:00
Thierry Thomas
532f881192 - Chase relocation of net/mpich2 
- Bump PORTREVISION if needed

- Fix some portlint errors.
 2009-11-28 10:44:56 +00:00
Martin Wilke
78f963d9bd - Chase graphics/proj shlib bump 2009-11-27 23:17:38 +00:00
Sylvio Cesar Teixeira
ba072d1713 - Update my mail address to FreeBSD 
Approved by:	miwi (mentor)
 2009-11-27 22:52:30 +00:00
Beat Gaetzi
47a44eda6b - Remove obsolete gecko providers 
Approved by:	portmgr (miwi)
Exp-run by:	miwi
 2009-11-27 09:10:47 +00:00
Joe Marcus Clarke
598fc46eee Chase the goffice update. 2009-11-26 18:03:06 +00:00
Mark Linimon
89a90f22d5 Temporarily reassign ports maintained by chris@officialunix.com back to 
the pool for the duration of his upcoming move.

Requested by:	maintainer
 2009-11-26 00:36:49 +00:00
Wen Heping
afa989ca49 - Update to 1.21 2009-11-22 03:15:14 +00:00
Martin Wilke
f18e4f577d - Update to 1.0.0 
PR:		140538
Submitted by:	Troels Kofoed Jacobsen <tkjacobsen@gmail.com> (maintainer)
 2009-11-19 21:10:39 +00:00
Wen Heping
81c2ba2937 PyBrain is a modular Machine Learning Library for Python. 
It's goal is to offer flexible, easy-to-use yet still powerful
algorithms for Machine Learning Tasks and a variety of
predefined environments to test and compare your algorithms.

PyBrain is short for Python-Based Reinforcement Learning,
Artificial Intelligence and Neural Network Library. In fact,
we came up with the name first and later reverse-engineerer
this quite descriptive "Backronym".

WWW:    http://pybrain.org/
 2009-11-19 13:44:38 +00:00
Pav Lucistnik
ed9c0642a6 - Mark MAKE_JOBS_UNSAFE 
Reported by:	pointyhat
 2009-11-18 22:39:55 +00:00
Pav Lucistnik
64af9fafd3 - Update to 0.10.9 2009-11-18 14:58:11 +00:00
Martin Wilke
6984815e03 - Update to 1.1.0 
PR:		140486
Submitted by:	Ports Fury
 2009-11-12 10:52:13 +00:00
Marcel Moolenaar
5b4abe09aa Builds on ia64. 
Approved by: makc
 2009-11-11 16:12:14 +00:00
Wen Heping
16a74f6132 - Update to 1.51.01 
- Update my mail address to FreeBSD
 2009-11-11 03:05:43 +00:00
Wen Heping
cf14398266 - Update to 1.2 2009-11-07 23:48:32 +00:00
Thierry Thomas
cf80506aa8 Fix plist when NOPORTDOCS / NOPORTEXAMPLES are defined. 
Reported by:	QAT
 2009-11-07 14:36:46 +00:00
Thierry Thomas
7d3001a786 Upgrade to 3.5. 
Changelog at <http://inac.cea.fr/L_Sim/V_Sim/changelog.en.html>.
 2009-11-07 10:19:44 +00:00
Maho Nakata
53f217d98f remove unnecessary file. 
Spotted by: QAT
 2009-11-06 02:04:53 +00:00
Dmitry Marakasov
e2cc2c46a8 - Update to 0.7.2 
PR:		140281
Submitted by:	Chris Petrik <chris@officialunix.com> (maintainer)
 2009-11-05 14:57:18 +00:00
Maho Nakata
1d2230f400 Update to 2.99.2. 
Feature safe:	yes
 2009-11-05 09:54:55 +00:00
Maho Nakata
ee67784c25 Update to 2.99.1 and unbreak. 
Feature safe:	yes
 2009-11-05 09:16:08 +00:00
Rong-En Fan
dc0abbdce4 - Update to 2.9 2009-11-03 06:07:36 +00:00
Wen Heping
b6ed636d82 - Update to 1.1 
- Update my mail address to FreeBSD

Approved by:	miwi,jadawin(mentors,implicit)
 2009-11-03 03:10:13 +00:00
Martin Wilke
7de59b662b - Fix MASTER_SITES 2009-10-29 12:35:55 +00:00
Martin Wilke
e5333400f2 - Update to 1.0.3 
PR:		139772
Submitted by:	Ports Fury
 2009-10-29 11:14:27 +00:00
Rong-En Fan
feb5c39858 - Update to 1.5 2009-10-29 11:09:53 +00:00
Wen Heping
fea95026bc - Update to 2.1.9 
PR:		ports/139875
Submitted by:	Sylvio Cesar <scjamorim@bsd.com.br>
Approved by:	miwi,jadawin(mentors,implicit)
 2009-10-28 13:24:46 +00:00
Wesley Shields
6803b62cc9 - Fix plist after doxygen update. 
Noticed by:	Pav (pointyhat run)
Approved by:	maho@ (maintainer)
 2009-10-21 23:25:36 +00:00
Wen Heping
7bb094e51b - Update to 1.1.3 
- Update my mail address to FreeBSD

Approved by:	jadawin(co-mentor)
 2009-10-14 07:14:42 +00:00
Maho Nakata
6444676d85 Build fix. 
Spotted by: miwi and pav
Feature safe:	yes
 2009-10-13 23:48:01 +00:00
Joe Marcus Clarke
d735d93b31 Chase the goffice update. 2009-10-11 19:18:09 +00:00
Wen Heping
7a4a1e9a95 - Update to 11.8.7 
- Update my mail address to FreeBSD

Approved by:	miwi(mentor)
 2009-10-09 13:07:57 +00:00
Maho Nakata
df2a6060e1 adding extra rpath when linking after gcc44 migration. 
Feature safe:	yes.
 2009-10-09 02:02:09 +00:00