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1411 commits

Author SHA1 Message Date
Frederic Culot
417a7b673b - Update to 0.52 [1] 
- Capitalize names (Perl) in COMMENT

PR:		ports/176003 [1]
Submitted by:	Gea-Suan Lin <gslin@gslin.org>
 2013-02-16 14:58:51 +00:00
Ruslan Makhmatkhanov
a699fc1724 - remove empty files 2013-02-15 08:57:19 +00:00
Martin Wilke
c23a507726 - Fix build with clang 
PR:		175034
Submitted by:	Ports Fury
 2013-02-10 07:55:45 +00:00
Philippe Audeoud
9b5140c936 - Update to 1.27 
- Changelog: http://cpansearch.perl.org/src/TFRAYNER/Bio-MAGETAB-1.27/Changes
 2013-02-05 14:45:14 +00:00
Marcelo Araujo
6faa1b7774 - Update to 20121109. 
PR:		ports/175014
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
 2013-02-04 10:07:30 +00:00
Thomas Abthorpe
49626f567a - Strip header at request of original creator 
Submitted by:	trevor
With hat:	portmgr
 2013-01-27 05:55:20 +00:00
Philippe Audeoud
fad40cef87 - Update to 2.32 
- Changelog: http://cpansearch.perl.org/src/LDS/Bio-Graphics-2.32/Changes
 2013-01-24 14:36:55 +00:00
Max Brazhnikov
81c27c891a Bump PORTREVISION after DESKTOP_ENTRIES update 2013-01-23 15:00:18 +00:00
Marcelo Araujo
05e78fe84a - Update to 9.03. 
PR:		ports/172499
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
 2013-01-14 08:04:38 +00:00
Max Brazhnikov
5dd37213f5 - Update DESKTOP_ENTRIES: 
* rephrase Comment field or use port ${COMMENT} if appropriate
  * adjust Icon field according to the Desktop Entry Specification
  * update Categories field: remove deprecated category Application;
    set main category, if missing
- Remove indefinite article and/or rephrase COMMENT
- Trim Makefile header
- Other minor changes
 2013-01-07 02:07:26 +00:00
Rene Ladan
b29162eed1 Take over maintainership. 
Approved by:	pav (previous maintainer)
 2012-12-28 21:59:42 +00:00
Rene Ladan
b06829187f Use the new project URL to let the application attach coorectly to the 
project, and some cleanups:
- use optionsNG
- update commands in pkg-install.in
- improve %%AMD64%% comment handling
- convert Makefile header
- remove unused variable SIMAP_URL

Bump PORTREVISION

PR:		ports/174748
Submitted by:	myself
Approved by:	maintainer (pav@)
 2012-12-27 20:12:06 +00:00
Andrej Zverev
14d750125f Cleanup supporting perl version 5.8 and 5.10, 
lang/perl5.8 and lang/5.10 will be removed from ports tree soon.
 2012-12-17 15:39:36 +00:00
Wen Heping
b7e651129e - Update to 1.5 
Changes: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-1.5/Changes
 2012-12-16 04:22:15 +00:00
Eitan Adler
1c155b4991 Update to 5.0.4 2012-12-14 17:47:16 +00:00
Max Brazhnikov
4beaa15d30 - Mark conflict with science/openbabel 
- Trim Makefile header
 2012-12-11 14:24:51 +00:00
Max Brazhnikov
5bf9bfc399 science/openbabel: 
- Update openbabel to 2.3.2
- Switch to CMake build system
- Add PYTHON and CAIRO options
- Don't rename babel binary, mark conflict with ancient biology/babel

science/py-openbabel:
- Merge py-openbabel to openbabel

other:
- chase openbabel update
 2012-12-11 14:19:54 +00:00
Baptiste Daroussin
db767ee750 Remove hardcoded extract dependency on diablo-jdk16, directly use USE_ZIP 
instead given that jar files are just zip files, remove hardcoded do extract
target.

Reported by:	linimon, matthew
 2012-12-11 07:26:38 +00:00
Baptiste Daroussin
7c354b1913 Decommissioning java 1.5 (EOLed since October 2009): 
suppress any reference to JAVA_VERSION=	1.5+ (part2)
 2012-12-10 13:18:28 +00:00
Baptiste Daroussin
580b0c7423 Decommissioning java 1.5 (EOLed since October 2009): 
suppress any reference to USE_JAVA=	1.5+ (part1)
 2012-12-10 11:25:27 +00:00
Pawel Pekala
e8c48e4d84 - Support CC properly 
- Switch to PLIST_FILES
- Add option for GTK2 support

PR:		ports/174174
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
Feature safe:	yes
 2012-12-07 22:22:06 +00:00
Anton Berezin
c25a46dd74 Update to 2.31. 
Changes: http://search.cpan.org/dist/Bio-Graphics/Changes

Feature safe:	yes
 2012-12-07 13:49:15 +00:00
Ryan Steinmetz
33a2019014 - Reset MAINTAINER due to unrecoverable email bounce 
Reported by:	portscout
Feature safe:	yes
 2012-12-04 20:28:16 +00:00
Pietro Cerutti
a6f872f2b0 - Fix build with clang 
Feature safe:	yes
 2012-12-03 11:27:47 +00:00
Armin Pirkovitsch
2b222ce70c - Update to version 6.1.01 
- Add MAKE_JOBS_SAFE
- Convert to optionsng
- Trim Makefile header

PR:           ports/171971
Submitted by: KATO Tsuguru <tkato432 _at_ yahoo.com>
Approved by:  beat (mentor)
Feature safe: yes
 2012-12-01 00:00:43 +00:00
Armin Pirkovitsch
f50819ce60 - Update to version 5.0.2 
- Add MAKE_JOBS_UNSAFE
- Convert to optionsng

PR:           ports/171970
Submitted by: KATO Tsuguru <tkato432 _at_ yahoo.com>
Approved by:  beat (mentor)
Feature safe: yes
 2012-11-30 23:51:49 +00:00
Baptiste Daroussin
18210032c9 2012-11-26 benchmarks/gsbench: No more public distfiles 
2012-11-26 benchmarks/xengine: No more public distfiles
2012-11-26 biology/belvu: No more public distfiles
2012-11-26 multimedia/kaffeine-mozilla: No more public distfiles
2012-11-26 www/gnustep-ticker: Abandonware
2012-11-26 net/tryst-examples: Abandonware
2012-11-26 net/tryst: Abandonware

Feature safe:	yes
 2012-11-28 09:05:54 +00:00
Wen Heping
2a3cdaf773 - Update to version 2.0 
- Update pkg-descr

PR:		172497
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>

Feature safe:	yes
 2012-11-15 07:04:29 +00:00
Pawel Pekala
ff942cf270 - Update to version 4.4.0 
- Mark MAKE_JOBS_SAFE
- Make dependency on print/pdflib optional
- Switch to PLIST_FILES

While here:
- Add missing deps
- Add desktop entry

PR:		ports/172498
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
Feature safe:	yes
 2012-10-30 20:31:14 +00:00
Pawel Pekala
987bb3de6b Update to version 2.12.4 
PR:		ports/172218
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
Feature safe:	yes
 2012-10-30 17:53:39 +00:00
Wen Heping
cb1e050008 - Reset maintainer to perl@ 
Feature safe:	yes
 2012-10-30 02:03:29 +00:00
Wen Heping
68d3450c97 - Update to 1.4 
Changes: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-1.4/Changes
- Trim Makefile headers

Feature safe:	yes
 2012-10-30 01:59:37 +00:00
Wen Heping
a2845e428a - Trim Makefile headers 
- Reset maintainer to perl@

Feature safe:	yes
 2012-10-30 01:47:15 +00:00
Baptiste Daroussin
da6c3af5fc Deprecate a bunch of ports that are either abandonware and/or for which no more 
public distfiles are available, or for which are -devel version with a more
recent stable version for long

Feature safe:	yes
 2012-10-26 14:57:50 +00:00
Baptiste Daroussin
3db2e90933 2012-10-20 chinese/wangttf: No more public distfiles 
2012-10-20 chinese/stardict-dict-zh_TW: No more public distfiles
2012-10-20 chinese/stardict-dict-zh_CN: No more public distfiles
2012-10-20 chinese/mingunittf: No more public distfiles
2012-10-20 chinese/dfsongsd: No more public distfiles
2012-10-20 biology/dna-qc: No more public distfiles

Feature safe:	yes
 2012-10-25 23:05:56 +00:00
Wen Heping
5c73d4b55d - Update to 1.26 
Changes: http://cpansearch.perl.org/src/TFRAYNER/Bio-MAGETAB-1.26/Changes

Feature safe:	yes
 2012-10-25 00:18:32 +00:00
Dirk Meyer
851945b1eb - cleanup comments 
Feature safe: yes
 2012-10-13 13:39:56 +00:00
Wen Heping
27c347dbdd - Update to 1.5.3 
- Trim Makefile headers
 2012-10-08 03:17:02 +00:00
Wen Heping
baa9b66158 - Take maintainership 2012-10-01 14:55:55 +00:00
Thomas Abthorpe
d46aafc64e - Reassign to the heap at maintainer's request 2012-10-01 14:45:16 +00:00
Max Brazhnikov
ecd280d820 Add new ports biology/plink [1] and biology/plinkseq [2]: 
PLINK is a free, open-source whole genome association analysis toolset.
PLINK/SEQ is an open-source C/C++ library for working with human
genetic variation data.

PR:		ports/171918 [1]
PR:		ports/171922 [2]
Submitted by:	Jason Bacon <jwbacon at tds.net>
 2012-09-27 09:59:25 +00:00
Ruslan Makhmatkhanov
9f67b5e7f1 - update to 1.60 
while here:
- convert Makefile header into two-line format
- update COMMENT (indefinite article removed)
- change USE_PYTHON to just -2.7
- remove py-reportlab from BUILD_DEPENDS and kick PYTHON_SITELIBDIR from there
- tab -> space change in pkg-descr:WWW

PR:		171115
Submitted by:	wen
Approved by:	Mauricio Herrera Cuadra <mauricio at arareko dot net> (maintainer)
 2012-09-25 08:06:42 +00:00
Alexey Dokuchaev
bd4927ffa4 Mea culpa, s/Whom/Created by/ 2012-09-23 15:40:58 +00:00
Alexey Dokuchaev
e6bc1ecae5 - Adjust "Created by" tag to include more complete submitter's information 
- Mute MKDIRs, remove trailing dot from RESTRICTED, drop leading indefinite
  article from COMMENT where appropriate
 2012-09-23 15:38:58 +00:00
Thomas Abthorpe
f48ef480ea - Reassign to the heap at maintainer's request 2012-09-22 15:34:16 +00:00
Baptiste Daroussin
6b968aca1e Deprecated a bunch a ports with nor more public distfiles (thanks ehaupt's 
distilator
 2012-09-20 22:26:26 +00:00
Mark Linimon
3fd15ea0ae Mark as broken on sparc64: depends on thread-local storage, which is not 
available on sparc64.

Hat:		portmgr
 2012-09-08 08:30:39 +00:00
Baptiste Daroussin
0ff48b2c81 Fix build with clang 2012-08-24 10:18:51 +00:00
Michael Scheidell
1217f4c6f2 - Submitter is now maintainer 
PR:		ports/169920
Approved by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
 2012-08-07 13:54:02 +00:00
Michael Scheidell
2c946497ba - Update to version 6.903 
PR:		ports/169920
Submitted by:	"Reed A. Cartwright" <cartwright@asu.edu>
Approved by:	maintainer (timeout, 21 days)
 2012-08-07 12:26:39 +00:00