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14001 commits

Author SHA1 Message Date
Yuri Victorovich
28a16c27f6 math/nanoflann: Not broken 
Erroneously labeled as BROKEN/unfetchable in rev.522132,
which may have been made during a period of intermittent connectivity problems.
 2020-01-06 03:07:39 +00:00
Stephen Montgomery-Smith
f671c2f220 - Add option dependencies communications and mechanics. 
- Update to 20200106.
 2020-01-06 01:43:10 +00:00
Stephen Montgomery-Smith
535a489b18 - Resurrect port math/octave-forge-mechanics. 
- Bump portrevision.
 2020-01-06 01:39:20 +00:00
Stephen Montgomery-Smith
a02b639055 - Resurrect ports math/octave-forge-communications. 
- Update to 1.2.2.
 2020-01-06 01:29:47 +00:00
Antoine Brodin
dc9af20b3c Mark a few ports broken (unfetchable) 2020-01-05 10:26:04 +00:00
Yuri Victorovich
6a4357ba8d math/barvinok: Update 0.41.2 -> 0.41.3 
Reported by:	portscout
 2020-01-05 08:45:18 +00:00
Yuri Victorovich
691e53aea0 math/py-spot: Update 2.8.4 -> 2.8.5 
Reported by:	portscout
 2020-01-05 08:31:41 +00:00
Yuri Victorovich
9aa3542072 math/spot: Update 2.8.4 -> 2.8.5 
Reported by:	portscout
 2020-01-05 08:31:04 +00:00
Yuri Victorovich
31d89ed2e8 math/zegrapher: Update 3.0.2 -> 3.1 
Reported by:	portscout
 2020-01-05 08:19:45 +00:00
Matthias Andree
2e26d3323d graphics/ilmbase, graphics/openexr: upgrade to upstream v2.4.0 
graphics/gstreamer1-plugins-openexr: switch from C++98 to C++11 to
match new OpenEXR headers and unbreak compilation.

Bump PORTREVISION of all ports depending directly on either, based
on assessing INDEX-12 (bump_portrevision.pl -l (shallow) used).

Release Notes:
https://github.com/AcademySoftwareFoundation/openexr/releases/tag/v2.4.0

The update was deliberately deferred until after 2020Q1, and should
not be MFH'd back to it.
 2020-01-05 02:17:32 +00:00
Piotr Kubaj
21819b5e53 math/clrng: fix build on powerpc64 elfv2 
clang doesn't have ppu_intrinsics.h.

PR:		243036
Approved by:	jmd (maintainer)
 2020-01-04 20:14:11 +00:00
Yuri Victorovich
621dee1e14 math/cppad: Update 20200000.0 -> 20200000.1 2020-01-04 18:29:31 +00:00
Wen Heping
8717dae047 - Update to 1.5 2020-01-04 15:42:05 +00:00
Yuri Victorovich
4c187b3ffd math/hpipm: Update 0.1.0-80 -> 0.1.1 
Reported by:	portscout
 2020-01-04 10:15:47 +00:00
Wen Heping
f53af99381 - Update to 1.3.6 2020-01-04 09:39:04 +00:00
Yuri Victorovich
c16fc77352 math/geogram: Update 1.7.2 -> 1.7.3 
Reported by:	portscout
 2020-01-04 05:57:01 +00:00
Yuri Victorovich
c3fc89e0b2 math/dbcsr: Update 1.1.0 -> 2.0.1 
Reported by:	portscout
 2020-01-04 05:43:23 +00:00
Yuri Victorovich
0608076b6c math/cppad: Update 20190200.5 -> 20200000.0 
Reported by:	portscout
 2020-01-04 05:38:22 +00:00
Yuri Victorovich
acd7fb9dbd math/py-primme: Update 3.0 -> 3.0.1 
Reported by:	portscout
 2020-01-03 07:26:29 +00:00
Yuri Victorovich
9a47c9d351 math/primme: Update 3.0 -> 3.0.1 
Reported by:	portscout
 2020-01-03 07:25:54 +00:00
Devin Teske
fb5cc75890 [New Port] math/R-cran-alabama: Constrained Nonlinear Optimization 
Augmented Lagrangian Adaptive Barrier Minimization Algorithm (ALABAMA) for
optimizing smooth nonlinear objective functions in R with constraints.

WWW: https://cran.r-project.org/web/packages/alabama/

Reviewed by:	mat, imp (previous revision)
Differential Revision:	https://reviews.freebsd.org/D22675
 2020-01-03 00:56:48 +00:00
Tobias C. Berner
a457096f2e math/wxmaxima: Update to 20.01.1 
PR:		243037
Submitted by:	salvadore (maintainer)
 2020-01-02 20:03:35 +00:00
Devin Teske
c0e7acf2f2 [New Port] math/R-cran-ADGofTest: Anderson-Darling GoF test 
Anderson-Darling GoF test in R with p-value calculation based on Marsaglia's
2004 paper "Evaluating the Anderson-Darling Distribution."

WWW: https://cran.r-project.org/web/packages/ADGofTest/

Reviewed by:	imp (mentor), mat (mentor)
Approved by:	imp (mentor), mat (mentor)
Differential Revision:	https://reviews.freebsd.org/D22673
 2020-01-02 17:58:20 +00:00
Baptiste Daroussin
8e7bfc56cf Update to 0.9.1 2020-01-02 08:24:37 +00:00
Piotr Kubaj
5f582b73ab math/gretl: fix build on GCC architectures 
Since the last upgrade, gretl requires C11:
../lib/src/bhhh_max.c:37: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'Lval'

Fix this by adding USES=compiler:c11 and replacing OPENMP_USES=compiler:openmp with OPENMP_USE=GCC=yes. This sets the correct CC.

PR:		243027
Approved by:	yuri (maintainer)
 2020-01-01 22:50:04 +00:00
Tobias C. Berner
812e2c1c99 math/wxmaxima: Update to 19.12.4 
PR:		242928
Submitted by:	salvadore (maintainer)
 2020-01-01 22:07:26 +00:00
Sunpoet Po-Chuan Hsieh
320f27e7a7 Update to 1.1.26 
Changes:	https://github.com/dmuellner/fastcluster/releases
		https://github.com/dmuellner/fastcluster/blob/master/NEWS.txt
 2020-01-01 16:30:48 +00:00
Rene Ladan
12f974ad28 Resurrect ports depending on devel/openmp. 
These ports will transition transparantly to openmp from base once
FreeBSD 12.0 reaches end-of-life.

Reported by:	jbeich [1] [2]

[1] https://lists.freebsd.org/pipermail/svn-ports-head/2019-May/210482.html
[2] https://lists.freebsd.org/pipermail/svn-ports-head/2019-December/229648.html
 2020-01-01 11:46:08 +00:00
Rene Ladan
f2aea6bcb5 Undeprecate math/blaze and science/chrono per https://lists.freebsd.org/pipermail/svn-ports-head/2019-May/210482.html 2020-01-01 11:30:49 +00:00
Rene Ladan
87d7b8db4a Remove expired ports: 
2019-12-31 accessibility/linux-c6-atk: Superseded by CentOS 7
2019-12-31 audio/exaile-devel: this port is older than audio/exaile
2019-12-31 audio/linux-c6-alsa-lib: Superseded by CentOS 7
2019-12-31 audio/linux-c6-alsa-plugins-oss: Superseded by CentOS 7
2019-12-31 audio/linux-c6-alsa-plugins-pulseaudio: Superseded by CentOS 7
2019-12-31 audio/linux-c6-alsa-utils: Superseded by CentOS 7
2019-12-31 audio/linux-c6-flac: Superseded by CentOS 7
2019-12-31 audio/linux-c6-libaudiofile: Superseded by CentOS 7
2019-12-31 audio/linux-c6-libogg: Superseded by CentOS 7
2019-12-31 audio/linux-c6-libsndfile: Superseded by CentOS 7
2019-12-31 audio/linux-c6-libvorbis: Superseded by CentOS 7
2019-12-31 audio/linux-c6-mikmod: Superseded by CentOS 7
2019-12-31 audio/linux-c6-nas-libs: Superseded by CentOS 7
2019-12-31 audio/linux-c6-openal-soft: Superseded by CentOS 7
2019-12-31 audio/linux-c6-pulseaudio-libs: Superseded by CentOS 7
2019-12-31 audio/linux-c6-pulseaudio-utils: Superseded by CentOS 7
2019-12-31 audio/linux-c6-sdl_mixer: Superseded by CentOS 7
2019-12-31 databases/linux-c6-sqlite3: Superseded by CentOS 7
2019-12-31 databases/linux-oracle-instantclient-sqlplus: Depends on deprecated Centos 6 framework
2019-12-31 devel/linux-c6-dbus-glib: Superseded by CentOS 7
2019-12-31 devel/linux-c6-dbus-libs: Superseded by CentOS 7
2019-12-31 devel/linux-c6-devtools: Superseded by CentOS 7
2019-12-31 devel/linux-c6-elfutils-libelf: Superseded by CentOS 7
2019-12-31 devel/linux-c6-icu: Superseded by CentOS 7
2019-12-31 devel/linux-c6-libgfortran: Superseded by CentOS 7
2019-12-31 devel/linux-c6-libglade2: Superseded by CentOS 7
2019-12-31 devel/linux-c6-libpciaccess: Superseded by CentOS 7
2019-12-31 devel/linux-c6-libsigc++20: Superseded by CentOS 7
2019-12-31 devel/linux-c6-libsoup: Superseded by CentOS 7
2019-12-31 devel/linux-c6-libthai: Superseded by CentOS 7
2019-12-31 devel/linux-c6-libunwind: Superseded by CentOS 7
2019-12-31 devel/linux-c6-nspr: Superseded by CentOS 7
2019-12-31 devel/linux-c6-qt47: Superseded by CentOS 7
2019-12-31 devel/linux-c6-sdl12: Superseded by CentOS 7
2019-12-31 dns/linux-c6-libasyncns: Superseded by CentOS 7
2019-12-31 emulators/linux_base-c6: Superseded by CentOS 7
2019-12-31 ftp/linux-c6-curl: Superseded by CentOS 7
2019-12-31 graphics/cptutils: depends on expired textproc/xml2
2019-12-31 graphics/linux-c6-cairo: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-dri: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-gdk-pixbuf2: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-glx-utils: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-jasper: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-jpeg: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-png: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-sdl_image: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-sdl_ttf: Superseded by CentOS 7
2019-12-31 graphics/linux-c6-tiff: Superseded by CentOS 7
2019-12-31 lang/linux-c6-tcl85: Superseded by CentOS 7
2019-12-31 math/blazeiterative: Depends on expiring devel/openmp
2019-12-31 multimedia/linux-c6-libtheora: Superseded by CentOS 7
2019-12-31 multimedia/linux-c6-libv4l: Superseded by CentOS 7
2019-12-31 net/linux-c6-avahi-libs: Superseded by CentOS 7
2019-12-31 net/linux-c6-openldap: Superseded by CentOS 7
2019-12-31 net/linux-c6-tcp_wrappers-libs: Superseded by CentOS 7
2019-12-31 net/py-soappy: Please consider using net/py-zeep as upstream development is stalled  and recommends using another stalled library stud
2019-12-31 print/linux-c6-cups-libs: Superseded by CentOS 7
2019-12-31 science/openmx: Depends on expiring devel/openmp
2019-12-31 science/py-PyFR: Depends on expiring devel/openmp
2019-12-31 science/py-phono3py: Depends on expiring devel/openmp
2019-12-31 security/linux-c6-audit-libs: Superseded by CentOS 7
2019-12-31 security/linux-c6-cyrus-sasl2: Superseded by CentOS 7
2019-12-31 security/linux-c6-gnutls: Superseded by CentOS 7
2019-12-31 security/linux-c6-libgcrypt: Superseded by CentOS 7
2019-12-31 security/linux-c6-libgpg-error: Superseded by CentOS 7
2019-12-31 security/linux-c6-libssh2: Superseded by CentOS 7
2019-12-31 security/linux-c6-libtasn1: Superseded by CentOS 7
2019-12-31 security/linux-c6-nss: Superseded by CentOS 7
2019-12-31 security/linux-c6-openssl: Superseded by CentOS 7
2019-12-31 security/linux-c6-pam: Superseded by CentOS 7
2019-12-31 security/openssl: OpenSSL 1.0.2 is End-of-Life 2019-12-31 at which  time this port will update to 1.1.1 branch
2019-12-31 sysutils/eventlog: No longer supported by Balabit
2019-12-31 sysutils/linux-c6-lttng-ust: Superseded by CentOS 7
2019-12-31 sysutils/linux-c6-userspace-rcu: Superseded by CentOS 7
2019-12-31 sysutils/mkdesktop: defunct, will be deleted soon
2019-12-31 sysutils/syslog-ng311: No longer supported by Balabit
2019-12-31 sysutils/syslog-ng315: No longer supported by Balabit
2019-12-31 sysutils/syslog-ng317: No longer supported by Balabit
2019-12-31 sysutils/syslog-ng318: No longer supported by Balabit
2019-12-31 sysutils/syslog-ng319: No longer supported by Balabit
2019-12-31 textproc/linux-c6-aspell: Superseded by CentOS 7
2019-12-31 textproc/linux-c6-expat: Superseded by CentOS 7
2019-12-31 textproc/linux-c6-libxml2: Superseded by CentOS 7
2019-10-16 textproc/xml2: Unfetchable, unmaintained
2019-12-31 www/linux-c6-qt47-webkit: Superseded by CentOS 7
2019-12-31 x11/linux-c6-pixman: Superseded by CentOS 7
2019-12-31 x11/linux-c6-xorg-libs: Superseded by CentOS 7
2019-12-31 x11-fonts/linux-c6-fontconfig: Superseded by CentOS 7
2019-12-31 x11-toolkits/linux-c6-gtk2: Superseded by CentOS 7
2019-12-31 x11-toolkits/linux-c6-openmotif: Superseded by CentOS 7
2019-12-31 x11-toolkits/linux-c6-pango: Superseded by CentOS 7
2019-12-31 x11-toolkits/linux-c6-qt47-x11: Superseded by CentOS 7
2019-12-31 x11-toolkits/linux-c6-tk85: Superseded by CentOS 7
 2019-12-31 17:00:29 +00:00
Rene Ladan
515028feb5 Chase devel/openmp expiration: 
- Sync expiration date of math/blaze with that of devel/openmp
- add science/chrono
 2019-12-31 15:43:20 +00:00
Koichiro Iwao
dc936c406b multiple ports: Update MAINTAINER 
as he got FreeBSD.org account.

PR:		243002
Submitted by:	salvadore
 2019-12-31 13:02:42 +00:00
Yuri Victorovich
4d34bde3ae math/py-arviz: Update 0.5.1 -> 0.6.1 
Reported by:	portscout
 2019-12-31 03:38:02 +00:00
Yuri Victorovich
ae5a03efc1 math/ensmallen: Update 2.10.5 -> 2.11.1 
Reported by:	portscout
 2019-12-31 02:16:08 +00:00
Antoine Brodin
fbeb2a4fcd Unbreak bulk -a 2019-12-29 17:47:31 +00:00
Sunpoet Po-Chuan Hsieh
439a749df4 Update to 3.2.4 
Changes:	https://bitbucket.org/rpy2/rpy2/src/default/NEWS
		https://github.com/rpy2/rpy2/blob/master/NEWS
 2019-12-29 17:33:43 +00:00
Hiroki Sato
e23bb909e7 - Update to 1.5.1. 
- Add -fPIC.
 2019-12-29 15:26:37 +00:00
Sunpoet Po-Chuan Hsieh
c79626c06e Update to 0.15.4 
Changes:	https://github.com/openai/gym/blob/master/README.rst#whats-new
 2019-12-29 12:55:29 +00:00
Sunpoet Po-Chuan Hsieh
6272f4bbab Add py-hdbscan 0.8.24 
HDBSCAN - Hierarchical Density-Based Spatial Clustering of Applications with
Noise. Performs DBSCAN over varying epsilon values and integrates the result to
find a clustering that gives the best stability over epsilon. This allows
HDBSCAN to find clusters of varying densities (unlike DBSCAN), and be more
robust to parameter selection.

In practice this means that HDBSCAN returns a good clustering straight away with
little or no parameter tuning -- and the primary parameter, minimum cluster
size, is intuitive and easy to select.

HDBSCAN is ideal for exploratory data analysis; it's a fast and robust algorithm
that you can trust to return meaningful clusters (if there are any).

WWW: https://github.com/scikit-learn-contrib/hdbscan
 2019-12-29 12:46:11 +00:00
Jason E. Hale
e7c2832946 math/qalculate: Update to 3.6.0 2019-12-28 20:36:12 +00:00
Jason E. Hale
b216c218bc math/libqalculate: Update to 3.6.0 2019-12-28 20:35:22 +00:00
Wen Heping
af1bc03413 - Update to 0.6.26 2019-12-28 13:05:05 +00:00
Sunpoet Po-Chuan Hsieh
bb1988ae5b Update to 3.2.3 
Changes:	https://bitbucket.org/rpy2/rpy2/src/default/NEWS
		https://github.com/rpy2/rpy2/blob/master/NEWS
 2019-12-28 07:31:15 +00:00
Sunpoet Po-Chuan Hsieh
29cecbe723 Update to 2.1 
- Change MASTER_SITES to CHEESESHOP
- Add NO_ARCH
- Update pkg-descr
- Update WWW
- Take maintainership

Changes:	https://github.com/plastex/plastex/releases
 2019-12-28 07:31:10 +00:00
Sunpoet Po-Chuan Hsieh
681c01c0f3 Unbreak this port after r519944 
- Change RUN_DEPENDS from py-pyglet to py-pyglet12
- Bump PORTREVISION for dependency change
 2019-12-28 07:31:05 +00:00
Yuri Victorovich
7a434e065e math/primesieve: Update 7.4-26 -> 7.5 
Reported by:	portscout
 2019-12-28 07:08:38 +00:00
Marius Strobl
d1e482d908 Add and use a shared INFO description. I have patches to add that knob to 
a bunch of additional ports.
 2019-12-27 19:24:56 +00:00
Baptiste Daroussin
c5fe34636c Update jasper to 2.0.16 
This is needed to be able to update gegl to latest version.
Bump revision of all consumer as the ABI is not 100% backward compatible.
Provide a patch for graphics/devil to properly build with latest jasper.
While here add a missing USES=xorg to graphics/devil
 2019-12-27 13:43:00 +00:00
Baptiste Daroussin
ea2d15f126 update to 1.5.2 2019-12-27 13:31:41 +00:00
Baptiste Daroussin
9aedbdbd82 Update to 1.2.46 
While here replace a patch by BINARY_ALIAS and a build depends on coreutils:
while previous version used to call only once install with the GNU extension -D
in the version this has spreaded a bit more. It is easier then to use directly ginstall
from coreutils than patching makefiles all over the place.
 2019-12-27 09:15:43 +00:00