clang 13 complains about duplicate loop unrolling pragmas for clang and
CGG. According to [1], clang supports #pragma GCC unroll with identical
semantics to #pragma clang loop unroll, so remove instances of #pragma
clang loop unroll and #pragma unroll when they appear with #pragma GCC
unroll for the same loop.
[1]
https://clang.llvm.org/docs/AttributeReference.html#pragma-unroll-pragma-nounroll
Sponsored by: The FreeBSD Foundation
Update the CONFLICTS definitions of ports in the following categories:
- accessibility
- archivers
- audio
- benchmarks
- biology
- cad
- chinese
- comms
- converters
An attempt has been made to use generic conflicts patterns that do not
have to be updated whenever a new version of a conflicting port is
added to the ports system.
There is a misunderstanding that the port being built/installed has to
be omitted from the conflicts pattern. This is not true - the port
being built is implicitly non-conflicting due to logic in bsd.port.mk.
Approved by: portmgr (implicit)
DNA Features Viewer is a Python library to visualize DNA features, e.g.
from GenBank or Gff files.
DNA Features Viewer can plot sequence maps linearly or circularly, with
or without nucleotide sequence and amino-acid sequences. The plotter
automatically produces clear plots even for sequences with many
overlapping features and long labels. The library plays well with
Matplotlib and Biopython, and the figures can be saved in different
formats (PNG, JPEG, SVG, PDF), e.g. for report generation or LIMS
interfaces.
SIP:
As mentioned in the update from sip to sip5, this is a transitional version
to remove what is deprecated in sip4.
Sip6 completely removes the deprecated parts.
Unfortunately, some ports — mostly cura things — can not use sip6, so we
reintroduce sip4.
PyQt:
At the same time, we took the opportunity to simplify PyQT and propose only one
package as for devel/pyside2. */py-qt5-* have been merged — excepted chart,
networkauth and webengine — into devel/py-qt5-pyqt.
This allows us to be in adequacy with the packages that the author of these
libraries proposes, namely:
PyQt - devel/py-qt5-pyqt
PyQt-Charts - x11-toolkits/py-qt5-chart
PyQt-NetworkAuth – net/py-qt5-networkauth
PyQt-WebEngine – www/py-qt5-webengine
SIP – devel/py-sip
py-sip - devel/py-qt5-sip
PyQt-builder - devel/py-qtbuilder
Qscintilla - devel/py-qt5-qscintilla2
Reviewed by: diizzy, kde
Tested by: kai, rhurlin, arrowd, madpilot
Approved by: makc, tcberner, kde
Differential Revision: https://reviews.freebsd.org/D33237
Exp-run by: antoine
do-install is removed in favor of project's install target,
Also update 3 other ports to build with cpu_features.
PR: 261252
Approved by: skreuzer@ (maintainer)
Adds the sample, qsegout and tsegout options. It also enables the use of
UDB databases with uchime_ref.
Changes: https://github.com/torognes/vsearch/releases
Reported by: portscout
There have been lots of missing CONFLICTS_INSTALL entries, either
because conflicting ports were added without updating existing ports,
due to name changes of generated packages, due to mis-understanding
the format and semantics of the conflicts entries, or just due to
typoes in package names.
This patch is the result of a comparison of all files contained in
the official packages with each other. This comparison was based on
packages built with default options and may therefore have missed
further conflicts with optionally installed files.
Where possible, version numbers in conflicts entries have been
generalized, some times taking advantage of the fact that a port
cannot conflict with itself (due to logic in bsd.port.mk that
supresses the pattern match result in that case).
A few ports that set the conflicts variables depending on complex
conditions (e.g. port options), have been left unmodified, despite
probably containing outdated package names.
These changes should only affect the installation of locally built
ports, not the package building with poudriere. They should give an
early indication of the install conflict in cases where currently
the pkg command aborts an installation when it detects that an
existing file would be overwritten,
Approved by: portmgr (implicit)
FreeBSD port: Add support for aarch64 and powerpc64 using simde
Not yet supported upstream
Several upstream bug fixes and minor enhancements since 2.1
Changes: https://github.com/marbl/canu/tags
