Commit graph

12041 commits

Author SHA1 Message Date
Yuri Victorovich
c20e582b28 math/py-PySCIPOpt: Update 1.4.3 -> 1.4.4
Reported by:	portscout
2018-04-17 08:10:30 +00:00
Yuri Victorovich
eb0b973ac5 New port: math/py-pyipopt: Use ipopt (an optimization tool) via python 2018-04-17 08:07:38 +00:00
Jason W. Bacon
dce4f8f9c7 math/intervaltree: Remove invalid category 2018-04-16 19:18:04 +00:00
Jason W. Bacon
8b88ccd559 math/intervaltree: Minimal C++ interval tree implementation
Approved by:    jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D15105
2018-04-16 18:55:55 +00:00
Jason W. Bacon
29f4e93c87 math/multichoose: Generate multiset combinations (n multichoose k)
Approved by:    jrm (mentor)
Differential Revision:  https://reviews.freebsd.org/D15104
2018-04-16 18:31:42 +00:00
Yuri Victorovich
d709177109 New port: Coin-or Branch and Cut: mixed integer programming solver 2018-04-16 07:55:42 +00:00
Yuri Victorovich
c03b1a0bb1 New port: math/cgl: Collection of cut generators for COIN-OR packages that use cuts 2018-04-16 07:22:08 +00:00
Yuri Victorovich
5532e65810 math/clp: Unbreak on 12
Added patches to prevent breakage due to reinterpret_cast<SomeType*>(NULL).
See the upstream bug report: https://github.com/coin-or/Clp/issues/7

Approved by:	portmgr (port compliance, infrastructure)
2018-04-16 07:07:51 +00:00
TAKATSU Tomonari
10b1f0f12d - Update to 8.3 2018-04-16 04:10:56 +00:00
Danilo G. Baio
51a57b1c00 archivers/laszip: Update to 3.2.2
Project has moved to Github.

While here:
  Remove old tweaks that aren't necessary anymore.
  Update LICENSE.

Changes:	https://raw.githubusercontent.com/LASzip/LASzip/3.2.2/ChangeLog

Bump PORTREVISION of dependent port (math/pdal) due shlib change.

PR:		227501
Submitted by:	lbartoletti@tuxfamily.org
Approved by:	Rainer Hurling <rhurlin@gwdg.de> (maintainer)
2018-04-16 00:11:58 +00:00
Jan Beich
1f842fbdbb math/ceres-solver: unbreak OPENMP=off after r465555
$ make config
│ │──────────────────────────── Threading support ───────────────────────────│ │
│ │+( ) OPENMP       Parallel processing support via OpenMP                  │ │
│ │+(*) TBB          Intel threading building blocks                         │ │
====> You cannot select multiple options from the THREADS radio
=====> Only one of these must be defined: OPENMP TBB
Config is invalid. Re-edit? [Y/n] y
2018-04-15 23:57:29 +00:00
Yuri Victorovich
4fe531dc49 New port: math/py-PySCIPOpt: Python interface and modeling environment for SCIP 2018-04-15 08:12:21 +00:00
Yuri Victorovich
18a0bbd546 math/SCIP: Update 5.0.0 -> 5.0.1
Also added CONFLICTS_BUILD=Ipopt (reported upstream as a bug)

Reported by:	portscout
2018-04-15 07:54:28 +00:00
Yuri Victorovich
85d9ed0b62 math/py-Pyomo: Update 5.4.3 -> 5.5.0
Reported by:	portscout
2018-04-15 06:44:06 +00:00
TAKATSU Tomonari
771cd60357 - Add new port: math/R-cran-uroot
Seasonal unit roots and seasonal stability tests. P-values based
  on response surface regressions are available for both tests.
  P-values based on bootstrap are available for seasonal unit root
  tests. A parallel implementation of the bootstrap method requires
  a CUDA capable GPU with compute capability >= 3.0, otherwise a
  debugging version fully coded in R is used.

  WWW: https://cran.r-project.org/web/packages/uroot/
2018-04-15 04:24:19 +00:00
Eric Turgeon
7d2d36aed6 Updating MATE ports to and patch for MATE 1.20
Reviewed by:	kwm
Approved by:	bapt (mentor)
2018-04-13 21:16:56 +00:00
Sunpoet Po-Chuan Hsieh
2de6ace070 Update to 4.03
Changes:	http://search.cpan.org/dist/Math-MPFR/CHANGES
2018-04-13 20:48:32 +00:00
Yuri Victorovich
b1623c30ac math/xtensor: Update 0.15.6 -> 0.15.9 2018-04-12 09:22:08 +00:00
TAKATSU Tomonari
36824967cc - Update to 0.7-7 2018-04-12 05:33:30 +00:00
TAKATSU Tomonari
a337215bcb - Update to 1.1-17 2018-04-12 02:02:08 +00:00
TAKATSU Tomonari
c630188cc7 - Update to 1.6.1 2018-04-11 09:12:50 +00:00
TAKATSU Tomonari
0abca9a4bf - Add new port: math/R-cran-SQUAREM
Algorithms for accelerating the convergence of slow, monotone
  sequences from smooth, contraction mapping such as the EM algorithm.
  It can be used to accelerate any smooth, linearly convergent
  acceleration scheme. A tutorial style introduction to this package
  is available in a vignette on the CRAN download page or, when the
  package is loaded in an R session, with vignette("SQUAREM").

  WWW: https://cran.r-project.org/web/packages/SQUAREM/
2018-04-11 08:48:37 +00:00
TAKATSU Tomonari
d3f3f61052 - Update to 0.1-15 2018-04-11 08:02:45 +00:00
Mathieu Arnold
aa8828b1f7 Use USE_GITHUB correctly.
Sponsored by:	Absolight
2018-04-11 07:40:47 +00:00
TAKATSU Tomonari
9f15be91e4 - Update to 1.3.2 2018-04-11 07:37:16 +00:00
TAKATSU Tomonari
2cab66bb35 - Add new port: math/R-cran-geometry
Makes the qhull library (www.qhull.org) available in R, in a similar
  manner as in Octave and MATLAB. Qhull computes convex hulls, Delaunay
  triangulations, halfspace intersections about a point, Voronoi
  diagrams, furthest-site Delaunay triangulations, and furthest-site
  Voronoi diagrams. It runs in 2-d, 3-d, 4-d, and higher dimensions.
  It implements the Quickhull algorithm for computing the convex hull.
  Qhull does not support constrained Delaunay triangulations, or mesh
  generation of non-convex objects, but the package does include some
  R functions that allow for this. Currently the package only gives
  access to Delaunay triangulation and convex hull computation.

  WWW: https://cran.r-project.org/web/packages/geometry/
2018-04-11 05:53:33 +00:00
TAKATSU Tomonari
0a93e19a97 - Add new port: math/R-cran-magic
A collection of efficient, vectorized algorithms for the creation
  and investigation of magic squares and hypercubes, including a
  variety of functions for the manipulation and analysis of arbitrarily
  dimensioned arrays. The package includes methods for creating normal
  magic squares of any order greater than 2. The ultimate intention
  is for the package to be a computerized embodiment all magic square
  knowledge, including direct numerical verification of properties
  of magic squares (such as recent results on the determinant of
  odd-ordered semimagic squares). Some antimagic functionality is
  included. The package also serves as a rebuttal to the often-heard
  comment "I thought R was just for statistics".

  WWW: https://cran.r-project.org/web/packages/magic/
2018-04-11 05:25:21 +00:00
Yuri Victorovich
7dcc43c2e2 math/libmesh: Update 1.2.1 -> 1.3.0
Port changes:
* Disable static libs
* Remove the defunct option SFCURVES

Reported by:	portscout
2018-04-10 09:09:02 +00:00
Stephen Montgomery-Smith
81b7c86e7c - Add optional dependency math/octave-forge-dicom.
- Update to 20180409.
2018-04-10 02:00:11 +00:00
Stephen Montgomery-Smith
99f021d1ad - Resurrect math/octave-forge-dicom.
- Update to 0.2.1.
2018-04-10 01:57:22 +00:00
Tobias C. Berner
2415bff291 New port: KDE Applications math/
* math/analitza
* math/cantor
* math/kalgebra
* math/kbruch
* math/kcalc
* math/kig
* math/kmplot
* math/rocs

This is the current version of KDE Applications <foo>.
Note that users of KDE SC4 should stick with <foo>-kde4.
2018-04-09 18:13:24 +00:00
Danilo Egea Gondolfo
6919f1bde0 math/cloog
- Update to 0.19.0
 - Use github
 - Add ac_cv_prog_TEXI2DVI to avoid building docs for now

devel/isl
 - Update to 0.19

- Bump PORTREVISION of all dependencies
2018-04-08 19:05:36 +00:00
Yuri Victorovich
9c1f2dc0d2 math/py-pyodesys: Unbreak, py-scipy-0.19.1 isn't committed yet 2018-04-08 05:35:11 +00:00
Jan Beich
ae60358af5 devel/icu: update to 61.1
Changes:	http://site.icu-project.org/download/61
ABI:		https://abi-laboratory.pro/tracker/timeline/icu4c/
PR:		227042
Exp-run by:	antoine
MFH:		2018Q2 (required by Firefox 61)
2018-04-06 15:53:16 +00:00
Yuri Victorovich
d4770c7f52 math/mppp: Update 0.9-33 -> 0.10
Reported by:	upstream author
2018-04-06 06:44:21 +00:00
Jason E. Hale
d507710565 - Update to 0.7.4
- Desktop file is now included in source
2018-04-05 21:54:49 +00:00
Wen Heping
5caa730831 - Update to 2.17
Changes: http://cpansearch.perl.org/src/SHLOMIF/Math-GMP-2.17/Changes
2018-04-05 15:21:30 +00:00
Max Brazhnikov
b13b99a093 math/qtiplot:
- Add patch from Debian to fix issue with muparser scripting
- Fix runtime problem with Python scripting support
- Bump PORTREVISION
- Take maintainership
2018-04-05 14:26:33 +00:00
Antoine Brodin
b83b47532b Mark BROKEN: missing build depends
===>   msieve-1.51_1 depends on file: /usr/local/lib/libecm.a - not found

Reported by:	pkg-fallout
2018-04-05 07:25:14 +00:00
Yuri Victorovich
96ce1eaf7c math/py-pyodesys: Update 0.11.9 -> 0.11.10
Reported by:	portscout
2018-04-05 05:53:35 +00:00
Jose Alonso Cardenas Marquez
5ab881a5d9 - Migrate Mk/bsd.fpc.mk to Mk/Uses/fpc.mk
- Convert all fpc-based ports to USES=fpc

PR:             227210
Reviewed by:    portmgr
Approved by:    portmgr
Exp-run by:     antoine
Differential Revision:  https://reviews.freebsd.org/D14617
2018-04-05 04:52:36 +00:00
Dmitry Marakasov
3f792c9f3c - Fix LICENSE
- Add LICENSE_FILE
- Remove unneeded regression-test target (the port supports 'make test')

Approved by:	portmgr blanket
2018-04-04 08:33:30 +00:00
Yuri Victorovich
0e126fd8b6 New port: math/antic: Algebraic Number Theory In C 2018-04-03 23:14:57 +00:00
Sunpoet Po-Chuan Hsieh
0ba0602fe0 Update to 4.02
Changes:	http://search.cpan.org/dist/Math-MPFR/CHANGES
2018-04-03 09:52:39 +00:00
Rene Ladan
8ba5d6cafa Remove expired ports:
2018-03-31 math/abacus: Unmaintained and has a broken shared library
2018-03-31 audio/muse: Unmaintained upstream, crashes at runtime
2018-03-31 net/paris-traceroute: Legacy paris-traceroute is not supported anymore. Use net/scamper instead
2018-04-01 net-im/cjc: Depends on expired net-im/py-xmpp
2018-02-28 net-im/py-pyxmpp: Obsoleted in favor of PyXMPP2
2018-04-03 09:36:28 +00:00
Frederic Culot
4212427dd3 - Update to 7.0.4
Changes:	https://gforge.inria.fr/forum/forum.php?forum_id=11510
PR:		227106
Submitted by:	yuri@
2018-04-03 08:18:06 +00:00
TAKATSU Tomonari
74ea057a95 - Update to 0.5-1 2018-04-02 08:59:43 +00:00
TAKATSU Tomonari
c6c7d91410 - Update to 0.7-4 2018-04-02 08:32:21 +00:00
Yuri Victorovich
11e479104d math/py-keras: Update 2.1.4 -> 2.1.5
Port changes:
* Change to DISTVERSION
* Minor comment change
* Add PYNUMPY to RUN_DEPENDS
* Sort RUN_DEPENDS
* Remove USE_PYTHON=concurrent (not needed)
* Group USExx
* Replace WWW with the https version

PR:		226451
Submitted by:	Neel Chauhan <neel@neelc.org> (maintainer)
2018-04-02 08:03:29 +00:00
TAKATSU Tomonari
80a876b524 - Add new port: math/R-cran-spData
Diverse spatial datasets for demonstrating, benchmarking and teaching
  spatial data analysis. It includes R data of class sf (defined by
  the package 'sf'), Spatial ('sp'), and nb ('spdep'). Unlike other
  spatial data packages such as 'rnaturalearth' and 'maps', it also
  contains data stored in a range of file formats including GeoJSON,
  ESRI Shapefile and GeoPackage. Some of the datasets are designed
  to illustrate specific analysis techniques. cycle_hire and
  cycle_hire_osm, for example, is designed to illustrate point pattern
  analysis techniques.

  WWW: https://cran.r-project.org/web/packages/spData/
2018-04-02 07:36:05 +00:00