Commit graph

4798 commits

Author SHA1 Message Date
Yuri Victorovich
69d6541bb1 science/metaphysicl: Update 0.5.0 -> 0.5.2
Reported by:	portscout
2019-08-02 20:20:29 +00:00
Sunpoet Po-Chuan Hsieh
d41dd4068c Cosmetic change 2019-08-02 19:28:57 +00:00
Yuri Victorovich
a921e1d567 Hook up science/openkim-models to build. 2019-08-02 18:44:20 +00:00
Yuri Victorovich
143237e61c New port: science/openkim-models: Open Knowledgebase of Interatomic Models
Requested by:	Ryan S. Elliott <relliott@umn.edu>
2019-08-02 17:26:27 +00:00
Yuri Victorovich
1a8b8e1d5c science/jmol: Update 14.29.46 -> 14.29.49
Reported by:	portscout
2019-08-02 06:29:26 +00:00
Piotr Kubaj
4af00fce4c science/libkml: fix build with GCC architectures
Typedef redefinitions were introduced in C11.

Approved by:	mentors (implicit approval)
2019-08-01 21:24:41 +00:00
Yuri Victorovich
e0dd0c0068 science/wwplot: Update 0.0.4 -> 0.0.6
Reported by:	portscout
2019-08-01 02:27:28 +00:00
Sunpoet Po-Chuan Hsieh
4f3e0d828f Bump PORTREVISION for devel/protobuf shlib change 2019-07-31 16:38:52 +00:00
Yuri Victorovich
4f537b340b science/py-qcelemental: Update 0.4.2 -> 0.5.0
Reported by:	portscout
2019-07-31 06:26:37 +00:00
Yuri Victorovich
1d2be50ce1 science/smoldyn: Update 2.60 -> 2.61
Reported by:	portscout
2019-07-31 06:15:12 +00:00
Yuri Victorovich
7db2ddef5b science/qmcpack: Update 3.7.0 -> 3.8.0
Reported by:	portscout
2019-07-31 06:09:39 +00:00
Yuri Victorovich
82c32da496 science/simgrid: Update 3.22.2.20190515 -> 3.23.2
Reported by:	repology
2019-07-30 03:31:30 +00:00
Yuri Victorovich
d834026e4d science/kim-api: Update 2.1.1 -> 2.1.2 2019-07-30 02:54:41 +00:00
Antoine Brodin
8d0c8c5c44 Unbreak bulk 2019-07-28 18:52:00 +00:00
Yuri Victorovich
6c0577c732 science/py-ase: It is python 3.5+ now.
Reported by:	fallout
2019-07-28 18:17:27 +00:00
Tobias C. Berner
a430427055 science/libgeodecomp: fix build with cmake 3.15 2019-07-28 15:29:33 +00:00
Yuri Victorovich
da9df2a409 science/py-gsd: Update 1.6.1 -> 1.7.0
Reported by:	repology
2019-07-28 03:24:30 +00:00
Yuri Victorovich
a194765fbd science/py-GPy: Update 1.9.6 -> 1.9.8
Reported by:	repology
2019-07-28 03:22:14 +00:00
Piotr Kubaj
f87e4c2ecb science/ncnn: fix build with GCC-based architectures
This adds USES=compiler:c11 because of:
/usr/local/poudriere/ports/default/science/ncnn/work/ncnn-20190611-40-gd3be711/src/layer/convolutiondepthwise.cpp:450: error: expected '#pragma omp' clause before 'collapse'

It's detected that our base compiler supports OpenMP and new OpenMP features are then used.

That's why we need new GCC. USES=compiler:openmp would work but it uses a base compiler. Since this port builds also without OpenMP, no further modifications are needed.

Approved by:	mentors (implicit approval)
2019-07-27 22:08:21 +00:00
Yuri Victorovich
ed1ef1be19 science/yoda: Update 1.7.4 -> 1.7.7
Reported by:	repology
2019-07-27 18:07:04 +00:00
Sunpoet Po-Chuan Hsieh
5edb3f8484 Update to 3.47
- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/docs/changes.txt
2019-07-27 11:53:22 +00:00
Yuri Victorovich
20a74aedf8 science/kim-api: Update 2.1.0 -> 2.1.1 2019-07-27 06:58:02 +00:00
Gerald Pfeifer
ea8c8ec7da Bump PORTREVISION for ports depending on the canonical version of GCC
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
   c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.

PR:		238330
2019-07-26 20:46:53 +00:00
Yuri Victorovich
db091009ba science/lammps: Update patch_5Jun2019 -> patch_19Jul2019
PR fixing folder locations is backported.

Reported by:	GitHub release notification
2019-07-26 18:01:05 +00:00
Yuri Victorovich
9e9b750538 science/py-ase: Update 3.17.0 -> 3.18.0 2019-07-20 23:20:19 +00:00
Yuri Victorovich
1a2f33a253 science/ncnn: Fix grammar and spelling in pkg-descr 2019-07-20 22:13:56 +00:00
Yuri Victorovich
b244f3c977 New port: science/ncnn: High-performance neural network inference framework 2019-07-20 21:57:30 +00:00
Yuri Victorovich
69e6e7aa5a science/agrum: Update 0.15.0 -> 0.15.2 2019-07-20 20:56:16 +00:00
Yuri Victorovich
82b9326ffe New port: science/wwplot: Plotting tool for experimental physics classes 2019-07-20 16:51:13 +00:00
Piotr Kubaj
d20914ecc3 science/paraview: fix build on GCC architectures
Needs newer GCC than what is in base:
CMake Error at VTK/CMake/vtkCompilerChecks.cmake:4 (message):
  GCC 4.8 or later is required.

Approved by:	mentors (implicit approval)
2019-07-19 20:34:28 +00:00
Yuri Victorovich
747697260d New port: science/kim-api: Framework for reliable, reproducible, portable molecular simulations 2019-07-19 17:51:08 +00:00
Sunpoet Po-Chuan Hsieh
9b37e33325 Update to 2.13.0
Changes:	https://confluence.ecmwf.int/display/ECC/Latest+news
2019-07-19 17:02:43 +00:00
Piotr Kubaj
362b75e38d science/kalzium: fix build on GCC architectures
Needs C++11 compiler:
  The compiler feature "cxx_decltype" is not known to CXX compiler

Approved by:	mentors (implicit approval)
2019-07-19 09:35:46 +00:00
Piotr Kubaj
436840879c science/py-veusz: fix build on GCC architectures
This port uses C++11:
cc1plus: error: unrecognized command line option "-std=c++11"

Approved by:	mentors (implicit approval)
2019-07-18 11:26:50 +00:00
Danilo Egea Gondolfo
7f6316b9d8 - Update math/armadillo to 9.600.4
Reported by:	Nina Santi
2019-07-17 20:00:42 +00:00
Yuri Victorovich
98ca4ad5a5 science/tinker: Update 8.6.1 -> 8.7.1
Reported by:	portscout
2019-07-14 00:34:53 +00:00
Tobias C. Berner
61ee61d083 science/massxpert: prepare for Qt 5.13
PR:		238782
2019-07-13 12:50:04 +00:00
Mark Linimon
4603257363 Simplify architecture tests for 64-bit. Listing each ARCH is fragile; e.g.,
misses some 64-bit mips variants.

While here, further collapse tests for multiple variants of arm, mips, powerpc.

Approved by:	portmgr (tier-2 blanket)
2019-07-12 15:41:37 +00:00
Tobias C. Berner
37e8575738 KDE Applications: update to 19.04.3
July 11, 2019.
Today KDE released the third stability update for KDE Applications 19.04. This
release contains only bugfixes and translation updates, providing a safe and
pleasant update for everyone.

Over sixty recorded bugfixes include improvements to Kontact, Ark, Cantor, JuK,
K3b, Kdenlive, KTouch, Okular, Umbrello, among others.

Improvements include:

  *  Konqueror and Kontact no longer crash on exit with QtWebEngine 5.13
  *  Cutting groups with compositions no longer crashes the Kdenlive video editor
  *  The Python importer in Umbrello UML designer now handles parameters with default arguments

Changelog:
	https://kde.org/announcements/fulllog_applications-aether.php?version=19.04.3
2019-07-12 05:32:09 +00:00
Mark Linimon
7bfae932f7 Prepare for powerpc-on-clang by deleting hard-coded tests for libstdc++.so
as a stand-in for "are we running on gcc".

For people already testing powerpc on clang, it is possible that they
already have both compilers in base.  Thus, the assumption that "gcc is
in base" (e.g.  libstdc++.so exists) always means "force use of GCC" is
already broken.  It will be for everyone on -CURRENT once the switch is
made.

While here, standardize on compiler:c++11-lang instead of -lib (they are
equivalent these days), pet portlint, and do some other cleanup.

Approved by:	portmgr (tier-2 blanket)
2019-07-12 02:25:07 +00:00
Kai Knoblich
a3706632aa New port: science/py-ruffus
The Ruffus module is a lightweight way to add support for running
computational pipelines.

Computational pipelines are often conceptually quite simple, especially if
we breakdown the process into simple stages, or separate tasks.

Each stage or task in a computational pipeline is represented by a Python
function. Each Python function can be called in parallel to run multiple
jobs.

Ruffus was originally designed for use in bioinformatics to analyse multiple
genome data sets.

WWW: http://www.ruffus.org.uk
2019-07-11 16:50:44 +00:00
Sunpoet Po-Chuan Hsieh
1db36ba705 Update to 0.9.2
Changes:	https://github.com/ecmwf/eccodes-python/blob/master/CHANGELOG.rst
2019-07-10 17:00:42 +00:00
Sunpoet Po-Chuan Hsieh
5912a04893 Update to 1.2.2
Changes:	https://github.com/scipy/scipy/releases
PR:		238965
Exp-run by:	antoine
2019-07-07 19:14:54 +00:00
TAKATSU Tomonari
92e50689c1 - Update to 1.0.5 2019-07-07 13:57:22 +00:00
TAKATSU Tomonari
830251e179 - Update to 1.7-2 2019-07-07 12:51:23 +00:00
TAKATSU Tomonari
337325103e - Update to 2.37 2019-07-07 12:34:59 +00:00
TAKATSU Tomonari
58ebf300c4 - Update to 2.2-8
- Fix LICENSE section
2019-07-07 12:32:58 +00:00
Yuri Victorovich
0e630246b2 science/py-spglib: Update 1.12.2 -> 1.13.0
Reported by:	portscout
2019-07-06 03:01:12 +00:00
Sunpoet Po-Chuan Hsieh
70ffc9c0fd Update devel/protobuf to 3.8.0
- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/protocolbuffers/protobuf/releases
PR:		238808
Exp-run by:	antoine
2019-07-05 19:08:49 +00:00
Stephen Montgomery-Smith
5d14d686f0 - Update to 3.2.0. 2019-07-03 23:55:47 +00:00
Tobias Kortkamp
f8bce16669 science/dftbplus: Unbreak build with GCC 9
/usr/local/bin/ld: coulomb.o: in function `__coulomb_MOD_invrstress._omp_fn.0':
coulomb.f90:(.text+0x42): undefined reference to `GOMP_loop_maybe_nonmonotonic_runtime_start'
/usr/local/bin/ld: coulomb.f90:(.text+0x176): undefined reference to `GOMP_loop_maybe_nonmonotonic_runtime_next'
/usr/local/bin/ld: coulomb.o: in function `__coulomb_MOD_invrstress._omp_fn.1':
coulomb.f90:(.text+0xfbc): undefined reference to `GOMP_loop_maybe_nonmonotonic_runtime_start'
/usr/local/bin/ld: coulomb.f90:(.text+0x1172): undefined reference to `GOMP_loop_maybe_nonmonotonic_runtime_next'
[...]

PR:		238666
Submitted by:	jbeich
Reported by:	antoine (via exp-run in PR 238330)
Approved by:	yuri (maintainer timeout, 2 weeks)
2019-07-03 10:05:47 +00:00
Piotr Kubaj
d61e14362a science/PETSc: fix typo
s/CONFIGURE_ARG_/CONFIGURE_ARGS_/
2019-07-01 19:52:04 +00:00
Piotr Kubaj
991f4493fa science/PETSc: fix build with non-x86
Only i386 and amd64 have SSE, don't use it on other platforms.

It probably also builds on ARM platforms with this patch, but someone would have to test it.

PR:		238631
Approved by:	yuri (maintainer timeout), mat (mentor)
Differential Revision:	https://reviews.freebsd.org/D20821
2019-07-01 19:47:39 +00:00
Yuri Victorovich
c517ce256e science/h5z-zfp: Update 0.9.0 -> 1.0.1
Reported by:	portscout
2019-06-30 08:34:58 +00:00
Piotr Kubaj
f5f826f007 science/py-MDAnalysis: fix build
Add USES=compiler:c++11-lang to fix:
cc1plus: error: unrecognized command line option "-std=c++11"

Approved by:	mentors (implicit approval)
2019-06-29 10:28:48 +00:00
Tobias Kortkamp
3726f94254 Convert all Go ports to USES=go
This allows for port testing with lang/go-devel via GO_PORT, setting
up the Go build environment in a single place, and is step one in
simplifying Go ports that often define too complicated do-build
targets themselves.

USES=go gains new arguments 'run' to add lang/go to RUN_DEPENDS and
'no_targets' for ports with composite builds that call 'go' themselves
and do not need the do-build/do-install targets of USES=go.

PR:		238849
Submitted by:	dg@syrec.org (also D20745)
Reviewed by:	mat, tobik
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D20746
2019-06-29 03:51:13 +00:00
Yuri Victorovich
6fd3cb6c9a science/nest: Update 2.16.0 -> 2.18.0
Reported by:	portscout
2019-06-28 09:10:18 +00:00
Mathieu Arnold
08bc95f4c0 Remove dupplicate port.
Pointy hat:	yuri
2019-06-28 06:57:09 +00:00
Yuri Victorovich
0d19872a61 science/py-phonopy: Update 2.1.3 -> 2.1.4
Reported by:	portscout
2019-06-28 05:04:05 +00:00
Yuri Victorovich
8bc4dee0ff science/atompaw: Update 4.1.0.5 -> 4.1.0.6
Reported by:	portscout
2019-06-28 04:52:35 +00:00
Yuri Victorovich
8e5eb0b6f8 New port: science/molden: Program for molecular and electronic structure visualization 2019-06-28 03:51:26 +00:00
Sunpoet Po-Chuan Hsieh
b98ac213c1 Cosmetic change 2019-06-27 20:03:54 +00:00
Sunpoet Po-Chuan Hsieh
1b91103fe7 Update graphics/libgeotiff to 1.5.1
- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/OSGeo/libgeotiff/blob/master/libgeotiff/NEWS
		https://lists.osgeo.org/pipermail/geotiff/2019-March/000861.html
		https://lists.osgeo.org/pipermail/geotiff/2019-March/000862.html
2019-06-27 19:57:33 +00:00
Alexey Dokuchaev
3186e08e7c Update Guile to version 2.2.5, modern stable version, and fix dependent
ports to build against it.  Most changes are rather minor and mechanical
except for the devel/gdb (obtained via their bugtracker [1], courtesy of
Doug Evans).  One port (science/meep) I had to mark BROKEN after fixing
it proved to be very tedious and actually unreliable.  It is very old,
there are newer versions available so it should be fixed by updating.

One port (devel/libruin) had revealed a bug in the new Guile code (an
auxiliary script, really) that had to be worked-round; reference to the
problematic upstream commit is provided in the patch.

PR:		229613
Exp-run by:	antoine

[1] https://sourceware.org/bugzilla/show_bug.cgi?id=21104#c8
2019-06-27 09:02:56 +00:00
Wen Heping
3d23ba68ab - Update to 6.1.0 and fix some ports
- Add missing DEPENDS
- Add TEST_TARGET
- Take maintainership

PR:		237932, 238795
Submitted by:	wenheping2000@hotmail.com,rhurlin@gwdg.de
Approved by:	maintainer(timeout, > 30 days), portmgr@(implicit, fix build)
Exp-run by:	antoine@
Thanks to:	antoine@, sunpoet@, rhurlin@gwdg.de
2019-06-27 03:37:10 +00:00
Sunpoet Po-Chuan Hsieh
4f1d0ee1ec Update to 1.5.3
Changes:	https://github.com/Try2Code/cdo-bindings/blob/master/README.md#changelog
		https://github.com/Try2Code/cdo-bindings/commits/master
2019-06-25 20:52:05 +00:00
Tobias C. Berner
4196590fa5 KDE Applications: complete dependency lists
This has been on the TODO list for forever...

PR:		238764
Reported by:	yuri
2019-06-23 15:39:32 +00:00
Sunpoet Po-Chuan Hsieh
d12f07dc24 Update to 0.113
Changes:	https://metacpan.org/changes/distribution/Geo-WebService-Elevation-USGS
2019-06-22 21:50:07 +00:00
Yuri Victorovich
5204c782ce science/qbox: Update 1.67.2 -> 1.67.4 2019-06-20 22:06:56 +00:00
Guido Falsi
ad1ecbc81b - Simplify XFCE MASTER_SITES usage
- Update XFCE Master sites list

Submitted by:		olivierd
Reviewed by:		mat
Approved by:		portmgr (mat)
Differential Revision:	https://reviews.freebsd.org/D8416
2019-06-19 16:14:27 +00:00
Yuri Victorovich
e77c7663ca science/py-qcengine: Update 0.6.4 -> 0.7.1
Reported by:	portscout
2019-06-19 08:15:53 +00:00
Yuri Victorovich
4de4161b08 science/py-qcelemental: Update 0.4.1 -> 0.4.2
Reported by:	portscout
2019-06-19 08:14:24 +00:00
Jason W. Bacon
6be8fa3bb2 science/afni: Upgrade to 19.1.20
Upstreamed FreeBSD patches, other minor fixes and enhancements

Reported by:    portscout, Rick Reynolds (NIH)
2019-06-18 19:00:55 +00:00
Mark Linimon
4b97875495 Add compiler:c++11-lang to USES to fix the following on GCC-based systems:
/usr/local/lib/libgraphite2.so.3: undefined reference to `__cxa_throw_bad_array_new_length@CXXABI_1.3.8'

Approved by:	portmgr (tier-2 blanket)
2019-06-17 11:39:30 +00:00
Antoine Brodin
e19903f0ae Clean up LIB_DEPENDS 2019-06-16 16:05:28 +00:00
Yuri Victorovich
1d0afd2ae4 science/gromacs: Update 2019.2 -> 2019.3
Reported by:	portscout
2019-06-15 19:35:27 +00:00
Yuri Victorovich
d90385ba3c science/qbox: Update 1.67.1 -> 1.67.2
Reported by:	portscout
2019-06-13 09:04:51 +00:00
Pietro Cerutti
ac5da5db90 science/jstrack: remove meaningless 85+ from USES tk 2019-06-12 16:16:10 +00:00
Sunpoet Po-Chuan Hsieh
7352189e45 Update to 1.9.7
Changes:	https://code.mpimet.mpg.de/news/445
2019-06-11 20:19:26 +00:00
Sunpoet Po-Chuan Hsieh
46e9786119 Update to 4.1.2
Changes:	https://bitbucket.org/levitsky/pyteomics/src/default/CHANGELOG
		https://pyteomics.readthedocs.io/en/latest/changelog.html
2019-06-09 16:52:36 +00:00
Yuri Victorovich
9e7fd269f9 science/lammps: Add the PORTSCOUT=ignore line 2019-06-09 04:22:37 +00:00
Yuri Victorovich
de69d47ef7 New port: science/smoldyn: Biochemical simulator for molecular diffusion, surface interactions 2019-06-09 03:26:15 +00:00
Piotr Kubaj
4842639ea0 science/nifticlib: fix build
Add MAKE_JOBS_UNSAFE=yes to fix build:
nifti_stats.c:2:22: error: nifticdf.h: No such file or directory
nifti_stats.c: In function 'main':
nifti_stats.c:30: error: 'inam' undeclared (first use in this function)
nifti_stats.c:30: error: (Each undeclared identifier is reported only once
nifti_stats.c:30: error: for each function it appears in.)

Approved by:	mat (mentor)
Differential Revision:	https://reviews.freebsd.org/D20500
2019-06-08 19:24:18 +00:00
Jason W. Bacon
97b12f97b4 science/afni: Upgrade to 19.1.18
Minor bugfixes/enhancements
2019-06-08 19:14:18 +00:00
Yuri Victorovich
100912bdfb science/nwchem: Update 6.8.1.20190509 -> 6.8.1.20190606 2019-06-08 07:54:52 +00:00
Sunpoet Po-Chuan Hsieh
7100b05254 Update to 0.9.1
Changes:	https://github.com/ecmwf/eccodes-python/blob/master/CHANGELOG.rst
2019-06-07 23:04:38 +00:00
Yuri Victorovich
7f98aa57a0 science/lammps: Update 31May2019 -> 5Jun2019
Approved by:	portscout
2019-06-07 06:08:02 +00:00
Yuri Victorovich
0585d1c554 science/jmol: Update 14.29.42 -> 14.29.46
Reported by:	portscout
2019-06-07 05:59:51 +00:00
Tobias C. Berner
f240baeb83 Update KDE Applications to 19.04.2
https://kde.org/announcements/announce-applications-19.04.2.php
2019-06-07 04:08:25 +00:00
TAKATSU Tomonari
2885da0f8f - Update to 1.7-1 2019-06-02 07:44:51 +00:00
Stephen Montgomery-Smith
6685c898dd - Update devel/gdcm to 3.0.0.
- Bump portrevision of dependent ports.
2019-06-01 21:59:13 +00:00
Jason W. Bacon
144c4feb7d science/afni: Upgrade to 19.1.14
Minor bug fixes and enhancements, some FreeBSD patches upstreamed
2019-06-01 12:59:52 +00:00
Yuri Victorovich
0e443ebe39 science/py-qcelemental: Update 0.4.0 -> 0.4.1
Reported by:	portscout
2019-06-01 06:01:52 +00:00
Yuri Victorovich
f474e5deed science/lammps: Update 15May2019 -> 31May2019
Reported by:	GitHub release notification
2019-05-31 19:32:00 +00:00
Antoine Brodin
1f01284469 Chase devel/openmp expiration 2019-05-27 20:55:56 +00:00
Yuri Victorovich
7af6138dd6 science/py-rmsd: Fix license
PR:		238134
Reported by:	tobik
2019-05-26 18:17:15 +00:00
Yuri Victorovich
62e00b1db5 New port: science/opensph: Library and graphical tools for running SPH and N-body simulations 2019-05-26 04:08:09 +00:00
Sunpoet Po-Chuan Hsieh
218bf57515 Update to 4.1.1
Changes:	https://pyteomics.readthedocs.io/en/latest/changelog.html
2019-05-25 22:03:25 +00:00
Sunpoet Po-Chuan Hsieh
70d0371995 Update to 2.12.5
Changes:	https://confluence.ecmwf.int/display/ECC/Latest+news
2019-05-25 22:02:44 +00:00
Sunpoet Po-Chuan Hsieh
b4a96957bc Add py-eccodes-python 0.9.0
Python 3 interface to encode and decode GRIB and BUFR files via the ECMWF
ecCodes library.

Features:
- reads and writes GRIB 1 and 2 files,
- reads and writes BUFR 3 and 4 files,
- supports all modern versions of Python 3.7, 3.6, 3.5 and PyPy3,
- works on most Linux distributions and MacOS, the ecCodes C-library is the only
  system dependency,
- PyPI package with no install time build (binds with CFFI ABI level, in-line
  mode),
- supports writing the index of a GRIB file to disk, to save a full-file scan on
  open.

WWW: https://github.com/ecmwf/eccodes-python
2019-05-25 22:02:27 +00:00
Yuri Victorovich
e0b5281b58 science/py-GPy: Fix build by explicitly setting the path to libomp.so in xx_DEPENDS lines
Reported by:	fallout
2019-05-23 21:21:49 +00:00
Jason W. Bacon
73eb992926 science/afni: Upgrade to 19.1.10
Rapid response from upstream on reported issue.  Additional patches to be
upstreamed in next release.
2019-05-22 12:44:17 +00:00
Piotr Kubaj
9b1f148f09 science/wxmacmolplt: fix build with GCC-based architectures
Add USES=compiler:c++11-lang to fix linking:
checking for wxWidgets libraries... not found

Approved by:	mentors (implicit approval)
2019-05-20 20:09:32 +00:00
Jason W. Bacon
ade7919150 science/afni: Upgrade to 19.1.08
Switch from personal dist snapshots to Github releases
Improve staging procedure to preserve results of build phase
Temporarily use bundled GLw pending fix of libglw port
2019-05-20 19:35:57 +00:00
Thierry Thomas
b3a0da2461 Switch to Python 3.6 and upgrade to v5.3.3.
Note: Code_Saturne does not run with Qt5 in combination with Python 2.7.
See <https://github.com/code-saturne/code_saturne/issues/44>.
2019-05-19 19:22:45 +00:00
Yuri Victorovich
a60337fb4e science/py-phono3py: Fix build on 12/13 (broken due to missing libgomp.so); Add USES=blaslapack:openblas
libgomp.so was found in gcc8, which this ports doesn't explicitly depend on,
and openmp wasn't installed but the build was failing later on 12 due to the
lack of libgomp.so.

Solution: Move openmp dependency from LIB_DEPENDS to BUILD_DEPENDS/RUN_DEPENDS.

Reported by:	Gleb Popov <6yearold@gmail.com> (USES=blaslapack:openblas)
2019-05-19 16:48:08 +00:00
Yuri Victorovich
749b46c96b science/abinit: Fix libomp.so in LDFLAGS (this also might fix the breakage on 13)
Reported by:	fallout
2019-05-19 03:01:48 +00:00
Yuri Victorovich
d95813f563 science/dftbplus: Fix libomp.so in LDFLAGS (this also might fix the breakage on 13) 2019-05-19 02:47:01 +00:00
Yuri Victorovich
771d3b45a5 science/py-phono3py: Unbreak on 13: /usr/lib/libomp.so conflicting with the 'openmp' package has been added to 13-CURRENT
Reported by:	fallout
2019-05-19 02:40:34 +00:00
Yuri Victorovich
0a3ad2a5f4 science/gabedit: Unbreak on 13: /usr/lib/libomp.so conflicting with the 'openmp' package has been added to 13-CURRENT
Reported by:	fallout
2019-05-19 02:38:14 +00:00
Yuri Victorovich
34c0e7d61e science/py-GPy: Unbreak on 13: /usr/lib/libomp.so conflicting with the 'openmp' package has been added to 13-CURRENT
Reported by:	fallout
2019-05-19 02:35:46 +00:00
Yuri Victorovich
1837418d06 science/openmx: Unbreak on 13: /usr/lib/libomp.so conflicting with the 'openmp' package has been added to 13-CURRENT
LIB_DEPENDS=libomp.so:devel/openmp now causes this problem in multiple ports.

Reported by:	fallout
2019-05-19 02:24:59 +00:00
Yuri Victorovich
c17f9e6a78 science/esys-particle: Broken on 13-CURRENT
Reported by:	fallout
2019-05-18 22:58:19 +00:00
Yuri Victorovich
7d0e3eaf2a science/chrono: Broken on i386
Reported by:	fallout
2019-05-18 22:28:29 +00:00
Yuri Victorovich
d7cca70b67 science/nest: Broken on i386
Reported by:	fallout
2019-05-18 22:12:49 +00:00
Yuri Victorovich
72a5a25bc9 science/py-paramz: Update 0.9.4 -> 0.9.5
Reported by:	portscout
2019-05-18 15:56:47 +00:00
Yuri Victorovich
b399938765 New port: science/libvdwxc: Van der Waals density functional (DFT) library 2019-05-18 05:40:31 +00:00
Yuri Victorovich
e9a104fd10 New port: science/simgrid: Simulator of the behavior of large-scale distributed systems 2019-05-16 16:00:15 +00:00
Yuri Victorovich
2c32727d61 science/lammps: Update patch_30Apr2019 -> patch_15May2019
Reported by:	github notification
2019-05-15 04:29:09 +00:00
Yuri Victorovich
9307245c42 science/py-qcelemental: Update 0.3.3 -> 0.4.0
Reported by:	portscout
2019-05-14 17:25:54 +00:00
Wen Heping
6d5d69c53d - Update to 0.20.3
PR:		237759
Submitted by:	wenheping2000@hotmail.com(myself)
Approved by:	demon@(maintainer)
2019-05-14 02:17:08 +00:00
Yuri Victorovich
4b21a54932 science/hypre: Update 2.15.1 -> 2.16.0
New github repository is pointed to from their website now.
2019-05-13 07:57:57 +00:00
Yuri Victorovich
a3fee0ff6d science/nest: Update 2.14.0-2100 -> 2.16.0
Reported by:	portscout
2019-05-12 08:24:10 +00:00
Mathieu Arnold
5944e9ef33 Cleanup cython dependency. 2019-05-11 21:10:31 +00:00
Yuri Victorovich
81a5212217 science/nest: PYTHON_USE=python=cython instead of PYTHON_BUILD_DEPENDS
Reported by:	mat
2019-05-11 21:01:54 +00:00
Yuri Victorovich
85cb72892b science/coot: Fix build with GCC-based architectures
PR:		237842
Submitted by:	pkubaj
2019-05-11 20:40:33 +00:00
Piotr Kubaj
1f4241358e science/clipper: add USES=compiler:c++11-lang
This is needed to build science/coot.

Approved by:	mentors (implicit approval)
2019-05-11 20:30:19 +00:00
Yuri Victorovich
5e8b580aa9 New port: science/nest: Simulator for spiking neural network models 2019-05-11 20:29:56 +00:00
Yuri Victorovich
e721b925ab science/avogadrolibs: Update 1.92.0 -> 1.92.1 2019-05-11 18:10:31 +00:00
Antoine Brodin
ef73356c19 Those ports link against llvm's libomp.so 2019-05-11 09:36:21 +00:00
Yuri Victorovich
20a2b516de science/opsin: Update 3.0.20190208 -> 3.0.20190223 2019-05-11 06:00:09 +00:00
Yuri Victorovich
25a7016bf4 science/nwchem: Update 6.8.1.20190412 -> 6.8.1.20190509 2019-05-11 03:41:13 +00:00
Yuri Victorovich
3b5fce1f01 science/agrum: Update 0.14.3 -> 0.15.0
Reported by:	portscout
2019-05-10 06:15:21 +00:00
Yuri Victorovich
e0083390a0 science/py-gpaw: Update 1.5.1 -> 1.5.2
Reported by:	portscout
2019-05-09 20:12:51 +00:00
Piotr Kubaj
3edb29c651 science/luscus: fix build with GCC-based architectures
Add USES=compiler:c++11-lang to fix linking:
/usr/local/lib/libgraphite2.so.3: undefined reference to `__cxa_throw_bad_array_new_length@CXXABI_1.3.8'

Approved by:	mentors (implicit approval)
2019-05-09 19:59:20 +00:00
Tobias C. Berner
d27fcc13c5 Update KDE Applications to 19.04.1
Changelog:
	https://kde.org/announcements/fulllog_applications-aether.php?version=19.04.1
2019-05-09 18:18:04 +00:00
Jan Beich
3b1a1bcee4 devel/openmp: phase out
- Expire after the last version without /usr/lib/libomp.so
- Drop SOVERSION for seamless transition (i.e., avoid conditionals)

PR:		236907
Approved by:	bapt (maintainer)
Differential Revision:	https://reviews.freebsd.org/D19767
2019-05-08 16:05:53 +00:00
Yuri Victorovich
bab17abceb science/py-phonopy: Update 2.0.0 -> 2.1.3 2019-05-08 06:35:50 +00:00
Yuri Victorovich
2084646704 science/py-phonopy: 1.13.2.107 -> 2.0.0 2019-05-08 06:11:16 +00:00
Yuri Victorovich
68197f1a2f science/py-pymatgen: Update 2019.1.24 -> 2019.2.28 2019-05-08 05:49:01 +00:00
Yuri Victorovich
60e2c08fee science/chrono: Update 2.0.0-9070 -> 4.0.0-89 2019-05-05 01:42:48 +00:00
Tobias Kortkamp
9b8c35db19 science/ALPSCore: Fix OPENMPI2 spelling after r500723 2019-05-04 11:02:15 +00:00
Yuri Victorovich
f6ccdc8eb7 science/harminv: Add -fPIC
PR:		234105
Submitted by:	devel@stasyan.com (maintainer)
2019-05-04 02:08:19 +00:00
Mark Linimon
922dee671e These ports now build on aarch64.
Where necessary, pet portlint.

Approved by:	portmgr
Obtained from:	aarch64 TRYBROKEN run
2019-05-03 21:06:51 +00:00
Mathieu Arnold
b139bbf73f Fix the a ports that were broken but did not know it.
Differential Revision:	https://reviews.freebsd.org/D20140
2019-05-03 13:58:33 +00:00
Adam Weinberger
a388e76374 compiler.mk is unhappy if CC/CXX is defined before bsd.port.pre.mk
Reported by:	Peter Jeremy
Submitted by:	mat
2019-05-03 12:30:40 +00:00
Yuri Victorovich
5ee82ae77a science/apbs: Fix license 2019-05-03 06:15:44 +00:00
Yuri Victorovich
1535bb293d New port: science/apbs: Electrostatic and solvation properties for complex molecules 2019-05-03 06:14:57 +00:00
Yuri Victorovich
b3f8e63dfc science/metaphysicl: Update 0.3.3 -> 0.5.0
Reported by:	portscout
2019-05-03 03:46:01 +00:00
Yuri Victorovich
d8b1947608 science/jmol: Update 14.29.40 -> 14.29.42
Reported by:	portscout
2019-05-02 07:59:18 +00:00
Yuri Victorovich
7346f80c67 New port: science/pagmo2: Platform to perform parallel computations of optimization tasks 2019-05-01 07:16:57 +00:00
Yuri Victorovich
35ebe83873 science/lammps: Update patch_29Mar2019 -> patch_30Apr2019
Reported by:	github release notification
2019-05-01 05:40:18 +00:00
Sunpoet Po-Chuan Hsieh
b136119d69 Update to 4.7.0
- Update LICENSE

Changes:	https://github.com/Unidata/netcdf-c/releases
2019-04-30 19:07:06 +00:00
Yuri Victorovich
7639c5a9a6 science/libint: Update 1-2-1 -> 1-2-1-15 2019-04-28 18:12:59 +00:00
Yuri Victorovich
24deb98c5e science/gromacs: Broken on i386
Reported by:	fallout
2019-04-28 08:30:15 +00:00
Yuri Victorovich
8183bc2389 science/jmol: Update to 14.29.38 -> 14.29.40
Reported by:	portscout
2019-04-28 07:01:08 +00:00
Piotr Kubaj
889392b50e science/ALPSCore: fix build with GCC-based architectures
CMake Error at common/cmake/ALPSCommonModuleDefinitions.cmake:194 (target_compile_features):
  target_compile_features The compiler feature "cxx_std_11" is not known to
  CXX compiler

  "GNU"

  version 4.2.1.

Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D20049
2019-04-27 09:30:30 +00:00
Piotr Kubaj
bf6aa4f49e science/massxpert: fix build with GCC-based architectures
Replace USE_GCC=any with USE_GCC=yes to fix build on GCC architectures.

Build failure log:
CMake Error in lib/CMakeLists.txt:

  The compiler feature "cxx_decltype" is not known to CXX compiler

  "GNU"

   version 4.2.1.

Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D20067
2019-04-27 08:46:32 +00:00
Antoine Brodin
029aacfc97 Clean up plist 2019-04-25 13:51:20 +00:00
Yuri Victorovich
709668b071 science/chrono: fix build with GCC-based architectures
PR:		236847
Submitted by:	pkubaj
2019-04-24 22:11:06 +00:00
Thierry Thomas
77c8d5230f Fix on head by setting LLD_UNSAFE:
ld: error: /usr/lib/libpmc.so: undefined reference to std::__1::__basic_string_common<true>::__throw_length_error() const
ld: error: /usr/lib/libpmc.so: undefined reference to std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::append(char const*, unsigned long)
cc: error: linker command failed with exit code 1 (use -v to see invocation)

Since I'm here, add USES=gl.
2019-04-24 19:35:06 +00:00
Yuri Victorovich
a5d01b17a3 science/sparta: fix build with GCC-based architectures
PR:		237537
Submitted by:	pkubaj
2019-04-24 18:27:08 +00:00
Yuri Victorovich
c20f216053 science/sparta: Update 15Feb2019 -> 16Apr2019
Reported by:	github notification
2019-04-24 16:28:36 +00:00
Gerald Pfeifer
879e75a659 Related to revision 499061 bump ports with USES=fortran to have them
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.

Suggested by:	tijl
2019-04-22 13:16:33 +00:00
Yuri Victorovich
05bb8a1568 science/jmol: Update 14.29.37 -> 14.29.38
Reported by:	portscout
2019-04-22 06:56:12 +00:00
Stephen Montgomery-Smith
51df889f24 - Update to 3.1.0. 2019-04-22 01:12:30 +00:00
Max Brazhnikov
bd781394ba science/kst2:
- Update to 2019.03.25 snapshot
- Download tarball from the official KDE repo on Github
- Remove kde from CATEGORIES: kst is pure Qt app
- Add option for HDF5 data files support
- Enable all options by default
2019-04-21 20:53:50 +00:00
Yuri Victorovich
687977db77 science/qbox: Update 1_66_3 -> 1_67_1
Reported by:	portscout
2019-04-20 15:49:52 +00:00
Yuri Victorovich
161c93b9f6 science/gromacs: Update 2019.1 -> 2019.2
Reported by:	portscout
2019-04-20 15:47:27 +00:00
Yuri Victorovich
897def7f25 science/jmol: Update 14.29.36 -> 14.29.37
Reported by:	portscout
2019-04-20 15:41:33 +00:00
Sunpoet Po-Chuan Hsieh
f7b0b5b608 Update to 0.112
Changes:	https://metacpan.org/changes/distribution/Geo-WebService-Elevation-USGS
2019-04-19 23:27:17 +00:00
Sunpoet Po-Chuan Hsieh
8f9664371e Update to 4.1
- Update pkg-descr
- Update WWW
- Take maintainership

Changes:	https://pyteomics.readthedocs.io/en/latest/changelog.html
2019-04-18 18:00:52 +00:00
Tobias C. Berner
1c18b6d5c8 Update KDE Applications to 19.04.0
The changelog can be found here:
	- https://kde.org/announcements/announce-applications-19.04.0.php

Due to crashes on start, multimedia/kdenlive was kept at 18.12.3 for now.
2019-04-18 16:55:13 +00:00
Mathieu Arnold
86c3f76bc2 science/py-GPy does not support 3.6.
Noticed by:	irregular bulk -a with BUILD_ALL_PYTHON_FLAVORS set.
2019-04-15 15:37:45 +00:00
Mark Linimon
2f2a2d2860 These ports now build on powerpc64.
Approved by:	portmgr (tier-2 blanket)
2019-04-15 05:55:23 +00:00
Yuri Victorovich
fe285237af science/py-chempy: Update 0.7.7 -> 0.7.8
Reported by:	portscout
2019-04-14 18:47:28 +00:00
Yuri Victorovich
a76fa91399 science/nwchem: Update 6.8.1.20190403 -> 6.8.1.20190412 2019-04-13 23:55:32 +00:00
Sunpoet Po-Chuan Hsieh
59d0b61bd1 Update to 0.111
Changes:	https://metacpan.org/changes/distribution/Geo-WebService-Elevation-USGS
2019-04-13 23:45:27 +00:00
Yuri Victorovich
052b059ed9 science/erkale: Update g20190318 -> g20190412 2019-04-13 22:23:51 +00:00
Yuri Victorovich
a8244f4eb8 science/jmol: Update 14.29.34 -> 14.29.36
Reported by:	portscout
2019-04-13 14:31:02 +00:00
Jan Beich
9b21a3a084 devel/boost-*: update to 1.70.0
Changes:	http://www.boost.org/users/history/version_1_70_0.html
PR:		235956
Exp-run by:	antoine
Differential Revision:	https://reviews.freebsd.org/D19303
2019-04-12 06:36:31 +00:00
Antoine Brodin
63f5eeef8a Bump a few PORTREVISIONs after r498529
With hat:	portmgr
2019-04-10 06:18:31 +00:00
Yuri Victorovich
aaeb9d9849 science/cp2k: fix build with GCC-based architectures
PR:		237147
Submitted by:	Piotr Kubaj <pkubaj@anongoth.pl>
2019-04-10 04:21:15 +00:00
Sunpoet Po-Chuan Hsieh
40c9c7f7eb Update devel/readline to 8.0
- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://tiswww.case.edu/php/chet/readline/CHANGES
PR:		236156
Exp-run by:	antoine
2019-04-09 14:04:49 +00:00
Yuri Victorovich
2b2766e923 science/quantum-espresso: Update 6.4 -> 6.4.1
Reported by:	portscout
2019-04-09 06:25:11 +00:00
Yuri Victorovich
1a357398e8 science/octopus: Update 8.3 -> 8.4 2019-04-07 03:06:29 +00:00
Yuri Victorovich
09fd39ddc0 science/py-spglib: Update 1.12.0 -> 1.12.2 2019-04-07 02:35:10 +00:00
Yuri Victorovich
600b986c72 science/jmol: Update 14.29.32 -> 14.29.34
Reported by:	portscout
2019-04-07 01:28:15 +00:00
Max Brazhnikov
4f2027abfa science/scidavis: Update to 2.0.1 2019-04-06 16:58:57 +00:00
Max Brazhnikov
d15cc92143 - bump PORTREVISION after math/matio update 2019-04-06 16:46:17 +00:00
Yuri Victorovich
f70561658a science/cp2k: Supply the data directory needed for computation ; Change to GitHub 2019-04-06 16:28:55 +00:00
Yuri Victorovich
c18da9470d New port: science/cp2k-data: Data for cp2k quantum chemistry package 2019-04-06 16:27:13 +00:00
Yuri Victorovich
760ab9d2c6 science/nwchem: Update 6.8.1.20190319 -> 6.8.1.20190403 2019-04-06 03:48:42 +00:00
Dmitry Marakasov
a9a04b33ab - Document incompatibility with python 3.7+
Approved by:	portmgr blanket
2019-04-05 23:27:57 +00:00
Sunpoet Po-Chuan Hsieh
7d71839ddd Update to 2.0.1
Changes:	https://github.com/rgeo/rgeo-shapefile/blob/master/History.md
2019-04-05 22:45:42 +00:00
Sunpoet Po-Chuan Hsieh
40acbaa907 Update to 2.3.3
Changes:	https://github.com/spacetelescope/asdf/releases
2019-04-05 22:44:24 +00:00
Sunpoet Po-Chuan Hsieh
bf1e6eed4e Update to 1.10.5
Changes:	https://portal.hdfgroup.org/display/support/HDF5+1.10.5
2019-04-05 22:43:10 +00:00
Dmitry Marakasov
ddb930e9c1 - Document incompatibility with python 3.7+
Approved by:	portmgr blanket
2019-04-05 16:54:42 +00:00
Antoine Brodin
73a9a52a60 Remove bogus dependency, agrum links against libomp from llvm 2019-04-04 12:49:07 +00:00
Yuri Victorovich
6cd011e34b science/agrum: Correct the previous update: it didn't have the GL_COMMIT hash updated 2019-04-04 07:06:29 +00:00
Yuri Victorovich
b03f9efdc6 science/agrum: 0.14.1 -> 0.14.3 2019-04-04 05:47:55 +00:00
Yuri Victorovich
1600a9fa31 science/coot: Update 0.8.9.1 -> 0.8.9.2
* Add goocanvas dependency
* Add fftw dependency

Reported by:	portscout
2019-04-03 05:01:11 +00:00
Tobias Kortkamp
4c40458142 science/metaf2xml: Drop nop USE_PERL5=install 2019-04-01 16:08:12 +00:00
Yuri Victorovich
177d2530a2 science/vipster: Update 1.15b -> 1.16b 2019-04-01 15:57:41 +00:00
Yuri Victorovich
34d1c3d5f2 science/lammps: Update 28Feb2019 -> 29Mar2019 2019-03-31 17:33:52 +00:00
Sunpoet Po-Chuan Hsieh
73b1e3abe6 Update devel/protobuf to 3.7.1
- Bump PORTREVISION of dependent ports for shlib change

Changes:	https://github.com/protocolbuffers/protobuf/releases
PR:		236157
Exp-run by:	antoine
2019-03-31 13:41:02 +00:00
Yuri Victorovich
95280d7fe2 New port: science/py-qcengine: Quantum chemistry program executor and IO standardizer (QCSchema) 2019-03-31 08:24:32 +00:00
Yuri Victorovich
2132087e0d New port: science/py-qcelemental: Essentials for quantum chemistry 2019-03-31 08:12:37 +00:00
Yuri Victorovich
40c378ff41 science/py-scikit-fuzzy: Update 0.4.0 -> 0.4.1
Reported by:	portscout
2019-03-31 03:19:27 +00:00
Yuri Victorovich
4f4d7d93e3 science/rdkit: Update 2018.09.2 -> 2018.09.3
Reported by:	portscout
2019-03-31 02:31:56 +00:00
Yuri Victorovich
84ae29ed0e science/qmcpack: Update 3.6.0 -> 3.7.0
Reported by:	portscout
2019-03-30 20:26:02 +00:00
Yuri Victorovich
217e12b85b science/jdftx: Fix OCTAVE option
PR:		236901
Reported by:	tobik
2019-03-30 19:52:19 +00:00
Yuri Victorovich
e7414a585c science/qbox: Update 1.66.2 -> 1.66.3
Reported by:	portscout
2019-03-30 19:43:10 +00:00
Yuri Victorovich
5680c38c53 science/jmol: Update 14.29.31 -> 14.29.32
Also add -Djava.awt.headless=true to Jave VM args.

Reported by:	portscout
2019-03-30 18:34:00 +00:00
Gleb Popov
37c76d7fcd Update science/dlib-cpp and science/py-dlib to 19.17.
Approved by:	tcberner (mentor)
Differential Revision:	https://reviews.freebsd.org/D19761
2019-03-30 14:42:52 +00:00
Mark Linimon
a6ec0cdefb Mark broken on armv*:
gfortran8: error: iotk_base_tmp.f90: No such file or directory

Approved by:	portmgr (tier-2 blanket)
2019-03-29 23:06:42 +00:00
Mark Linimon
fe7ecf63f0 Mark broken on aarch64:
checking for ffgnrwll in -lcfitsio... no
  configure: error: could not find the cfitsio library

Approved by:	portmgr (tier-2 blanket)
2019-03-29 23:00:31 +00:00
Mark Linimon
48e339a177 Mark as broken on aarch64: fails to configure:
clang-8: error: no such file or directory: 'NOTFOUND'

Approved by:	portmgr (tier-2 blanket)
2019-03-29 22:20:47 +00:00
Mark Linimon
023651a567 Mark as broken on aarch64:
ccp4/ccp4_sysdep.h:244:4: error: "Can't determine machine number format"

Approved by:	portmgr (tier-2 blanket)
2019-03-29 21:06:52 +00:00
Jan Beich
19b83b347d Drop USES=gecko 2019-03-29 20:16:36 +00:00
Jason E. Hale
9d3404119e math/libqalculate: Update to 3.0.0
math/qalculate: Update to 3.0.0

- Bump PORTREVISION on math/libqalculate consumers due to shlib bump
2019-03-29 11:58:29 +00:00
Wen Heping
e2d65fcbe7 - Update to 0.9.4 2019-03-25 03:24:01 +00:00
Yuri Victorovich
90ed83815e science/erkale: Update g20190118 -> g20190318
Bug fixes and documentation update.
2019-03-21 06:17:51 +00:00
Yuri Victorovich
0a59de4c27 science/libcint: Update 3.0.14 -> 3.0.15
Reported by:	portscout
2019-03-20 18:04:47 +00:00
Jan Beich
03a22a5366 Switch to devel/llvm80 for DEFAULT_VERSIONS
PR:		235215
2019-03-20 12:23:25 +00:00
Yuri Victorovich
9f7122b967 science/nwchem: Update 6.8.1.20190314 -> 6.8.1.20190319
Add 'test' target.
2019-03-19 23:18:35 +00:00
Yuri Victorovich
effd6586da science/molsketch: Update 0.5.2 -> 0.6.0
Reported by:	portscout
2019-03-19 06:19:42 +00:00
Yuri Victorovich
ce30afb630 Re-add science/py-veusz: the latest version builds with Qt5 2019-03-17 20:32:18 +00:00
Sunpoet Po-Chuan Hsieh
0eea040532 Add py-geometer 0.1.2
Geometer is a geometry library for Python 3 that uses projective geometry and
numpy for fast geometric computation. In projective geometry every point in 2D
is represented by a three-dimensional vector and every point in 3D is
represented by a four-dimensional vector. This has the following advantages:

There are points at infinity that can be treated just like normal points.
- Projective transformations are described by matrices but they can also
  represent affine transformations i.e. also translations.
- Every two lines have a unique point of intersection if they lie in the same
  plane. Parallel lines have a point of intersection at infinity.
- Points of intersection, planes or lines through given points can be calculated
  using simple cross products or tensor diagrams.
- Special complex points at infinity and cross ratios can be used to calculate
  angles and to construct perpendicular geometric structures.
- Most of the computation in the library done via tensor diagrams (using
  numpy.einsum).

WWW: https://github.com/jan-mue/geometer
2019-03-17 18:21:39 +00:00
Yuri Victorovich
080d970c00 science/lammps: Update 12Dec2018 -> 28Feb2019 2019-03-17 17:32:57 +00:00
Yuri Victorovich
806dd326a8 science/nwchem: 6.8.1.20190222 (d8ac0a182) -> 6.8.1.20190314 (b959e5ee0) 2019-03-17 01:35:30 +00:00
Tobias C. Berner
369eb054b0 Qt4 deprecation: Remove Qt4 and its consumes.
2019-03-15 accessibility/qt4-accessible: Qt4 has been EOL since december 2015
2019-03-15 astro/qlandkartegt: Qt4 has been EOL since december 2015
2019-03-15 astro/stellarium-qt4: Qt4 has been EOL since december 2015
2019-03-15 astro/xglobe: Qt4 has been EOL since december 2015
2019-03-15 audio/acoustid-fingerprinter: Qt4 has been EOL since december 2015
2019-03-15 audio/cueplayer: Qt4 has been EOL since december 2015
2019-03-15 audio/esperanza: Qt4 has been EOL since december 2015
2019-03-15 audio/lastfm-desktop: Qt4 has been EOL since december 2015
2019-03-15 audio/minitunes: Qt4 has been EOL since december 2015
2019-03-15 audio/mixxx20: Qt4 has been EOL since december 2015
2019-03-15 audio/mumble: Qt4 has been EOL since december 2015
2019-03-15 audio/murmur: Qt4 has been EOL since december 2015
2019-03-15 audio/puddletag: Qt4 has been EOL since december 2015
2019-03-15 audio/qmpdclient: Qt4 has been EOL since december 2015
2019-03-15 audio/skype-call-recorder: Qt4 has been EOL since december 2015
2019-03-15 audio/virtual_oss_ctl: Qt4 has been EOL since december 2015
2019-03-15 biology/clustalx: Qt4 has been EOL since december 2015
2019-03-15 cad/klayout: Qt4 has been EOL since december 2015
2019-03-15 cad/layouteditor: Qt4 has been EOL since december 2015
2019-03-15 cad/leocad: Qt4 has been EOL since december 2015
2019-03-15 cad/meshlab: Qt4 has been EOL since december 2015
2019-03-15 cad/qfsm: Qt4 has been EOL since december 2015
2019-03-15 cad/qucs: Qt4 has been EOL since december 2015
2019-03-15 chinese/gcin-qt4: Qt4 has been EOL since december 2015
2019-03-15 chinese/qt4-codecs-cn: Qt4 has been EOL since december 2015
2019-03-15 chinese/qt4-codecs-tw: Qt4 has been EOL since december 2015
2019-03-15 chinese/qterm: Qt4 has been EOL since december 2015
2019-03-15 comms/dabstick-radio: Qt4 has been EOL since december 2015
2019-03-15 comms/hamfax: Qt4 has been EOL since december 2015
2019-03-15 comms/linpsk: Qt4 has been EOL since december 2015
2019-03-15 databases/py-qt4-sql: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-ibase-plugin: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-mysql-plugin: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-odbc-plugin: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-pgsql-plugin: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-sql: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-sqlite-plugin: Qt4 has been EOL since december 2015
2019-03-15 databases/qt4-sqlite3-plugin: Qt4 has been EOL since december 2015
2019-03-15 databases/sqliteman: Qt4 has been EOL since december 2015
2019-03-15 databases/tora: Qt4 has been EOL since december 2015
2019-03-15 deskutils/cdcat: Qt4 has been EOL since december 2015
2019-03-15 deskutils/fbreader: Qt4 has been EOL since december 2015
2019-03-15 deskutils/launchy: Qt4 has been EOL since december 2015
2019-03-15 deskutils/qorganizer: Qt4 has been EOL since december 2015
2019-03-15 deskutils/qrfcview: Qt4 has been EOL since december 2015
2019-03-15 deskutils/qtm: Qt4 has been EOL since december 2015
2019-03-15 deskutils/tuxcards: Qt4 has been EOL since december 2015
2019-03-15 deskutils/vym: Qt4 has been EOL since december 2015
2019-03-15 devel/apiextractor: Qt4 has been EOL since december 2015
2019-03-15 devel/automoc4: Qt4 has been EOL since december 2015
2019-03-15 devel/edb: Qt4 has been EOL since december 2015
2019-03-15 devel/generatorrunner: Qt4 has been EOL since december 2015
2019-03-15 devel/grantlee: Qt4 has been EOL since december 2015
2019-03-15 devel/gwenhywfar-qt4: Qt4 has been EOL since december 2015
2019-03-15 devel/kaptain: Qt4 has been EOL since december 2015
2019-03-15 devel/ninja-ide: Qt4 has been EOL since december 2015
2019-03-12 devel/physfs-devel: is the same as devel/physfs, serving no purpose
2019-03-15 devel/piklab: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-assistant: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-core: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-dbus: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-dbussupport: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-declarative: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-designer: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-designerplugin: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-help: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-qscintilla2: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-script: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-scripttools: Qt4 has been EOL since december 2015
2019-03-15 devel/py-qt4-test: Qt4 has been EOL since december 2015
2019-03-15 devel/pyside: Qt4 has been EOL since december 2015
2019-03-15 devel/pyside-tools: Qt4 has been EOL since december 2015
2019-03-15 devel/qbzr: Qt4 has been EOL since december 2015
2019-03-15 devel/qct: Qt4 has been EOL since december 2015
2019-03-15 devel/qdevelop: Qt4 has been EOL since december 2015
2019-03-15 devel/qprog: Qt4 has been EOL since december 2015
2019-03-15 devel/qross: Qt4 has been EOL since december 2015
2019-03-15 devel/qscintilla2: Qt4 has been EOL since december 2015
2019-03-15 devel/qscintilla2-designerplugin: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-assistant: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-assistant-adp: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-corelib: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-dbus: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-designer: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-help-tools: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-libqtassistantclient: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-linguist: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-linguisttools: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-makeqpf: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-moc: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-porting: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qdbusviewer: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qdoc3: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qmake: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qmlviewer: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qt3support: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qtsolutions-singleapplication: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qtsolutions-soap: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-qvfb: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-rcc: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-script: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-scripttools: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-testlib: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-uic: Qt4 has been EOL since december 2015
2019-03-15 devel/qt4-uic3: Qt4 has been EOL since december 2015
2019-03-15 devel/qtscriptgenerator: Qt4 has been EOL since december 2015
2019-03-15 devel/shiboken: Qt4 has been EOL since december 2015
2019-03-15 devel/subcommander2: Qt4 has been EOL since december 2015
2019-03-15 devel/universalindentgui: Qt4 has been EOL since december 2015
2019-03-15 editors/leo: Qt4 has been EOL since december 2015
2019-03-15 editors/lfhex: Qt4 has been EOL since december 2015
2019-03-15 editors/plume-creator-devel: Qt4 has been EOL since december 2015
2019-03-15 editors/textroom: Qt4 has been EOL since december 2015
2019-03-15 editors/yzis: Qt4 has been EOL since december 2015
2019-03-15 emulators/dboxfe: Qt4 has been EOL since december 2015
2019-03-15 emulators/q4wine: Qt4 has been EOL since december 2015
2019-03-15 emulators/qtemu: Qt4 has been EOL since december 2015
2019-03-15 emulators/swine: Qt4 has been EOL since december 2015
2019-03-15 finance/alkimia-qt4: Qt4 has been EOL since december 2015
2019-03-15 finance/bitcoin-armory: Qt4 has been EOL since december 2015
2019-03-15 finance/qhacc: Qt4 has been EOL since december 2015
2019-03-15 ftp/scythia: Qt4 has been EOL since december 2015
2019-03-15 games/bubble-chains: Qt4 has been EOL since december 2015
2019-03-15 games/capicity: Qt4 has been EOL since december 2015
2019-03-15 games/capitalism: Qt4 has been EOL since december 2015
2019-03-15 games/flukz: Qt4 has been EOL since december 2015
2019-03-15 games/goldencheetah: Qt4 has been EOL since december 2015
2019-03-15 games/jag: Qt4 has been EOL since december 2015
2019-03-15 games/kardsgt: Qt4 has been EOL since december 2015
2019-03-15 games/kcheckers: Qt4 has been EOL since december 2015
2019-03-15 games/openpref: Qt4 has been EOL since december 2015
2019-03-15 games/pokerth: Qt4 has been EOL since december 2015
2019-03-15 games/qgo: Qt4 has been EOL since december 2015
2019-03-15 games/qtads: Qt4 has been EOL since december 2015
2019-03-15 games/quackle: Qt4 has been EOL since december 2015
2019-03-15 games/spellathon: Qt4 has been EOL since december 2015
2019-03-15 games/sudoku-sensei: Qt4 has been EOL since december 2015
2019-03-15 games/tbe: Qt4 has been EOL since december 2015
2019-03-15 games/xptools: Qt4 has been EOL since december 2015
2019-03-15 german/tipp10: Qt4 has been EOL since december 2015
2019-03-15 graphics/appleseed: Qt4 has been EOL since december 2015
2019-03-15 graphics/aqsis: Qt4 has been EOL since december 2015
2019-03-15 graphics/autoq3d: Qt4 has been EOL since december 2015
2019-03-15 graphics/burplex: Qt4 has been EOL since december 2015
2019-03-15 graphics/darknock: Qt4 has been EOL since december 2015
2019-03-15 graphics/djview4-qt4: Qt4 has been EOL since december 2015
2019-03-15 graphics/easypaint: Qt4 has been EOL since december 2015
2019-03-15 graphics/eos-movrec: Qt4 has been EOL since december 2015
2019-03-15 graphics/gle-graphics: Qt4 has been EOL since december 2015
2019-03-15 graphics/lprof-devel: Qt4 has been EOL since december 2015
2019-03-15 graphics/luminance: Qt4 has been EOL since december 2015
2019-03-15 graphics/luxrender: Qt4 has been EOL since december 2015
2019-03-15 graphics/luxrender14: Qt4 has been EOL since december 2015
2019-03-15 graphics/meshviewer: Qt4 has been EOL since december 2015
2019-03-15 graphics/natron: Qt4 has been EOL since december 2015
2019-03-15 graphics/oyranos: Qt4 has been EOL since december 2015
2019-03-15 graphics/pencil: Qt4 has been EOL since december 2015
2019-03-15 graphics/prison: Qt4 has been EOL since december 2015
2019-03-15 graphics/py-qt4-svg: Qt4 has been EOL since december 2015
2019-03-15 graphics/qt4-iconengines: Qt4 has been EOL since december 2015
2019-03-15 graphics/qt4-imageformats: Qt4 has been EOL since december 2015
2019-03-15 graphics/qt4-opengl: Qt4 has been EOL since december 2015
2019-03-15 graphics/qt4-pixeltool: Qt4 has been EOL since december 2015
2019-03-15 graphics/qt4-svg: Qt4 has been EOL since december 2015
2019-03-15 graphics/qxv: Qt4 has been EOL since december 2015, qxv is unmaintained
2019-03-15 graphics/scantailor: Qt4 has been EOL since december 2015
2019-03-15 graphics/seexpr: Qt4 has been EOL since december 2015
2019-03-15 graphics/smillaenlarger: Qt4 has been EOL since december 2015
2019-03-15 graphics/structuresynth: Qt4 has been EOL since december 2015
2019-03-15 graphics/yagf: Qt4 has been EOL since december 2015
2019-03-15 japanese/qt4-codecs-jp: Qt4 has been EOL since december 2015
2019-03-15 korean/qt4-codecs-kr: Qt4 has been EOL since december 2015
2019-03-15 mail/qgmailnotifier: Qt4 has been EOL since december 2015
2019-03-15 math/qtiplot: Qt4 has been EOL since december 2015
2019-03-15 math/qtoctave: Qt4 has been EOL since december 2015
2019-03-15 math/qwtplot3d-qt4: Qt4 has been EOL since december 2015
2019-03-15 misc/py-qt4-demo: Qt4 has been EOL since december 2015
2019-03-15 misc/py-qt4-doc: Qt4 has been EOL since december 2015
2019-03-15 misc/qmetro: Qt4 has been EOL since december 2015
2019-03-15 misc/qt4-doc: Qt4 has been EOL since december 2015
2019-03-15 misc/qt4-l10n: Qt4 has been EOL since december 2015
2019-03-15 misc/qt4-qtconfig: Qt4 has been EOL since december 2015
2019-03-15 misc/qt4-qtdemo: Qt4 has been EOL since december 2015
2019-03-15 misc/saaghar: Qt4 has been EOL since december 2015
2019-03-15 multimedia/2mandvd: Qt4 has been EOL since december 2015
2019-03-15 multimedia/abby: Qt4 has been EOL since december 2015
2019-03-15 multimedia/avidemux-qt4: Qt4 has been EOL since december 2015
2019-03-15 multimedia/gstreamer-qt4: Qt4 has been EOL since december 2015
2019-03-15 multimedia/mediadownloader: Qt4 has been EOL since december 2015
2019-03-15 multimedia/mlt-qt4: Qt4 has been EOL since december 2015
2019-03-15 multimedia/phonon-xine: Qt4 has been EOL since december 2015
2019-03-15 multimedia/py-qt4-multimedia: Qt4 has been EOL since december 2015
2019-03-15 multimedia/py-qt4-phonon: Qt4 has been EOL since december 2015
2019-03-15 multimedia/qmmp: Qt4 has been EOL since december 2015
2019-03-15 multimedia/qmmp-plugin-pack: Qt4 has been EOL since december 2015
2019-03-15 multimedia/qt4-mobility: Qt4 has been EOL since december 2015
2019-03-15 multimedia/qt4-multimedia: Qt4 has been EOL since december 2015
2019-03-15 multimedia/umplayer: Qt4 has been EOL since december 2015
2019-03-15 net/avahi-qt4: Qt4 has been EOL since december 2015
2019-03-15 net/cagibi: Qt4 has been EOL since december 2015
2019-03-15 net/hupnp: Qt4 has been EOL since december 2015
2019-03-15 net/ostinato: Qt4 has been EOL since december 2015
2019-03-15 net/py-qt4-network: Qt4 has been EOL since december 2015
2019-03-15 net/qjsonrpc: Qt4 has been EOL since december 2015
2019-03-15 net/qoauth: Qt4 has been EOL since december 2015
2019-03-15 net/qt4-network: Qt4 has been EOL since december 2015
2019-03-15 net/qtweetlib: Qt4 has been EOL since december 2015
2019-03-15 net-im/libjreen: Qt4 has been EOL since december 2015
2019-03-15 net-im/psimedia: Qt4 has been EOL since december 2015
2019-03-15 net-im/ramblercontacts: Qt4 has been EOL since december 2015
2019-03-15 net-im/telepathy-logger-qt4: Qt4 has been EOL since december 2015
2019-03-15 net-im/turpial: Qt4 has been EOL since december 2015
2019-03-15 net-im/vacuum-im: Qt4 has been EOL since december 2015
2019-03-15 net-mgmt/nagiosagent: Qt4 has been EOL since december 2015
2019-03-15 net-mgmt/qkismet: Qt4 has been EOL since december 2015
2019-03-15 net-p2p/bitmessage: Qt4 has been EOL since december 2015
2019-03-15 net-p2p/eiskaltdcpp-qt: Qt4 has been EOL since december 2015
2019-03-15 net-p2p/valknut: Qt4 has been EOL since december 2015
2019-03-15 polish/qfaktury: Qt4 has been EOL since december 2015
2019-03-15 print/kpdftool: Qt4 has been EOL since december 2015
2019-03-15 print/scribus: Qt4 has been EOL since december 2015
2019-03-15 science/MOOSE-neural-simulator: Qt4 has been EOL since december 2015
2019-03-15 science/avogadro: Qt4 has been EOL since december 2015
2019-03-15 science/openstructure: Qt4 has been EOL since december 2015
2019-03-15 science/py-veusz: Qt4 has been EOL since december 2015
2019-03-15 science/qtresistors: Qt4 has been EOL since december 2015
2019-03-15 security/keepassx2: Qt4 has been EOL since december 2015
2019-03-15 security/kqoauth: Qt4 has been EOL since december 2015
2019-03-15 security/tpmmanager: Qt4 has been EOL since december 2015
2019-03-15 sysutils/android-file-transfer-qt4: Qt4 has been EOL since december 2015
2019-03-15 sysutils/bacula9-bat: Qt4 has been EOL since december 2015
2019-03-15 sysutils/bareos-traymonitor: Qt4 has been EOL since december 2015
2019-03-15 sysutils/bareos16-bat: Qt4 has been EOL since december 2015
2019-03-15 sysutils/bareos16-traymonitor: Qt4 has been EOL since december 2015
2019-03-15 sysutils/policykit-qt: Qt4 has been EOL since december 2015
2019-03-15 sysutils/qpxtool: Qt4 has been EOL since december 2015
2019-03-15 sysutils/qsynergy: Qt4 has been EOL since december 2015
2019-03-15 sysutils/qzeitgeist: Qt4 has been EOL since december 2015
2019-03-15 sysutils/searchmonkey: Qt4 has been EOL since december 2015
2019-03-15 sysutils/unetbootin: Qt4 has been EOL since december 2015
2019-03-15 textproc/beediff: Qt4 has been EOL since december 2015
2019-03-15 textproc/dixit: Qt4 has been EOL since december 2015
2019-03-15 textproc/goldendict: Qt4 has been EOL since december 2015
2019-03-15 textproc/ibus-qt: Qt4 has been EOL since december 2015
2019-03-15 textproc/py-qt4-xml: Qt4 has been EOL since december 2015
2019-03-15 textproc/py-qt4-xmlpatterns: Qt4 has been EOL since december 2015
2019-03-15 textproc/qt4-clucene: Qt4 has been EOL since december 2015
2019-03-15 textproc/qt4-xml: Qt4 has been EOL since december 2015
2019-03-15 textproc/qt4-xmlpatterns: Qt4 has been EOL since december 2015
2019-03-15 textproc/qt4-xmlpatterns-tool: Qt4 has been EOL since december 2015
2019-03-15 textproc/scim-bridge-qt4: Qt4 has been EOL since december 2015
2019-03-15 textproc/uim-qt4: Qt4 has been EOL since december 2015
2019-03-15 textproc/xxdiff: Qt4 has been EOL since december 2015
2019-03-15 www/aria2fe: Qt4 has been EOL since december 2015
2019-03-15 www/cutycapt: Qt4 has been EOL since december 2015
2019-03-15 www/py-qt4-webkit: Qt4 has been EOL since december 2015
2019-03-15 www/qt4-webkit: Qt4 has been EOL since december 2015
2019-03-15 www/qupzilla-qt4: Qt4 has been EOL since december 2015
2019-03-15 x11/leechcraft: Qt4 has been EOL since december 2015
2019-03-15 x11/py-qt4-opengl: Qt4 has been EOL since december 2015
2019-03-15 x11/qimageblitz: Qt4 has been EOL since december 2015
2019-03-15 x11/qt4-graphicssystems-opengl: Qt4 has been EOL since december 2015
2019-03-15 x11/qt4-inputmethods: Qt4 has been EOL since december 2015
2019-03-15 x11/qxkb: Qt4 has been EOL since december 2015
2019-03-15 x11-fonts/fontmatrix: Qt4 has been EOL since december 2015
2019-03-15 x11-themes/qt4-style-float: Qt4 has been EOL since december 2015
2019-03-15 x11-themes/qt4-style-phase: Qt4 has been EOL since december 2015
2019-03-15 x11-themes/qt4-style-quantumstyle: Qt4 has been EOL since december 2015
2019-03-15 x11-themes/qtcurve-qt4: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/attica: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/py-qt4-gui: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/qt4-declarative: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/qt4-gui: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/qt4pas: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/qwt5: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/qwt5-designerplugin: Qt4 has been EOL since december 2015
2019-03-15 x11-toolkits/soqt: Qt4 has been EOL since december 2015
2019-03-15 x11-wm/qlwm: Qt4 has been EOL since december 2015

Approved by:	portmgr (implicit)
2019-03-16 21:55:51 +00:00
Tobias C. Berner
a4d40c53c4 science/libgeodecomp: remove QT4 option (Qt4 drpecation) 2019-03-16 18:00:13 +00:00
Tobias C. Berner
704a3bb184 science/kst2: remove QT4/QT5 options (Qt4 deprecation)
Approved by:	portmgr (implicit)
2019-03-16 17:54:45 +00:00
Yuri Victorovich
71d065a55b science/py-gsd: Update 1.6.0 -> 1.6.1
Reported by:	portscout
2019-03-16 16:03:11 +00:00
Yuri Victorovich
25622ad4bf science/sparta: Update 29Oct2018 -> 15Feb2019
Add PORTSCOUT=ignore.
2019-03-16 16:00:50 +00:00
Yuri Victorovich
7b4b39ae1f science/tinker: Update 8.5.3 -> 8.6.1
Move Makefile sections to proper places to pet portlint.

Reported by:	portscout
2019-03-16 15:50:33 +00:00
Tobias C. Berner
777523e72c science/silo: remove QT4 option (Qt4 deprecation)
Approved by:	portmgr (implicit)
2019-03-16 14:06:23 +00:00
Yuri Victorovich
23fc7cf349 science/coordgenlibs: Update 1.2.1 -> 1.2.2
Reported by:	portscout
2019-03-16 05:51:15 +00:00
Mathieu Arnold
ca99d08fef Remove unused USE_PYTHON values.
Reported by:	tobik (in D19569)
2019-03-13 13:03:11 +00:00
Mark Linimon
42a4ffa4e7 Fix build on gcc-based architectures:
/usr/local/lib/libgraphite2.so.3: undefined reference to `__cxa_throw_bad_array_new_length@CXXABI_1.3.8'
2019-03-13 05:13:22 +00:00
Mark Linimon
68fe12fc41 Fix build on gcc-based architectures:
C++11 is required to use dlib, but the version of GCC you are using is too old and doesn't support C++11.  You need GCC 4.8 or newer.

Approved by:	portmgr (tier-2 blanket)
2019-03-13 05:10:05 +00:00
Mark Linimon
2a08c8fce6 Fix build on gcc-based architectures:
//usr/local/lib/libgraphite2.so.3: undefined reference to `__cxa_throw_bad_array_new_length@CXXABI_1.3.8'

While here, pet portlint.
2019-03-13 05:09:02 +00:00
Stephen Montgomery-Smith
93c37d228f - Update devel/gdcm to 2.8.9.
- Bump portrevision for dependent ports.
2019-03-10 00:48:01 +00:00
Yuri Victorovich
8cc0cedbc9 science/massxpert: Update 3.4.0 -> 3.6.1
This software seems to be abandoned by its upstream, and rescued by the Debian team.
I've set its source to Debian's GitLab server, where they source it from now.

Port changes:
* 3.6.1 is Qt5-based: remove the DEPRECATED lines
* USE_GCC seems to be needed due to clang error messages
* MAKE_JOBS_UNSAFE isn't needed
2019-03-09 23:23:33 +00:00
Sunpoet Po-Chuan Hsieh
793cacab37 Update to 2.0.1
Changes:	https://github.com/rgeo/rgeo/blob/master/History.md
2019-03-09 12:09:33 +00:00
Tobias C. Berner
3d439985af Update KDE Applications to 18.12.3 2019-03-07 18:35:32 +00:00
Rene Ladan
01e4c04538 Remove expired ports:
2019-03-05 devel/elixir-lager_logger: Broken for more than 6 months
2019-03-05 devel/gpsim: Broken for more than 6 months
2019-03-05 devel/hgview: Broken for more than 6 months
2019-03-05 games/mudmagic: Broken for more than 6 months
2019-03-05 math/mumps-mpich: Broken for more than 6 months
2019-03-05 math/sdpara: Broken for more than 6 months
2019-03-05 net/tn5250j: Broken for more than 6 months
2019-03-05 net-im/pidgin-skype: Broken for more than 6 months
2019-03-05 net-im/skype: Broken for more than 6 months
2019-03-05 net-im/skype-devel: Broken for more than 6 months
2019-03-05 science/dft_tools: Broken for more than 6 months
2019-03-05 science/triqs: Broken for more than 6 months
2019-03-05 security/hamachi: Broken for more than 6 months
2019-03-05 textproc/elixir-ex_doc: Broken for more than 6 months
2019-03-05 x11/altyo: Broken for more than 6 months
2019-03-05 x11/pantheon-terminal: Broken for more than 6 months
2019-03-05 x11-wm/e-module-everything-websearch: Broken for more than 6 months
2019-03-06 21:49:00 +00:00
Thierry Thomas
1b7c99c8f1 - Upgrade science/cgnslib to 3.4.0
Release notes at <https://github.com/CGNS/CGNS/releases/tag/v3.4.0>.

- Split tests and fortran option

- Bump PORTREVISION of consumers.
2019-03-06 19:49:56 +00:00
Yuri Victorovich
6c2156fa1d science/dvc: Update 0.30.0 -> 0.30.1
Reported by:	portscout
2019-03-06 03:48:42 +00:00