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26 commits

Author SHA1 Message Date
Sunpoet Po-Chuan Hsieh
de654cac5b Update to 2.0.1 
Changes:	https://github.com/rvosa/bio-phylo/releases
 2017-12-26 23:20:28 +00:00
Wen Heping
05a45a398d - Update to 0.58 2014-12-07 04:41:47 +00:00
Mathieu Arnold
eee58d187e Change the way Perl modules are installed, update the default Perl to 5.18. 
Before, we had:

  site_perl :           lib/perl5/site_perl/5.18
  site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
  perl_man3 :           lib/perl5/5.18/man/man3

Now we have:

  site_perl : lib/perl5/site_perl
  site_arch : lib/perl5/site_perl/mach/5.18
  perl_man3 : lib/perl5/site_perl/man/man3

Modules without any .so will be installed at the same place regardless of the
Perl version, minimizing the upgrade when the major Perl version is changed.
It uses a version dependent directory for modules with compiled bits.

As PERL_ARCH is no longer needed in plists, it has been removed from
PLIST_SUB.

The USE_PERL5=fixpacklist keyword is removed, the .packlist file is now
always removed, as is perllocal.pod.

The old site_perl and site_perl/arch directories have been kept in the
default Perl @INC for all Perl ports, and will be phased out as these old
Perl versions expire.

PR:		194969
Differential Revision:	https://reviews.freebsd.org/D1019
Exp-run by:	antoine
Reviewed by:	perl@
Approved by:	portmgr
 2014-11-26 13:08:24 +00:00
Baptiste Daroussin
99a3e8559c Cleanup plist 2014-10-20 07:10:48 +00:00
Andrej Zverev
f41a84cc7d - support stage 2014-01-05 12:07:20 +00:00
Wen Heping
881d1953d7 - Update to 0.56 2013-07-20 10:04:32 +00:00
Frederic Culot
417a7b673b - Update to 0.52 [1] 
- Capitalize names (Perl) in COMMENT

PR:		ports/176003 [1]
Submitted by:	Gea-Suan Lin <gslin@gslin.org>
 2013-02-16 14:58:51 +00:00
Sunpoet Po-Chuan Hsieh
8825b172e2 - Update to 0.50 
- Add TEST_DEPENDS
- Sort PLIST
 2012-06-12 18:55:28 +00:00
Wen Heping
6571b7f059 - Update to 0.46 2012-03-05 08:22:46 +00:00
Sunpoet Po-Chuan Hsieh
80331d2a02 - Update to 0.43 2011-10-17 01:38:22 +00:00
Sunpoet Po-Chuan Hsieh
1abb4c4130 - Update to 0.39 2011-08-01 03:11:37 +00:00
Sunpoet Po-Chuan Hsieh
44e3305c58 - Update to 0.38 
- Sort MAN3 and PLIST
 2011-07-16 06:08:34 +00:00
Wen Heping
6edfd6fb2e - Update to 0.36 2011-04-01 08:34:03 +00:00
Wen Heping
0c58bca1ec - Update to 0.33 2010-12-16 08:19:56 +00:00
Philip M. Gollucci
7823a28b14 - Update to 0.32 
With Hat:       perl@
Changes:        http://search.cpan.org/dist/Bio-Phylo/Changes
 2010-12-12 21:29:40 +00:00
Wen Heping
fabc490448 - Update to 0.31 2010-11-22 08:50:39 +00:00
Philippe Audeoud
3ccd369106 - Update to 0.28 2010-11-09 14:15:44 +00:00
Wen Heping
8d82354698 - Update to 0.26 
- Reset maintainer to perl@
 2010-10-25 10:59:25 +00:00
Wen Heping
67d49aa254 - Update to 0.22 2010-10-22 09:29:44 +00:00
Wen Heping
d3c411d05d - Update to 0.21 2010-03-09 07:34:48 +00:00
Wen Heping
22c4a3da76 - Update to 0.18 
- Adopt

Feature safe:	yes
 2010-03-03 13:44:19 +00:00
Aaron Dalton
9cec3ba81e Bump to v0.16. 
PR:		111719
Submitted by:	araujo@bsdmail.org
 2007-06-19 20:15:58 +00:00
Aaron Dalton
dda8ae5412 Update to v0.15 2006-12-27 18:58:26 +00:00
Frank J. Laszlo
4ffcd931fe - Update to 0.14 
Submitted by:	Jin-Shan Tseng <tjs@cdpa.nsysu.edu.tw>
Approved by:	maintainer timeout (3 months)
 2006-12-07 15:43:27 +00:00
Aaron Dalton
e25d96e450 - Updated from 0.07 to 0.12 
Approved by:	tobez (implicit)

0.08 20/Feb/2006 15:14
                       Improved referential integrity between nodes,
                                taxa, and data.
                       Implemented Fastnexus parser
                       Node object silently implements Bio::Tree::NodeI
                       		interface if BioPerl is installed
                       Tree object silently implements Bio::Tree::TreeI
                       		interface if BioPerl is installed
                       Added convertor methods for XML and CIPRES
                       Implemented more Matrix methods
                       Implemented symbol tables in Bio::Phylo::Util::CONSTANT
                       Implemented visit method for listable objects
                       Implemented caching infrastructure for calculations
                       Changed object-model to inside-out arrays
                       Added Biodiversity measures code by Aki Mimoto
                       Moved constants and exceptions to Bio::Phylo::Util::*
                       Fixed memory leak due to circular references
 2006-05-19 23:18:32 +00:00
Aaron Dalton
29ad3c789c Adding port biology/p5-Bio-Phylo, Phylogenetic analysis using perl. 
Approved by:	tobez (implicit)
 2006-05-13 16:48:15 +00:00