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freebsd-ports/science
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John Marino f31e3f807e Stage science/mpqc and science/mpqc-mpich 
* reset maintainer
 * converted to options instead of WITH_* knobs
 * moved files/manpages to pkgplist
 * USES+= libtool
 * modernize
2014-09-08 00:20:03 +00:00
..
2d-rewriter - Update to 1.5 2014-06-05 19:36:14 +00:00
afni math/gsl: 2014-08-17 13:09:56 +00:00
avogadro Convert a bunch of USE_BZIP2 to USES=tar:bzip2 2014-07-29 18:41:15 +00:00
bddsolve - Support staging 2014-03-20 09:34:19 +00:00
bft Add USES=libtool and INSTALL_TARGET=install-strip 2014-07-08 15:24:14 +00:00
bodr Convert a bunch of USE_BZIP2 to USES=tar:bzip2 2014-07-29 18:41:15 +00:00
brian - Added STAGE support 2014-05-31 04:56:47 +00:00
buddy Add DOCS option where PORTDOCS is in plist. 2014-07-16 03:18:26 +00:00
cdcl - Update to 5.4.8 2014-05-22 15:46:16 +00:00
cdf Remove NOPORTDOCS and NOPORTEXAMPLES. 2014-07-04 22:08:14 +00:00
cdo - Update to 1.6.4 2014-07-04 02:49:34 +00:00
cgnslib - Update to 1.8.12 (from science/hdf5-18) 2014-05-03 00:55:30 +00:00
cgribex - Add cgribex 1.6.3 2014-04-29 13:28:31 +00:00
checkmol Stagify. 2014-06-10 12:52:48 +00:00
chemical-mime-data Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
chemtool - Fix missing library problems when the linker enforces explicit linking 2014-08-26 14:06:08 +00:00
chemtool-devel - Fix missing library problems when the linker enforces explicit linking 2014-08-26 14:06:08 +00:00
clhep science/clhep: Upgrade version 2.2.0.1 => 2.2.0.3 2014-08-24 09:07:33 +00:00
colt Remove NOPORTDOCS and NOPORTEXAMPLES. 2014-07-04 22:08:14 +00:00
crf++ - Convert to USES=libtool 2014-07-08 15:18:44 +00:00
dcl Remove NOPORTDOCS and NOPORTEXAMPLES. 2014-07-04 22:08:14 +00:00
devisor Stagify. 2014-06-10 14:43:35 +00:00
dlpoly-classic - Update net/openmpi from 1.8.1 to 1.8.2 2014-08-26 11:25:13 +00:00
ecs Fix build with texlive 2014-07-21 21:57:18 +00:00
elmer-eio Reset the 99 ports still listed under sylvio@ 2014-06-11 18:55:29 +00:00
elmer-matc Reset the 99 ports still listed under sylvio@ 2014-06-11 18:55:29 +00:00
elmer-meshgen2d Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
elmergrid Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
epte - Stage support 2014-02-06 10:41:38 +00:00
fastcap Repair instances, almost all courtesy of bf ;-), of spaces 2014-07-29 20:55:27 +00:00
fasthenry Support stage 2014-08-29 18:33:30 +00:00
fisicalab math/gsl: 2014-08-17 13:09:56 +00:00
fvcom - Update to 4.4.0 2014-08-15 21:08:21 +00:00
fvcom-mpi - Update net/openmpi from 1.8.1 to 1.8.2 2014-08-26 11:25:13 +00:00
fvm - Upgrade to 1.5; 2014-09-01 21:50:14 +00:00
gchemutils When linking a library libA with a library libB using libtool, if libB.la 2014-04-23 13:25:16 +00:00
getdp math/gsl: 2014-08-17 13:09:56 +00:00
ghemical - Stagify 2014-08-06 16:05:23 +00:00
ghmm - Convert to USES=libtool 2014-07-08 14:50:22 +00:00
gnudatalanguage Update CMake to 3.0.1. 2014-09-02 12:59:54 +00:00
gramps Berkeley DB cleanup, remove versions 4.0 ... 4.7. 2014-08-21 22:50:29 +00:00
grib_api - Add grib_api 1.12.3 2014-08-29 17:31:42 +00:00
gromacs - Upgrade to 1.5; 2014-09-01 21:50:14 +00:00
gsmc - Fix missing library problems when the linker enforces explicit linking 2014-08-26 14:06:08 +00:00
gtamsanalyzer Bump PORTREVISION on more ports that depend on libgcrypt after the update 2014-08-05 22:13:29 +00:00
gwyddion math/fftw3: 2014-08-31 16:36:22 +00:00
h5utils Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
harminv lang/guile: 2014-08-31 15:17:49 +00:00
hdf - USES=libtool tar:bzip2 2014-07-08 14:49:02 +00:00
hdf-java Convert GMAKE to MAKE_CMD 2014-06-25 05:35:31 +00:00
hdf5 - Mark MAKE_JOBS_UNSAFE 2014-05-24 06:50:24 +00:00
hs-bio - Update The Glorious Glasgow Haskell Compiler to version 7.8.3 2014-08-10 22:34:50 +00:00
InsightToolkit
isaac-cfd Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
jmol
jstrack Mark BROKEN: Checksum and size mismatch 2014-08-01 17:26:45 +00:00
kalzium Upgrade OpenEXR and ilmbase to 2.2.0. 2014-08-15 20:37:31 +00:00
kst2 math/gsl: 2014-08-17 13:09:56 +00:00
lamprop science/lamprop: switch to USES=python 2014-08-16 11:42:41 +00:00
libctl lang/guile: 2014-08-31 15:17:49 +00:00
libghemical - Switch to USES=libtool, drop .la files 2014-08-06 16:06:22 +00:00
libint - Stagify 2014-08-06 16:06:55 +00:00
libkml - Add SWIG option 2014-05-25 18:47:55 +00:00
liblinear Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
liboglappth - Add USES=libtool and INSTALL_TARGET=install-strip 2014-07-08 13:54:24 +00:00
libquantum Convert to USES=libtool 2014-07-08 13:34:32 +00:00
libsvm Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
libsvm-python - Update to 3.18 2014-05-30 13:47:15 +00:00
linsmith - maintain by hamradio as we have gsmc another smith charting program 2014-06-29 11:55:30 +00:00
massxpert - Support staging. 2014-06-30 20:38:59 +00:00
mbdyn Update to 1.4.3 2014-08-29 18:43:03 +00:00
medit - Fix missing library problems when the linker enforces explicit linking 2014-08-26 14:06:08 +00:00
meep lang/guile: 2014-08-31 15:17:49 +00:00
mei - Add USES=libtool 2014-07-07 21:57:42 +00:00
metaf2xml Add DOCS option where PORTDOCS is in plist. 2014-07-16 03:18:26 +00:00
minc2 science/minc2: Unbreak, Upgrade version 2.0.18 => 2.2.00 and stage 2014-07-29 21:33:51 +00:00
mol2ps Stagify. 2014-06-10 14:46:36 +00:00
mpb lang/guile: 2014-08-31 15:17:49 +00:00
mpqc Stage science/mpqc and science/mpqc-mpich 2014-09-08 00:20:03 +00:00
mpqc-mpich Stage science/mpqc and science/mpqc-mpich 2014-09-08 00:20:03 +00:00
ncs - Upgrade to 1.5; 2014-09-01 21:50:14 +00:00
netcdf Fix packaging with default options (without DOXYGEN) 2014-05-03 11:43:26 +00:00
netcdf-cxx - Use USE_GITHUB 2014-08-15 17:27:48 +00:00
netcdf-fortran - Cleanup Makefile 2014-08-17 09:56:47 +00:00
nifticlib Restore r323814 to remove MAKE_JOBS_UNSAFE. 2014-02-20 22:40:14 +00:00
openbabel The FreeBSD x11@ and graphics team proudly presents 2014-04-16 18:28:47 +00:00
openkim Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
p5-Algorithm-SVMLight Modernize LIB_DEPENDS 2014-07-14 18:42:04 +00:00
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB - Pass maintainership to perl@ 2014-05-22 15:02:27 +00:00
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR - Update to 1.27 2014-06-25 12:14:23 +00:00
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS
p5-PerlMol
p5-Physics-Unit Support staging. 2014-02-06 14:10:06 +00:00
paje Bump PORTREVISION on more ports that depend on libgcrypt after the update 2014-08-05 22:13:29 +00:00
paraview science/paraview: alternative fix with USES+= execinfo instead 2014-09-01 19:53:11 +00:00
pnetcdf - Upgrade to 1.5; 2014-09-01 21:50:14 +00:00
psychopy - Enable stagedir support 2014-06-22 10:55:50 +00:00
pulseview science/pulseview: Remove unnecessary RUN_DEPENDS 2014-08-03 16:16:21 +00:00
py-coards
py-DendroPy - Support staging 2014-06-01 21:30:40 +00:00
py-h5py science/py-h5py: Upgrade to 2.3.0 2014-06-09 05:07:54 +00:00
py-hcluster science/py-hcluster: support stage 2014-06-26 14:27:46 +00:00
py-mdp Convert all :U to :tu and :L to :tl 2014-05-05 09:45:36 +00:00
py-mlpy math/gsl: 2014-08-17 13:09:56 +00:00
py-netCDF4 - Pass maintainership to submitter 2014-06-07 18:15:43 +00:00
py-obspy - Remove easy_install dependency 2014-06-15 08:23:19 +00:00
py-paida science/py-paida: support stage 2014-08-05 13:22:35 +00:00
py-pupynere Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
py-pyaixi
py-pydap science/py-pydap: remove useless python knobs 2014-06-20 01:48:34 +00:00
py-pydicom - Added STAGE support 2014-05-31 13:51:28 +00:00
py-pysal - Add py-pysal 1.8.0 2014-09-04 16:24:31 +00:00
py-scikit-learn Update to versiob 0.15.0 2014-07-16 11:53:12 +00:00
py-scimath - Add STAGE support 2014-05-31 13:54:24 +00:00
py-scipy - Pass maintainership to python@ 2014-09-07 14:58:55 +00:00
py-ws2300 - Update to 1.9 2014-05-29 05:11:17 +00:00
pybrain - Update to 0.3.2 2014-05-31 13:59:02 +00:00
pycdf science/pycdf: support stage and use auto plist 2014-08-05 13:27:44 +00:00
pynn remove NO_STAGE. 2014-06-10 14:48:43 +00:00
pyteomics science/pyteomics: 2014-04-03 10:10:18 +00:00
pyteomics.biolccc
qcl - Fix build with clang by using std::vector instead of variable size array of non-POD type 2014-09-04 18:43:58 +00:00
qtresistors
R-cran-AMORE Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
R-cran-bayesm Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
R-cran-DCluster Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
R-cran-e1071 - Update to 1.6-4 2014-09-06 06:16:50 +00:00
R-cran-eco Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
R-cran-Epi Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
R-cran-epicalc Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
R-cran-snow Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
R-cran-som Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
ruby-dcl science/ruby-dcl: fixed broken; use gcc 2014-08-21 20:29:20 +00:00
ruby-gphys many ruby/rubygem ports: death of rubyforge.org 2014-08-19 15:35:35 +00:00
ruby-netcdf many ruby/rubygem ports: death of rubyforge.org 2014-08-19 15:35:35 +00:00
rubygem-ai4r science/rubygem-ai4r: update to 1.13 2014-08-23 21:52:50 +00:00
rubygem-netcdf - Update to 4.3.2 (from science/netcdf4) 2014-05-03 03:17:19 +00:00
sigrok-cli science/sigrok-cli: update to 0.5.0 2014-07-28 23:06:29 +00:00
sigrok-firmware Add new port: science/sigrok-firmware 2014-08-03 22:37:51 +00:00
sigrok-firmware-fx2lafw Add new port: science/sigrok-firmware-fx2lafw 2014-08-03 22:24:50 +00:00
sigrok-firmware-utils Add new port: science/sigrok-firmware-utils 2014-08-03 22:09:07 +00:00
silo - Add USES=libtool 2014-07-07 21:56:17 +00:00
simlib Stagify. 2014-06-10 15:07:59 +00:00
simsmith Java based Smith chart program. Performs single-frequency and sweep charting 2014-07-03 21:02:10 +00:00
step math/gsl: 2014-08-17 13:09:56 +00:00
svmlight In some straightforward cases, protect documentation behind 2014-08-04 03:40:14 +00:00
szip - Add my LOCAL to MASTER_SITES 2014-04-29 13:28:25 +00:00
udunits - Update to 2.2.17 2014-09-03 19:09:22 +00:00
v_sim - Add USES=libtool 2014-07-07 21:35:34 +00:00
veusz Update the default version of GCC used in the Ports Collection from 2014-03-10 20:55:20 +00:00
vmd Stage science/vmd 2014-08-30 14:17:53 +00:00
voro++ - Update to 0.4.6 2014-02-21 10:29:52 +00:00
xfce4-equake-plugin - Fix checksum 2014-04-27 15:10:34 +00:00
xmakemol Stagify. 2014-06-10 15:13:44 +00:00
Makefile - Add py-pysal 1.8.0 2014-09-04 16:24:31 +00:00