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freebsd-ports/science
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Alexey Dokuchaev c9855c03b8 - Tighten Makefile header and COMMENT 
- Convert to OptionsNG (docs, examples)
- Unbreak parallel builds (-jX)
- Minor Makefile and pkg-descr cleanups

Reported by:	pointyhat-west
2013-07-28 09:46:15 +00:00
..
2d-rewriter Convert to USES=imake 2013-06-28 22:25:57 +00:00
2dhf
abinit Rectify USE_TEX to support both of teTeX and TeXLive. 2013-05-11 17:58:55 +00:00
afni Convert from USE_MOTIF to USES=motif 2013-07-10 07:00:44 +00:00
avogadro - Backout previous commit 2013-05-15 05:16:51 +00:00
bddsolve
bft Upgrade Code_Saturne to 2.0. 2012-07-07 15:15:56 +00:00
bodr - Drop all my ports 2013-07-09 21:26:48 +00:00
brian - Update to 1.4.1 2013-07-23 03:19:47 +00:00
buddy
cdcl Update to 5.4.7 2012-12-19 03:01:41 +00:00
cdf
cdo - Update to 1.6.0 2013-06-08 21:49:40 +00:00
cgnslib Downgrade to 3.1.4. 2013-07-10 13:40:57 +00:00
checkmol - worked with upstream to roll versioned source distfile 2013-06-01 05:10:39 +00:00
chemical-mime-data Adopt, pet portlint a bit and update to new ports features. 2013-07-09 22:06:15 +00:00
chemtool - update png to 1.5.10 2012-06-01 05:26:28 +00:00
chemtool-devel Mark jobs unsafe 2013-07-10 13:12:03 +00:00
clhep
colt Decommissioning java 1.5 (EOLed since October 2009): 2012-12-10 13:43:43 +00:00
crf++
dcl Mark jobs unsafe 2013-07-10 11:54:55 +00:00
devisor Convert NOPORTDOCS -> PORT_OPTIONS:MDOCS. 2013-06-20 13:59:24 +00:00
dlpoly-classic Convert science to new options framework 2013-04-28 22:08:22 +00:00
dtiquery
ecs WITHOUT_NLS -> PORT_OPTIONS:MNLS 2013-06-04 14:40:29 +00:00
elmer-eio
elmer-hutiter
elmer-matc
elmer-meshgen2d
elmergrid
elmerpost
epte - Update to 2.0.8 2012-08-06 07:19:41 +00:00
euler Fix spelling LICENCE -> LICENSE. 2013-06-13 15:30:22 +00:00
fastcap - Tighten Makefile header and COMMENT 2013-07-28 09:46:15 +00:00
fasthenry update to 3.0wr-021113 2013-03-28 01:06:02 +00:00
felt Convert from USE_MOTIF to USES=motif 2013-07-10 07:00:44 +00:00
flounder - Fix build with clang 2012-12-23 19:11:12 +00:00
fvcom Add new ports science/fvcom and science/fvcom-mpi: 2013-02-20 17:30:45 +00:00
fvcom-mpi Add new ports science/fvcom and science/fvcom-mpi: 2013-02-20 17:30:45 +00:00
fvm Chase french/med upgrade. 2013-03-19 20:35:32 +00:00
g3data - update png to 1.5.10 2012-06-01 05:26:28 +00:00
gamess update to 2012/5/1 R2 version. 2013-03-05 11:43:18 +00:00
gchemutils Update to 0.14.2. 2013-06-27 11:42:57 +00:00
gdis Fix build with recent binutils 2013-07-26 09:46:53 +00:00
getdp - forgot to remove a file in the last update. 2012-11-08 00:02:06 +00:00
ghemical - Convert USE_GETTEXT to USES (part 1) 2013-04-24 07:35:40 +00:00
ghmm
gnudatalanguage Finish converting the whole ports tree to USES=pkgconfig 2013-04-23 14:20:25 +00:00
gramps gramps installs a .desktop file with a MimeType and registers Mime types 2013-06-24 22:02:02 +00:00
gromacs - Update to 4.6.3 2013-07-15 14:38:36 +00:00
gsmc - update png to 1.5.10 2012-06-01 05:26:28 +00:00
gtamsanalyzer . portlint: remove whitespace before end of line; 2013-06-20 13:06:02 +00:00
gwyddion Convert to USES to update-desktop-database on package install and uninstall 2013-06-30 21:25:03 +00:00
h5utils - update png to 1.5.10 2012-06-01 05:26:28 +00:00
harminv
hdf - Update to 4.2.8. 2012-12-20 05:41:13 +00:00
hdf-java . remove shlib ABI version numbers from LIB_DEPENDS; 2013-06-20 13:25:04 +00:00
hdf5 science/hdf5: Remove h5perf that is missing shared library 2013-07-22 18:17:31 +00:00
hdf5-18 Convert science to new options framework 2013-04-28 22:08:22 +00:00
hs-bio - Update The Glorious Glasgow Haskell Compiler to version 7.6.3 2013-06-04 18:53:40 +00:00
InsightToolkit Readd specific EXAMPLES description because of specific comment in it 2013-04-29 05:39:52 +00:00
isaac-cfd . introduce optionsNG; 2013-06-20 16:19:43 +00:00
jmol Decommissioning java 1.5 (EOLed since October 2009): 2012-12-10 13:43:43 +00:00
jstrack - update to 3.3.4 (old version isn't fetchable anymore) 2012-11-08 11:40:29 +00:00
kalzium Fix plist. 2013-07-15 13:54:31 +00:00
kst2 - convert USE_CMAKE to USES 2013-03-22 20:06:14 +00:00
lamprop
libctl - Does not build on 8.3-i386. Does build ok on 9.1-i386. 2013-04-15 17:29:36 +00:00
libghemical - Convert USE_GETTEXT to USES (part 1) 2013-04-24 07:35:40 +00:00
libint
libkml Fix typos and make small modifications in COMMENT (according to Porter's 2012-08-03 15:54:35 +00:00
liblinear Convert science to new options framework 2013-04-28 22:08:22 +00:00
liboglappth This changes almost all the "gnomehack" only USE_GNOME cases to USES= pathfix. 2013-03-19 13:04:30 +00:00
libquantum
libsvm Convert science to new options framework 2013-04-28 22:08:22 +00:00
libsvm-python
linsmith - Update to 0.99.26 2013-07-22 15:23:15 +00:00
massxpert - Changed my email 2013-07-22 14:34:22 +00:00
mayavi . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-20 14:05:24 +00:00
mbdyn Convert science to new options framework 2013-04-28 22:08:22 +00:00
mcstas Fix with bmake(1) 2013-05-03 08:17:33 +00:00
medit Fix build with clang. 2013-06-12 20:03:25 +00:00
meep - Fix pkgconfig 2013-06-11 01:06:48 +00:00
mei MEI stands for Mathematical Expression Interpreter. 2012-07-07 15:15:08 +00:00
minc Update to version 1.5.1 [1] 2012-07-20 16:32:07 +00:00
minc2 Upgrade to 2.2.00. 2013-07-10 13:59:11 +00:00
mol2ps - Update to 0.4a 2013-07-22 15:28:03 +00:00
mpb . add license (GPLv2); 2013-06-20 13:35:33 +00:00
mpqc Rectify USE_TEX to support both of teTeX and TeXLive. 2013-05-11 17:58:55 +00:00
mpqc-mpich
ncs Rectify USE_TEX to support both of teTeX and TeXLive. 2013-05-11 17:58:55 +00:00
netcdf Convert science to new options framework 2013-04-28 22:08:22 +00:00
netcdf-ftn
netcdf3-ftn
netcdf4 - Update to 7.31.0 2013-07-11 16:26:26 +00:00
nifticlib - Try to unbreak parallel builds (-jX) 2013-07-28 08:32:18 +00:00
omnetpp Convert science to new options framework 2013-04-28 22:08:22 +00:00
openbabel - convert USE_CMAKE to USES 2013-03-22 20:06:14 +00:00
ovt Decommissioning java 1.5 (EOLed since October 2009): 2012-12-10 13:43:43 +00:00
p5-Algorithm-SVMLight - Assign clsung's p5- ports to perl@ 2012-05-01 01:47:10 +00:00
p5-Chemistry-3DBuilder - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Bond-Find - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Canonicalize - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-Mopac - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-PDB - Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or 2012-06-10 18:42:48 +00:00
p5-Chemistry-File-SLN - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-SMARTS - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-SMILES - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-VRML - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-File-XYZ - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-FormulaPattern - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-InternalCoords - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Isotope
p5-Chemistry-MacroMol - Trim Makefile headers 2012-12-07 07:13:56 +00:00
p5-Chemistry-MidasPattern - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Mok - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Mol - Trim Makefile headers 2012-12-06 02:12:52 +00:00
p5-Chemistry-Pattern - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Reaction - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Chemistry-Ring - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Geo-BUFR - Update to 1.23 2013-05-15 00:29:31 +00:00
p5-Geo-Coordinates-Converter Cleanup supporting perl version 5.8 and 5.10, 2012-12-17 06:15:27 +00:00
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS Update to 0.011. 2013-01-29 08:50:49 +00:00
p5-PerlMol - Remove SITE_PERL from *_DEPENDS 2012-06-28 17:51:57 +00:00
p5-Physics-Unit - Update to 0.53 2012-05-26 07:29:57 +00:00
paje . portlint: use tab (not space) to make indentation; 2013-06-20 13:43:03 +00:00
paraview Convert science to new options framework 2013-04-28 22:08:22 +00:00
peekabot Mark as broken: does not build 2013-07-24 06:45:04 +00:00
pnetcdf - Update to 1.3.1 2012-09-30 04:19:04 +00:00
psi3 - Fix all cases of 'No newline at end of file' in ports tree 2013-02-01 15:04:00 +00:00
psychopy - Update to 1.77.00 2013-05-16 13:04:09 +00:00
py-coards Clean up. 2013-06-16 08:29:46 +00:00
py-DendroPy Update to 3.12.0 2012-07-18 06:21:15 +00:00
py-h5py
py-hcluster - update png to 1.5.10 2012-06-01 05:26:28 +00:00
py-mdp - Update to 3.2 2012-08-08 21:27:15 +00:00
py-mlpy
py-netCDF4 - Update to version 1.0.4 2013-04-30 00:39:35 +00:00
py-obspy - Update COMMENT and pkg-descr 2013-07-18 23:56:55 +00:00
py-paida - Update *_DEPENDS on x11-toolkits/py-tkinter after _tkinter.so relocation 2013-03-02 22:32:48 +00:00
py-pydicom Fix typos and make small modifications in COMMENT (according to Porter's 2012-08-03 15:54:35 +00:00
py-scikit-learn Update to version 0.13.1. 2013-03-11 14:11:26 +00:00
py-scimath - Update to 4.1.2 2013-07-23 04:27:27 +00:00
py-scipy - let it build with python3 too 2013-07-22 12:44:32 +00:00
py-ws2300 - Update to 1.7 [1] 2012-12-09 13:19:39 +00:00
pybrain
pycdf
pynn - Update to 0.7.5 2013-03-02 05:49:40 +00:00
pyteomics - Update to 2.1.5 and [1]: 2013-05-11 07:42:20 +00:00
pyteomics.biolccc Allow to build with python3 2013-05-11 07:41:46 +00:00
qcl
qtresistors - Changed my email 2013-07-22 14:34:22 +00:00
R-cran-AMORE Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-bayesm Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-DCluster Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-e1071 Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-eco Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-Epi Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-epicalc Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-snow Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
R-cran-som Update math/R to 3.0.1-patched, and adjust dependent ports; 2013-05-28 15:15:05 +00:00
ruby-dcl - Update to 1.7.0. 2012-07-25 01:23:45 +00:00
ruby-gphys - Update to 1.2.2 2013-01-22 03:31:11 +00:00
ruby-netcdf - update to 0.6.6 2012-03-08 04:34:40 +00:00
rubygem-ai4r - Reset maintainer after no response to mail since Jan 2013 2013-07-27 16:06:01 +00:00
silo Convert USE_NCURSES by USES=ncurses 2013-05-06 15:34:17 +00:00
simlib
step Update the KDE Software Compilation to 4.10.5. 2013-07-04 23:34:32 +00:00
svmlight
szip . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 2013-06-20 13:01:27 +00:00
udunits - Remove unnecessary USE_PERL5 2012-05-06 09:35:33 +00:00
v_sim - Correct DOCS handling 2013-06-14 12:00:22 +00:00
veusz - Update to 1.17.1 2013-06-19 13:53:12 +00:00
vmd Fix minor nit: use the canconical FreeBSD.org form for email addresses. 2013-03-17 16:44:03 +00:00
voro++ - add new port: science/voro++ 2013-04-16 22:46:18 +00:00
x11iraf Register CONFLICTS 2012-06-11 09:52:17 +00:00
xfce4-equake-plugin Equake is a panel plugin which monitors and displays earthquakes each time 2013-07-22 18:02:57 +00:00
xmakemol Convert from USE_MOTIF to USES=motif 2013-07-10 07:00:44 +00:00
xmds Convert science to new options framework 2013-04-28 22:08:22 +00:00
Makefile KDE3 and QT3 expired on 2013-07-01, remove these ports. 2013-07-26 19:19:20 +00:00