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Renato Botelho 5d19d83aa6 Bioperl-run contain modules that provides a PERL interface to various 
bioinformatics applications. This allows various applications to be used
with common Bioperl objects.

WWW: http://bioperl.org/

PR:		ports/93674
Submitted by:	Mauricio Herrera Cuadra <mauricio@arareko.net>
2006-05-02 21:30:08 +00:00
..
ariadne SHA256ify 2006-01-22 08:34:46 +00:00
artemis - Fix fetch problems 2005-12-05 16:57:26 +00:00
avida - Add SHA256 2005-11-24 00:04:00 +00:00
babel - Add SHA256 2005-11-24 00:04:00 +00:00
belvu Add belvu 2.29, a viewer for multiple sequence alignments. 2006-03-15 10:24:57 +00:00
biojava BROKEN: Does not compile 2006-04-22 22:10:17 +00:00
blast - Update to 2.0.20060101 2006-01-14 19:36:19 +00:00
blat Add blat 33, a fast tool for local sequence similarity searches. 2006-03-15 10:26:12 +00:00
chemeq - Resurrect, update to version 1.5 (literally 1.50 since I wanted to avoid 2006-01-19 19:47:59 +00:00
clustalw SHA256ify 2006-01-22 08:34:46 +00:00
coalesce - Add SHA256 2005-11-24 00:04:00 +00:00
crimap SHA256ify 2006-01-22 08:34:46 +00:00
distribfold Use SUB_FILES for pkg-message 2006-04-01 12:34:24 +00:00
dna-qc SHA256ify (manually done and checked) 2006-01-22 09:54:26 +00:00
dotter Add dotter 20021204 # last modified date in FTP server, a viewer for 2006-03-15 10:35:24 +00:00
embassy For EMBOSS: 2006-03-31 09:43:21 +00:00
emboss For EMBOSS: 2006-03-31 09:43:21 +00:00
fasta Use SUB_FILES for pkg-message 2006-04-01 12:34:24 +00:00
fasta3 - Update to 34.t25.d5 2006-03-20 22:23:24 +00:00
fastdnaml - Add SHA256 2005-11-24 00:04:00 +00:00
finchtv SHA256ify 2006-01-22 08:34:46 +00:00
fluctuate - Add SHA256 2005-11-24 00:04:00 +00:00
garlic Update to 1.5 2006-03-15 08:10:49 +00:00
genpak - Add SHA256 2005-11-24 00:04:00 +00:00
gff2ps SHA256ify 2006-01-22 08:34:46 +00:00
gperiodic - Add SHA256 2005-11-24 00:04:00 +00:00
grappa SHA256ify 2006-01-22 08:34:46 +00:00
hmmer SHA256ify 2006-01-22 08:34:46 +00:00
jalview Jalview is a multiple alignment editor written in Java. It is used widely in a 2006-02-13 09:42:13 +00:00
kinemage Reset jeremy@external.org who has not responded to email asking about 2006-04-05 05:46:33 +00:00
L-Breeder - Update graphics/libglut to 6.4.1. 2006-01-12 12:54:32 +00:00
lagan Add lagan 1.2, efficient tools for large-scale multiple alignments of 2006-03-16 22:31:26 +00:00
lamarc With portmgr hat on, reset inactive maintainer. These ports are now up 2004-11-20 08:09:49 +00:00
libgenome Conversion to a single libtool environment. 2006-02-23 10:40:44 +00:00
lsysexp SHA256ify 2006-01-22 08:34:46 +00:00
mafft - Update to 5.743 2006-03-19 12:59:16 +00:00
migrate - Add SHA256 2005-11-24 00:04:00 +00:00
molden - Update graphics/libglut to 6.4.1. 2006-01-12 12:54:32 +00:00
mopac Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking about 2006-04-05 06:13:46 +00:00
nab SHA256ify 2006-01-22 08:34:46 +00:00
ncbi-toolkit Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry 2006-01-22 01:29:46 +00:00
ortep3 Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking about 2006-04-05 06:13:46 +00:00
p5-AcePerl SHA256ify 2006-01-22 08:34:46 +00:00
p5-Bio-ASN1-EntrezGene SHA256ify 2006-01-22 08:34:46 +00:00
p5-Bio-Das SHA256ify 2006-01-22 08:34:46 +00:00
p5-bioperl SHA256ify 2006-01-22 08:34:46 +00:00
p5-bioperl-devel Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry 2006-01-22 01:29:46 +00:00
p5-bioperl-run Bioperl-run contain modules that provides a PERL interface to various 2006-05-02 21:30:08 +00:00
paml Update to 3.14b 2005-11-10 01:21:42 +00:00
phylip Put PORTEPOCH back. 2006-02-09 01:17:59 +00:00
platon Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking about 2006-04-05 06:13:46 +00:00
povchem - Drop old povchem.c checksum 2005-11-24 00:02:29 +00:00
primer3 SHA256ify 2006-01-22 08:34:46 +00:00
psi88 Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking about 2006-04-05 06:13:46 +00:00
py-biopython Update to 1.41 2005-11-11 01:15:35 +00:00
pymol SHA256ify 2006-01-22 08:34:46 +00:00
rasmol - Add SHA256 2005-11-24 00:04:00 +00:00
recombine - Add SHA256 2005-11-24 00:04:00 +00:00
ruby-bio - Update to 1.0.0 2006-04-25 22:09:29 +00:00
seaview - Update to 2006.02.13 2006-04-05 01:58:03 +00:00
seqio SHA256ify 2006-01-22 08:34:46 +00:00
sim4 - Add SHA256 2005-11-24 00:04:00 +00:00
t_coffee Update to 3.27. 2006-02-10 09:45:28 +00:00
tinker - Add SHA256 2005-11-24 00:04:00 +00:00
treepuzzle SHA256ify 2006-01-22 08:34:46 +00:00
treeviewx Update to 0.5.1 2005-12-06 02:00:55 +00:00
tRNAscan-SE SHA256ify 2006-01-22 08:34:46 +00:00
wise SHA256ify 2006-01-22 08:34:46 +00:00
xdrawchem BROKEN: Configure fails 2006-02-20 01:46:03 +00:00
xmolwt Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking about 2006-04-05 06:13:46 +00:00
Makefile Bioperl-run contain modules that provides a PERL interface to various 2006-05-02 21:30:08 +00:00