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freebsd-ports/biology
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Martin Wilke 5da99a81fe p5-Bio-MAGETAB contains the core MAGE-TAB Utilities Perl modules. This 
is a beta release. All functions have now been implemented and most
have test suites; the exceptions include the modules involved in
export of MAGE-TAB documents, which are still a little experimental in
nature. The API is mostly finalised (and fully documented), but some
details may yet change where necessary to improve usability.

WWW: http://search.cpan.org/dist/Bio-MAGETAB/

PR:		ports/136021
Submitted by:	Wen Heping <wenheping at gmail.com>
2009-07-01 09:03:28 +00:00
..
adun - fix build for custom LOCALBASE in UL subdir 2009-06-02 02:33:05 +00:00
ariadne
artemis Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
avida bump PORTREVISION after cmake update 2009-03-24 19:13:32 +00:00
babel
belvu
biococoa - add LICENSE: 2009-01-16 16:01:05 +00:00
biojava - Update to 1.7 2009-05-01 09:33:42 +00:00
blast - Remove conditional checks relevant only on FreeBSD 5.x and older 2009-01-05 17:27:29 +00:00
blat - Remove USE_GCC where it can be satisfied with base compiler on following 2008-07-25 14:34:52 +00:00
boinc-simap - Remove conditional checks relevant only on FreeBSD 5.x and older 2009-01-05 17:27:29 +00:00
chemeq Migration from bison 1.x to 2.x 2007-10-17 10:13:01 +00:00
clustalw - Update to 2.0.6 2008-04-29 12:58:52 +00:00
consed Welcome to the new linux ports infrastructure which allows using 2009-03-19 17:28:51 +00:00
crimap
crux Update to Crux 1.1.0. 2009-06-21 06:18:51 +00:00
distribfold
dna-qc
dotter Umark BROKEN, stale distfile removed from ftp-master. 2008-01-27 11:26:35 +00:00
embassy - Update to 6.0.0 2009-06-16 22:42:34 +00:00
emboss - Update to 0.1.24 2009-03-14 15:17:06 +00:00
fasta - Update download location 2009-01-31 22:45:38 +00:00
fasta3 - Update to 35.4.7 [1] 2009-06-09 07:53:37 +00:00
fastdnaml
finchtv
fluctuate
garlic - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
genpak - Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default MAKE_ENV 2008-07-25 09:08:42 +00:00
gff2ps Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
gmap Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 2008-08-21 06:18:49 +00:00
gperiodic Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
grappa
hmmer - Update download locations, update WWW 2009-02-01 08:17:14 +00:00
jalview Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
kinemage - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
L-Breeder Reset dyeske@gmail.com at his request. 2009-02-02 23:44:01 +00:00
lagan - Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default MAKE_ENV 2008-07-25 09:08:42 +00:00
lamarc - Mark most of my ports MAKE_JOBS_SAFE=yes 2009-05-16 06:27:56 +00:00
libgenome Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 2008-08-21 06:18:49 +00:00
libsbml LibSBML is an open-source programming library to help you read, write, 2009-05-28 23:36:10 +00:00
linux-foldingathome - Fix typo in WWW 2007-10-04 07:28:40 +00:00
lsysexp Reset dyeske@gmail.com at his request. 2009-02-02 23:44:01 +00:00
mafft - Update download locations, update WWW 2009-02-04 03:31:00 +00:00
mapm3 MAPMAKER/EXP is a linkage analysis package designed to help construct primary 2008-04-06 04:49:05 +00:00
migrate - Update to 3.0.3 2009-01-14 16:00:34 +00:00
molden - Unbreak distinfo after portrevision bump 2009-01-09 19:31:49 +00:00
mopac Add -lf2c, this is the correct dependency. Bump portrevision. 2008-08-22 22:20:05 +00:00
mrbayes Fix LIB_DEPENDS on devel/readline: its sh lib version was bumped recently from 2009-05-12 11:28:17 +00:00
mummer MUMmer is a modular system for the rapid whole genome alignment of finished 2007-12-14 20:54:47 +00:00
muscle - Update maintainer's email address 2008-05-17 16:52:34 +00:00
ncbi-toolkit - Update to 2009.03.01 2009-03-28 16:59:39 +00:00
njplot Convert most of remaining ports that depend on xorg-libraries to 2009-06-09 15:33:28 +00:00
ortep3 Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
p5-AcePerl - Mark most of my ports MAKE_JOBS_SAFE=yes 2009-05-16 06:27:56 +00:00
p5-Bio-ASN1-EntrezGene - Take advantage of CPAN macro from bsd.sites.mk, change ${MASTER_SITE_PERL_CPAN} to CPAN. 2008-04-17 14:30:31 +00:00
p5-Bio-Das - Update to 1.11 2009-06-08 09:30:07 +00:00
p5-Bio-Glite Bio::Glite is an interface to G-language Genome Analysis Environment 2009-04-02 18:24:59 +00:00
p5-Bio-Graphics - Update to 1.95 2009-06-02 21:34:06 +00:00
p5-Bio-MAGETAB p5-Bio-MAGETAB contains the core MAGE-TAB Utilities Perl modules. This 2009-07-01 09:03:28 +00:00
p5-Bio-Phylo Reset aaron's port maintainerships due to many maintainer-timeouts. 2008-04-29 05:27:09 +00:00
p5-bioperl Remove variable PERL_VER from the ports tree at all - because 2009-03-05 17:56:24 +00:00
p5-bioperl-run - Update to 1.6.1 2009-03-19 20:54:05 +00:00
paml - Update to 4.2b 2009-03-02 19:02:48 +00:00
phd2fasta Teach the building cluster that these ports are not to be build 2008-05-25 23:05:10 +00:00
phrap Teach the building cluster that these ports are not to be build 2008-05-25 23:05:10 +00:00
phred Teach the building cluster that these ports are not to be build 2008-05-25 23:05:10 +00:00
phylip - Update X.org ports to 7.4+ (few ports are more recent than the katamari). 2009-01-23 16:28:36 +00:00
platon Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
povchem
primer3 - Update to 1.1.3 2008-04-04 20:46:35 +00:00
protomol - Update X.org ports to 7.4+ (few ports are more recent than the katamari). 2009-01-23 16:28:36 +00:00
psi88 Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
py-biopython - Update to 1.48 2008-10-11 15:26:33 +00:00
pycogent PyCogent is a software library for genomic biology. It is a fully integrated 2009-06-22 12:46:56 +00:00
pymol - Update lang/python26 and make Python 2.6.2 to the default Python version 2009-06-08 22:30:55 +00:00
rasmol Convert most of remaining ports that depend on xorg-libraries to 2009-06-09 15:33:28 +00:00
recombine
ruby-bio - Update to 1.1.0 2007-10-24 01:38:51 +00:00
seaview - Remove unneeded dependency from gtk12/gtk20 [1] 2008-04-19 17:56:05 +00:00
seqio - respect NOPORTEXAMPLES/NOPORTDOCS and fix plist 2008-07-12 06:28:25 +00:00
sim4
ssaha - Fix plist files installation. 2008-06-21 02:46:21 +00:00
t_coffee - Respect PORTDOCS/PORTEXAMPLES 2008-09-09 13:43:15 +00:00
tinker Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
treepuzzle Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 2008-08-21 06:18:49 +00:00
treeviewx Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
tRNAscan-SE - Update MASTER_SITES and WWW: line 2008-05-22 00:49:42 +00:00
wise
xdrawchem Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 2008-08-21 06:18:49 +00:00
xmolwt Bump portrevision due to upgrade of devel/gettext. 2008-06-06 13:08:29 +00:00
Makefile p5-Bio-MAGETAB contains the core MAGE-TAB Utilities Perl modules. This 2009-07-01 09:03:28 +00:00