freebsd-ports/biology
Thomas Zander 8326165d33 Update to upstream version 36
PR:		196339
Submitted by:	koue@chaosophia.net
2015-01-01 18:17:53 +00:00
..
ariadne Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
artemis Cleanup plist 2014-10-20 07:10:48 +00:00
avida Cleanup plist 2014-12-20 17:27:08 +00:00
babel Rename biology/ patch-xy patches to reflect the files they modify. 2014-07-28 14:22:16 +00:00
biococoa Cleanup plist 2014-10-20 07:10:48 +00:00
biojava - add stage support 2014-06-01 10:37:22 +00:00
blat Update to upstream version 36 2015-01-01 18:17:53 +00:00
chemeq Stage support 2014-01-18 15:55:42 +00:00
clustalw Multiple ports: reset maintainers 2014-05-26 02:33:38 +00:00
consed update ports: 2014-08-23 18:04:58 +00:00
crux Cleanup plist 2014-10-20 07:10:48 +00:00
emboss Bump portrevision after png update 2014-12-25 20:54:41 +00:00
fasta - Add staging support 2014-03-24 09:01:39 +00:00
fasta3 Cleanup plist 2014-10-20 07:10:48 +00:00
fastdnaml Cleanup plist 2014-10-20 07:10:48 +00:00
fluctuate Support staging 2014-02-16 11:35:00 +00:00
garlic Cleanup plist 2014-10-20 07:10:48 +00:00
gff2ps Add staging support 2014-03-23 17:43:41 +00:00
gmap Fix MASTER_SITES 2014-09-05 09:25:45 +00:00
gperiodic Add staging support 2014-03-23 18:09:23 +00:00
grappa - Respect CC/CFLAGS 2013-12-20 13:27:13 +00:00
hmmer Cleanup plist 2014-10-20 07:10:48 +00:00
htslib HTSlib is an implementation of a unified C library for accessing common file 2014-12-14 22:35:07 +00:00
iolib Cleanup plist 2014-10-20 07:10:48 +00:00
jalview Cleanup plist 2014-10-20 07:10:48 +00:00
lagan
lamarc - rename AL2 to APACHE20 in Mk/bsd.licenses.db.mk 2013-12-30 20:55:18 +00:00
libsbml - Update to 5.11.0 2014-12-30 12:57:53 +00:00
linux-foldingathome Cleanup plist 2014-12-20 17:27:08 +00:00
mafft Cleanup plist 2014-10-20 07:10:48 +00:00
mapm3 - Fix build with clang 2014-01-12 19:07:28 +00:00
migrate - Update to 3.6.5 2014-12-06 14:54:48 +00:00
molden Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
mopac - Upadate biology/mopac to version 1.15 2014-12-16 22:10:23 +00:00
mrbayes Fix build on -current by un-clobbering LDFLAGS. Also, don't 2014-08-15 16:37:37 +00:00
mummer Cleanup plist 2014-10-20 07:10:48 +00:00
muscle Update to 3.8.31. 2014-06-17 21:36:06 +00:00
ncbi-blast+ Fix PKGNAMEPREFIX of biology/ncbi-blast+, so that the resulting package is 2014-12-31 00:31:55 +00:00
ncbi-toolkit Cleanup plist 2014-10-20 07:10:48 +00:00
njplot - add stage support 2014-06-01 11:26:39 +00:00
ortep3 Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
p5-AcePerl Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Bio-ASN1-EntrezGene Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Bio-Das Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Bio-Das-Lite Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Bio-GFF3 Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Bio-Glite Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Bio-Graphics - Update to 2.39 2014-12-07 07:44:06 +00:00
p5-Bio-MAGETAB Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Bio-NEXUS Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-Bio-Phylo - Update to 0.58 2014-12-07 04:41:47 +00:00
p5-Bio-SCF Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-bioperl Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
p5-bioperl-run Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
paml Cleanup plist 2014-10-20 07:10:48 +00:00
phrap - Fix various distinfo errors 2014-10-16 08:55:30 +00:00
phred update ports: 2014-08-23 18:04:58 +00:00
phylip - Update to version 3.696 2014-11-02 14:13:59 +00:00
phyml Convert to USES=autoreconf 2014-12-28 19:14:13 +00:00
platon Cleanup plist 2014-10-20 07:10:48 +00:00
plink Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
plinkseq - Update to 0.10 2014-10-12 03:16:10 +00:00
povchem Cleanup plist 2014-12-20 17:27:08 +00:00
primer3 Quote ${CC} and similar variables in MAKE_ARGS. 2014-05-20 19:32:39 +00:00
protomol Bump portrevision after png update 2014-12-25 20:54:41 +00:00
psi88 Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
py-biopython - Convert ports from benchmarks/ and biology/ to new USES=python 2014-10-19 07:38:11 +00:00
pycogent - Convert ports from benchmarks/ and biology/ to new USES=python 2014-10-19 07:38:11 +00:00
pyfasta - Convert ports from benchmarks/ and biology/ to new USES=python 2014-10-19 07:38:11 +00:00
python-nexus - Convert ports from benchmarks/ and biology/ to new USES=python 2014-10-19 07:38:11 +00:00
recombine - Support staging 2014-02-16 11:39:42 +00:00
ruby-bio Cleanup plist 2014-10-20 07:10:48 +00:00
samtools Samtools implements various utilities for post-processing alignments in the 2014-12-15 21:59:19 +00:00
seaview Change my non-FreeBSD MAINTAINER mail to bofh@ 2014-12-24 00:14:11 +00:00
seqan Cleanup plist 2014-10-20 07:10:48 +00:00
seqio Support staging 2014-02-16 11:42:09 +00:00
seqtools biology/seqtools: 4.30 -> 4.31 2014-12-13 18:10:31 +00:00
sim4 Support staging 2014-02-16 11:43:07 +00:00
ssaha Cleanup plist 2014-12-20 17:27:08 +00:00
t_coffee Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
tinker Cleanup plist 2014-10-20 07:10:48 +00:00
treepuzzle
treeviewx Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
tRNAscan-SE Convert a bunch of EXTRACT_SUFX=... into USES=tar:... 2014-07-29 19:11:51 +00:00
ugene Update to version 1.15.0. 2014-12-03 01:40:54 +00:00
velvet Change the way Perl modules are installed, update the default Perl to 5.18. 2014-11-26 13:08:24 +00:00
wise Cleanup plist 2014-12-20 17:27:08 +00:00
xmolwt devel/glib12 x11-toolkits/gtk12: 2014-09-13 15:11:27 +00:00
Makefile Remove expired ports: 2015-01-01 01:13:11 +00:00