43 lines
1,010 B
Makefile
43 lines
1,010 B
Makefile
PORTNAME= MMseqs2
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DISTVERSION= 13-45111
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PORTREVISION= 2
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CATEGORIES= biology
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Ultra fast and sensitive sequence search and clustering suite
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LICENSE= GPLv3
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LICENSE_FILE= ${WRKSRC}/LICENSE.md
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NOT_FOR_ARCHS= armv6 armv7 i386 mips powerpc powerpcspe
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LIB_DEPENDS= libzstd.so:archivers/zstd
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USES= cmake perl5 shebangfix
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USE_GITHUB= yes
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USE_PERL5= build
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SHEBANG_GLOB= *.sh
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GH_ACCOUNT= soedinglab
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CMAKE_ARGS+= -DUSE_SYSTEM_ZSTD:BOOL=ON -DDISABLE_IPS4O:BOOL=ON
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LDFLAGS+= -lpthread
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PLIST_FILES= bin/mmseqs ${DATADIR}/bash-completion.sh
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.include <bsd.port.pre.mk>
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.if ${ARCH} == "amd64" && empty(CFLAGS:M*march=native*)
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# Need at least SSE2 for decent performance. x86-64 groups SSE2 with other
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# common features in low-end AMD64 CPUs.
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CFLAGS+= -march=x86-64
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.endif
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post-patch:
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@${REINPLACE_CMD} -e 's|MMSEQS_HOME/util|${DATADIR}|g' \
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${WRKSRC}/src/commons/Application.cpp
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post-stage:
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${MV} ${STAGEDIR}${PREFIX}/util ${STAGEDIR}${DATADIR}
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.include <bsd.port.post.mk>
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