..
ariadne
6 ports categories: Remove $PTHREAD_LIBS
2015-03-24 16:01:21 +00:00
artemis
- Add empty directory to plist
2015-03-11 14:41:53 +00:00
avida
Cleanup plist
2014-12-20 17:27:08 +00:00
babel
Rename biology/ patch-xy patches to reflect the files they modify.
2014-07-28 14:22:16 +00:00
biococoa
Convert bsd.gnustep.mk to USES=gnustep
2015-04-09 07:44:41 +00:00
biojava
- add stage support
2014-06-01 10:37:22 +00:00
blat
Update to upstream version 36
2015-01-01 18:17:53 +00:00
chemeq
clustalw
Multiple ports: reset maintainers
2014-05-26 02:33:38 +00:00
consed
Mark as broken unfetchable ports
2015-04-05 17:55:35 +00:00
crux
Cleanup plist
2014-10-20 07:10:48 +00:00
emboss
Fix packaging as a user (pkg already takes care of credentials)
2015-03-18 21:52:19 +00:00
fasta
fasta3
Cleanup plist
2014-10-20 07:10:48 +00:00
fastdnaml
Cleanup plist
2014-10-20 07:10:48 +00:00
fluctuate
garlic
Cleanup plist
2014-10-20 07:10:48 +00:00
gff2ps
gmap
Fix MASTER_SITES
2014-09-05 09:25:45 +00:00
gperiodic
grappa
hmmer
- Remove deprecated option
2015-04-02 15:41:31 +00:00
htslib
biology/htslib: update 1.1 -> 1.2.1
2015-03-06 12:45:22 +00:00
iolib
- Update to 1.13.10
2015-03-04 13:17:46 +00:00
jalview
Cleanup plist
2014-10-20 07:10:48 +00:00
lagan
lamarc
libsbml
- Convert USE_PYTHON -> USES leftovers missed in the previous commits
2015-01-04 08:23:23 +00:00
linux-foldingathome
Cleanup plist
2014-12-20 17:27:08 +00:00
mafft
6 ports categories: Remove $PTHREAD_LIBS
2015-03-24 16:01:21 +00:00
mapm3
migrate
Mark as broken unfetchable ports
2015-04-05 17:55:35 +00:00
molden
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
mopac
- Upadate biology/mopac to version 1.15
2014-12-16 22:10:23 +00:00
mrbayes
Fix build on -current by un-clobbering LDFLAGS. Also, don't
2014-08-15 16:37:37 +00:00
mummer
Cleanup plist
2014-10-20 07:10:48 +00:00
muscle
Update to 3.8.31.
2014-06-17 21:36:06 +00:00
ncbi-blast+
Mark as broken unfetchable ports
2015-04-05 17:55:35 +00:00
ncbi-toolkit
Cleanup plist
2014-10-20 07:10:48 +00:00
njplot
Mark as broken unfetchable ports
2015-04-05 17:55:35 +00:00
ortep3
Mark as broken unfetchable ports
2015-04-05 17:55:35 +00:00
p5-AcePerl
- Add LICENSE
2015-03-28 17:20:45 +00:00
p5-Bio-ASN1-EntrezGene
biology/p5-Bio-ASN1-EntrezGene: bump PORTEPOCH
2015-04-11 15:19:03 +00:00
p5-Bio-Das
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Bio-Das-Lite
Remove TEST dependency on p5-Test-Simple when the version in core is
2015-02-26 16:54:41 +00:00
p5-Bio-GFF3
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Bio-Glite
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Bio-Graphics
Some OCD cleanups on some of the perl@ ports.
2015-03-12 23:00:02 +00:00
p5-Bio-MAGETAB
Some OCD cleanups on some of the perl@ ports.
2015-03-12 23:00:02 +00:00
p5-Bio-NEXUS
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-Bio-Phylo
- Update to 0.58
2014-12-07 04:41:47 +00:00
p5-Bio-SCF
Change the way Perl modules are installed, update the default Perl to 5.18.
2014-11-26 13:08:24 +00:00
p5-bioperl
Some OCD cleanups on some of the perl@ ports.
2015-03-12 23:00:02 +00:00
p5-bioperl-run
For the new USE_GITHUB with only GH_TAGNAME set default DISTNAME to
2015-03-20 20:07:50 +00:00
paml
Update biology/paml to 4.8a and unbreak.
2015-04-10 15:39:01 +00:00
phrap
- Fix various distinfo errors
2014-10-16 08:55:30 +00:00
phred
update ports:
2014-08-23 18:04:58 +00:00
phylip
- Update to version 3.696
2014-11-02 14:13:59 +00:00
phyml
Convert to USES=autoreconf
2014-12-28 19:14:13 +00:00
platon
biology/platon: Upgrade from 05 MAR 2015 => 30 MAR 2015 to unbreak
2015-04-11 15:41:22 +00:00
plink
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
plinkseq
- Update to 0.10
2014-10-12 03:16:10 +00:00
povchem
Mark as broken unfetchable ports
2015-04-05 17:55:35 +00:00
primer3
Quote ${CC} and similar variables in MAKE_ARGS.
2014-05-20 19:32:39 +00:00
protomol
Bump portrevision after png update
2014-12-25 20:54:41 +00:00
psi88
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
py-biopython
biology/py-biopython:
2015-01-19 20:21:12 +00:00
pycogent
- Convert ports from benchmarks/ and biology/ to new USES=python
2014-10-19 07:38:11 +00:00
pyfasta
- Convert ports from benchmarks/ and biology/ to new USES=python
2014-10-19 07:38:11 +00:00
python-nexus
- Convert ports from benchmarks/ and biology/ to new USES=python
2014-10-19 07:38:11 +00:00
recombine
ruby-bio
biology/ruby-bio: mark broken with ruby 2.2
2015-04-03 13:50:38 +00:00
samtools
biology/samtools: update 1.1 -> 1.2
2015-03-06 12:53:58 +00:00
seaview
biology/seaview: Unbreak -- it fetches fine
2015-04-11 15:49:57 +00:00
seqan
biology/segan: Limit GCC to 4.8 while waiting for update
2015-03-21 11:53:27 +00:00
seqio
seqtools
biology/seqtools: 4.32 -> 4.33
2015-03-31 18:04:25 +00:00
sim4
ssaha
Cleanup plist
2014-12-20 17:27:08 +00:00
t_coffee
Remove Authors from pkg-descr
2015-03-02 23:09:43 +00:00
tinker
Update from 7.1.1 to 7.1.2.
2015-03-11 13:44:21 +00:00
treepuzzle
treeviewx
Update the default version of GCC in the Ports Collection from GCC 4.7.4
2014-09-10 20:50:31 +00:00
tRNAscan-SE
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
2014-07-29 19:11:51 +00:00
ugene
- Update to version 1.16.1
2015-03-23 01:44:43 +00:00
velvet
Designatate 4 ports as unsafe for parallel building
2015-01-19 17:43:57 +00:00
wise
Cleanup plist
2014-12-20 17:27:08 +00:00
xmolwt
devel/glib12 x11-toolkits/gtk12:
2014-09-13 15:11:27 +00:00
Makefile
Remove expired ports:
2015-01-01 01:13:11 +00:00