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freebsd-ports/biology
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Erwin Lansing 9f3d7499d2 Fix PKGORIGIN 
Submitted by:	pointyhat
2009-08-08 13:26:13 +00:00
..
adun - fix PORTSCOUT 2009-07-06 07:29:12 +00:00
ariadne
artemis
avida bump PORTREVISION after cmake update 2009-03-24 19:13:32 +00:00
babel
belvu
biococoa - add LICENSE: 2009-01-16 16:01:05 +00:00
biojava - Update to 1.7 2009-05-01 09:33:42 +00:00
blast - Remove conditional checks relevant only on FreeBSD 5.x and older 2009-01-05 17:27:29 +00:00
blat - Remove USE_GCC where it can be satisfied with base compiler on following 2008-07-25 14:34:52 +00:00
boinc-simap - Remove conditional checks relevant only on FreeBSD 5.x and older 2009-01-05 17:27:29 +00:00
chemeq
clustalw
consed Welcome to the new linux ports infrastructure which allows using 2009-03-19 17:28:51 +00:00
crimap
crux Fix PKGORIGIN 2009-08-08 13:26:13 +00:00
distribfold
dna-qc
dotter
embassy - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
emboss -Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22. 2009-08-02 19:36:34 +00:00
fasta - Update download location 2009-01-31 22:45:38 +00:00
fasta3 - Update to 35.4.7 [1] 2009-06-09 07:53:37 +00:00
fastdnaml
finchtv
fluctuate
garlic
genpak - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
gff2ps
gmap Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 2008-08-21 06:18:49 +00:00
gperiodic - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
grappa
hmmer - Update download locations, update WWW 2009-02-01 08:17:14 +00:00
jalview
kinemage
L-Breeder - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
lagan - Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default MAKE_ENV 2008-07-25 09:08:42 +00:00
lamarc - Mark most of my ports MAKE_JOBS_SAFE=yes 2009-05-16 06:27:56 +00:00
libgenome -Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22. 2009-08-02 19:36:34 +00:00
libsbml LibSBML is an open-source programming library to help you read, write, 2009-05-28 23:36:10 +00:00
linux-foldingathome
lsysexp - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
mafft - Update download locations, update WWW 2009-02-04 03:31:00 +00:00
mapm3
migrate - Update to 3.0.3 2009-01-14 16:00:34 +00:00
molden - Unbreak fetch 2009-08-02 19:59:03 +00:00
mopac Add -lf2c, this is the correct dependency. Bump portrevision. 2008-08-22 22:20:05 +00:00
mrbayes Fix LIB_DEPENDS on devel/readline: its sh lib version was bumped recently from 2009-05-12 11:28:17 +00:00
mummer
muscle
ncbi-toolkit - Update to 2009.03.01 2009-03-28 16:59:39 +00:00
njplot Convert most of remaining ports that depend on xorg-libraries to 2009-06-09 15:33:28 +00:00
ortep3 Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
p5-AcePerl - Flip MAKE_JOBS_SAFE to MAKE_JOBS_UNSAFE 2009-07-07 22:11:07 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
p5-Bio-Glite Bio::Glite is an interface to G-language Genome Analysis Environment 2009-04-02 18:24:59 +00:00
p5-Bio-Graphics - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
p5-Bio-MAGETAB Utilize %%SITE_PERL%% and %%PERL_ARCH%% in pkg-plists 2009-07-30 23:04:49 +00:00
p5-Bio-Phylo - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
p5-bioperl - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
p5-bioperl-run - Relax check on bioperl version; people keep forgetting to update this check 2009-08-02 20:00:08 +00:00
paml - Update to 4.2b 2009-03-02 19:02:48 +00:00
phd2fasta
phrap
phred
phylip - Update X.org ports to 7.4+ (few ports are more recent than the katamari). 2009-01-23 16:28:36 +00:00
phyml PhyML is a software that estimates maximum likelihood phylogenies from 2009-07-21 01:10:13 +00:00
platon Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
povchem
primer3
protomol - update to jpeg7 2009-07-18 11:11:29 +00:00
psi88 Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
py-biopython - Update to 1.48 2008-10-11 15:26:33 +00:00
pycogent PyCogent is a software library for genomic biology. It is a fully integrated 2009-06-22 12:46:56 +00:00
pymol - Update lang/python26 and make Python 2.6.2 to the default Python version 2009-06-08 22:30:55 +00:00
rasmol Convert most of remaining ports that depend on xorg-libraries to 2009-06-09 15:33:28 +00:00
recombine
ruby-bio
seaview - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
seqio
sim4
ssaha
t_coffee - Respect PORTDOCS/PORTEXAMPLES 2008-09-09 13:43:15 +00:00
tinker Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
treepuzzle Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 2008-08-21 06:18:49 +00:00
treeviewx - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
tRNAscan-SE
wise
xdrawchem - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
xmolwt
Makefile PhyML is a software that estimates maximum likelihood phylogenies from 2009-07-21 01:10:13 +00:00