Commit graph

346 commits

Author SHA1 Message Date
markd
740b61b73d Fix build on NetBSD-current: rename getline() and openssl>=1.0 issues. 2010-12-08 11:30:18 +00:00
asau
f2facf4d36 Does remove this patch (empty now). 2010-11-24 01:57:29 +00:00
asau
859ffc5347 Update to OpenMPI 1.4.3
New in 1.4.3
------------

- Fixed handling of the array_of_argv parameter in the Fortran
  binding of MPI_COMM_SPAWN_MULTIPLE.
- Fixed a problem with the Fortran binding for
  MPI_FILE_CREATE_ERRHANDLER.  Thanks to Secretan Yves for identifying
  the issue.
- Updates to the LSF PLM to ensure that the path is correctly passed.
  Thanks to Teng Lin for the patch.
- Fixes for the F90 MPI_COMM_SET_ERRHANDLER and MPI_WIN_SET_ERRHANDLER
  bindings.  Thanks to Paul Kapinos for pointing out the issue.
- Fixed various MPI_THREAD_MULTIPLE race conditions.
- Fixed an issue with an undeclared variable from ptmalloc2 munmap on
  BSD systems.
- Fixes for BSD interface detection.
- Various other BSD fixes.  Thanks to Kevin Buckley helping to track.
  all of this down.
- Fixed issues with the use of the -nper* mpirun command line arguments.
- Fixed an issue with coll tuned dynamic rules.
- Fixed an issue with the use of OPAL_DESTDIR being applied too aggressively.
- Fixed an issue with one-sided xfers when the displacement exceeds 2GBytes.
- Change to ensure TotalView works properly on Darwin.
- Added support for Visual Studio 2010.
- Fix to ensure proper placement of VampirTrace header files.
- Needed to add volatile keyword to a varialbe used in debugging
  (MPIR_being_debugged).
- Fixed a bug in inter-allgather.
- Fixed malloc(0) warnings.
- Corrected a typo the MPI_Comm_size man page (intra -> inter).  Thanks
  to Simon number.cruncher for pointing this out.
- Fixed a SegV in orted when given more than 127 app_contexts.
- Removed xgrid source code from the 1.4 branch since it is no longer
  supported in the 1.4 series.
- Removed the --enable-opal-progress-threads config option since
  opal progress thread support does not work in 1.4.x.
- Fixed a defect in VampirTrace's vtfilter.
- Fixed wrong Windows path in hnp_contact.
- Removed the requirement for a paffinity component.
- Removed a hardcoded limit of 64 interconnected jobs.
- Fix to allow singletons to use ompi-server for rendezvous.
- Fixed bug in output-filename option.
- Fix to correctly handle failures in mx_init().
- Fixed a potential Fortran memory leak.
- Fixed an incorrect branch in some ppc32 assembly code.  Thanks
  to Matthew Clark for this fix.
- Remove use of undocumented AS_VAR_GET macro during configuration.
- Fixed an issue with VampirTrace's wrapper for MPI_init_thread.
- Updated mca-btl-openib-device-params.ini file with various new vendor id's.
- Configuration fixes to ensure CPPFLAGS in handled properly if a non-standard
  valgrind location was specified.
- Various man page updates
2010-11-24 01:56:13 +00:00
wiz
c1a4752633 Add patch from Manuel Tobias Schiller:
I managed to trace things to the file libmetrics/netbsd/metrics.c in
the get_netbw function. Apparently, the code in get_netbw violates
alignment constraints for sparc64. I attached a patch against the result
of a "make patch" in parallel/ganglia-monitor-core. While I was at it, I
also changed proc_run_func somewhat to only count actually running
processes (having a look at NetBSD's ps(1) implementation) - without the
change, I got around 30 running processes on an idle machine.

"Looks good at a quick glance" martin@

Bump PKGREVISION.
2010-11-18 13:50:09 +00:00
wiz
200e3c4a04 Bump dependency on pixman to 0.18.4 because cairo-1.10 needs that
version, and bump all depends.

Per discussion on pkgsrc-changes.
2010-09-14 11:00:44 +00:00
seb
c3f1e700ad Bump the PKGREVISION for all packages which depend directly on perl,
to trigger/signal a rebuild for the transition 5.10.1 -> 5.12.1.

The list of packages is computed by finding all packages which end
up having either of PERL5_USE_PACKLIST, BUILDLINK_API_DEPENDS.perl,
or PERL5_PACKLIST defined in their make setup (tested via
"make show-vars VARNAMES=..."), minus the packages updated after
the perl package update.

sno@ was right after all, obache@ kindly asked and he@ led the
way. Thanks!
2010-08-21 16:32:42 +00:00
asau
dfc6889736 "fortran" -> "fortran77" except where it is clear that it isn't F77.
"fortran" is alias of "fortran77" for now, but it will change later.
2010-07-30 10:36:22 +00:00
wiz
e8d8834f6a Bump PKGREVISION for libpng shlib name change.
Also add some patches to remove use of deprecated symbols and fix other
problems when looking for or compiling against libpng-1.4.x.
2010-06-13 22:43:46 +00:00
adam
9d058a64ed Revision bump for db4 update 2010-06-02 13:25:53 +00:00
obache
8f22f22446 exactly disable to build with java, or result in PLIST mismatch. 2010-05-28 12:15:42 +00:00
asau
bd5d527473 Update to MPICH2 1.2.1p1.
This is primarily a bug fix release that fixes several issues on
PowerPC systems, build system bugs, and the MPD process manager.
2010-05-17 18:27:15 +00:00
asau
d1e81b58b6 Update to OpenMPI 1.4.2
Changes in v1.4.2 as compared to v1.4.1:

- Fixed problem when running in heterogeneous environments.
- Update LSF support to ensure that the path is passed correctly.
- Fixed some miscellaneous oversubscription detection bugs.
- IBM re-licensed its LoadLeveler code to be BSD-compliant.
- Various fixes for multithreading deadlocks, race conditions, and
  other nefarious things.
- Fixed ROMIO's handling of "nearly" contiguous issues (e.g., with
  non-zero true_lb).
- Bunches of Windows build fixes.
- Now allow the graceful failover from MTLs to BTLs if no MTLs can
  initialize successfully.
- Added "clobber" information to various atomic operations, fixing
  erroneous behavior in some newer versions of the GNU compiler suite.
- Update various iWARP and InfiniBand device specifications in the
  OpenFabrics .ini support file.
- Fix the use of hostfiles when a username is supplied.
- Various fixes for rankfile support.
- Updated the internal version of VampirTrace to 5.4.12.
- Fixed OS X TCP wireup issues having to do with IPv4/IPv6 confusion
  (see https://svn.open-mpi.org/trac/ompi/changeset/22788 for more
  details).
- Fixed some problems in processor affinity support, including when
  there are "holes" in the processor namespace (e.g., offline
  processors).
- Ensure that Open MPI's "session directory" (usually located in /tmp)
  is cleaned up after process termination.
- Fixed some problems with the collective "hierarch" implementation
  that could occur in some obscure conditions.
- Various MPI_REQUEST_NULL, API parameter checking, and attribute
  error handling fixes.
- Fix case where MPI_GATHER erroneously used datatypes on non-root nodes.
- Patched ROMIO support for PVFS2 > v2.7 (patch taken from MPICH2
  version of ROMIO).
- Fixed "mpirun --report-bindings" behavior when used with
  mpi_paffinity_alone=1.  Also fixed mpi_paffinity_alone=1 behavior
  with non-MPI applications.
- Ensure that all OpenFabrics devices have compatible receive_queues
  specifications before allowing them to communicate.  See the lengthy
  comment in https://svn.open-mpi.org/trac/ompi/changeset/22592 for details.
- Fix some issues with checkpoint/restart.
- Improve the pre-MPI_INIT/post-MPI_FINALIZE error messages.
- Ensure that loopback addresses are never advertised to peer
  processes for RDMA/OpenFabrics support.
- Fixed a CSUM PML false positive.
- Various fixes for Catamount support.
- Minor update to wrapper compilers in how user-specific argv is
  ordered on the final command line.  Thanks to Jed Brown for the
  suggestions.
2010-05-14 20:12:58 +00:00
joerg
3a06eb96bf Bump revision for PYTHON_VERSION_DEFAULT change. 2010-02-10 19:17:31 +00:00
joerg
14f89d39e5 Retire GridSim. 2010-02-10 17:33:36 +00:00
zafer
705b612f56 update MASTER_SITES. 2010-01-31 21:08:58 +00:00
asau
a8dd225f2a Update to OpenMPI 1.4.1:
- Update to PLPA v1.3.2, addressing a licensing issue identified by
  the Fedora project.  See
  https://svn.open-mpi.org/trac/plpa/changeset/262 for details.
- Add check for malformed checkpoint metadata files (Ticket #2141).
- Fix error path in ompi-checkpoint when not able to checkpoint
  (Ticket #2138).
- Cleanup component release logic when selecting checkpoint/restart
  enabled components (Ticket #2135).
- Fixed VT node name detection for Cray XT platforms, and fixed some
  broken VT documentation files.
- Fix a possible race condition in tearing down RDMA CM-based
  connections.
- Relax error checking on MPI_GRAPH_CREATE.  Thanks to David Singleton
  for pointing out the issue.
- Fix a shared memory "hang" problem that occurred on x86/x86_64
  platforms when used with the GNU >=4.4.x compiler series.
- Add fix for Libtool 2.2.6b's problems with the PGI 10.x compiler
  suite.  Inspired directly from the upstream Libtool patches that fix
  the issue (but we need something working before the next Libtool
  release).
2010-01-19 00:45:58 +00:00
wiz
579796a3e5 Recursive PKGREVISION bump for jpeg update to 8. 2010-01-17 12:02:03 +00:00
asau
a102105a66 DragonFly build fix: treat DragonFly the same way as FreeBSD.
Catched by bulk builds, tested by Stathis Kamperis.
2010-01-12 20:42:16 +00:00
joerg
3fbb207985 Recursive bump for libltdl 2009-12-15 21:54:17 +00:00
asau
cc3e5cec8f Conflicts with "mpich" and "mpich2" packages.
Noticed by Helge Muehlmeier.
2009-12-15 11:45:54 +00:00
asau
5fea2e3dc6 Update to MPICH2 1.2.1.
===============================================================================
                               Changes in 1.2.1
===============================================================================

 # OVERALL: Improved support for fine-grained multithreading.

 # OVERALL: Improved integration with Valgrind for debugging builds of MPICH2.

 # PM/PMI: Initial support for hwloc process-core binding library in
   Hydra.

 # PM/PMI: Updates to the PMI-2 code to match the PMI-2 API and
   wire-protocol draft.

 # Several other minor bug fixes, memory leak fixes, and code cleanup.
   A full list of changes is available using:

     svn log -r5425:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.2.1

     ... or at the following link:

     https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.2.1?action=follow_copy&rev=HEAD&stop_rev=5425&mode=follow_copy


===============================================================================
                               Changes in 1.2
===============================================================================

 # OVERALL: Support for MPI-2.2

 # OVERALL: Several fixes to Nemesis/MX.

 # WINDOWS: Performance improvements to Nemesis/windows.

 # PM/PMI: Scalability and performance improvements to Hydra using
   PMI-1.1 process-mapping features.

 # PM/PMI: Support for process-binding for hyperthreading enabled
   systems in Hydra.

 # PM/PMI: Initial support for PBS as a resource management kernel in
   Hydra.

 # PM/PMI: PMI2 client code is now officially included in the release.

 # TEST SUITE: Support to run the MPICH2 test suite through valgrind.

 # Several other minor bug fixes, memory leak fixes, and code cleanup.
   A full list of changes is available using:

     svn log -r5025:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.2

     ... or at the following link:

     https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.2?action=follow_copy&rev=HEAD&stop_rev=5025&mode=follow_copy


===============================================================================
                               Changes in 1.1.1p1
===============================================================================

 - OVERALL: Fixed an invalid read in the dataloop code for zero count types.

 - OVERALL: Fixed several bugs in ch3:nemesis:mx (tickets #744,#760;
   also change r5126).

 - BUILD SYSTEM: Several fixes for functionality broken in 1.1.1 release,
   including MPICH2LIB_xFLAGS and extra libraries living in $LIBS instead of
   $LDFLAGS.  Also, '-lpthread' should no longer be duplicated in link lines.

 - BUILD SYSTEM: MPICH2 shared libraries are now compatible with glibc versioned
   symbols on Linux, such as those present in the MX shared libraries.

 - BUILD SYSTEM: Minor tweaks to improve compilation under the nvcc CUDA
   compiler.

 - PM/PMI: Fix mpd incompatibility with python2.3 introduced in mpich2-1.1.1.

 - PM/PMI: Several fixes to hydra, including memory leak fixes and process
   binding issues.

 - TEST SUITE: Correct invalid arguments in the coll2 and coll3 tests.

 - Several other minor bug fixes, memory leak fixes, and code cleanup.  A full
   list of changes is available using:

     svn log -r5032:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.1.1p1

     ... or at the following link:

     https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.1.1p1?action=follow_copy&rev=HEAD&stop_rev=5032&mode=follow_copy


===============================================================================
                               Changes in 1.1.1
===============================================================================

 # OVERALL: Improved support for Boost MPI.

 # PM/PMI: Significantly improved time taken by MPI_Init with Nemesis and MPD on
   large numbers of processes.

 # PM/PMI: Improved support for hybrid MPI-UPC program launching with
   Hydra.

 # PM/PMI: Improved support for process-core binding with Hydra.

 # PM/PMI: Preliminary support for PMI-2. Currently supported only
   with Hydra.

 # Many other bug fixes, memory leak fixes and code cleanup. A full
   list of changes is available using:

  svn log -r4655:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.1.1

  ... or at the following link:

  https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.1.1?action=follow_copy&rev=HEAD&stop_rev=4655&mode=follow_copy


===============================================================================
                               Changes in 1.1
===============================================================================

- OVERALL: Added MPI 2.1 support.

- OVERALL: Nemesis is now the default configuration channel with a
  completely new TCP communication module.

- OVERALL: Windows support for nemesis.

- OVERALL: Added a new Myrinet MX network module for nemesis.

- OVERALL: Initial support for shared-memory aware collective
  communication operations.  Currently MPI_Bcast, MPI_Reduce, MPI_Allreduce,
  and MPI_Scan.

- OVERALL: Improved handling of MPI Attributes.

- OVERALL: Support for BlueGene/P through the DCMF library (thanks to
  IBM for the patch).

- OVERALL: Experimental support for fine-grained multithreading

- OVERALL: Added dynamic processes support for Nemesis.

- OVERALL: Added automatic as well as statically runtime configurable
  receive timeout variation for MPD (thanks to OSU for the patch).

- OVERALL: Improved performance for MPI_Allgatherv, MPI_Gatherv, and MPI_Alltoall.

- PM/PMI: Initial support for the new Hydra process management
  framework (current support is for ssh, rsh, fork and a preliminary
  version of slurm).

- ROMIO: Added support for MPI_Type_create_resized and
  MPI_Type_create_indexed_block datatypes in ROMIO.

- ROMIO: Optimized Lustre ADIO driver (thanks to Weikuan Yu for
  initial work and Sun for further improvements).

- Many other bug fixes, memory leak fixes and code cleanup. A full
  list of changes is available using:

  svn log -r813:HEAD https://svn.mcs.anl.gov/repos/mpi/mpich2/tags/release/mpich2-1.1

  ... or at the following link:

  https://trac.mcs.anl.gov/projects/mpich2/log/mpich2/tags/release/mpich2-1.1?action=follow_copy&rev=HEAD&stop_rev=813&mode=follow_copy
2009-12-13 18:38:10 +00:00
asau
38fb0e0a9a + openmpi 2009-12-12 23:32:10 +00:00
asau
43b8814eca Import OpenMPI 1.4 as parallel/openmpi.
OpenMPI is open source MPI-2 implementation.
2009-12-12 23:30:01 +00:00
asau
5cdb0f8408 Update to OpenPA 1.0.2.
New in OpenPA v1.0.2:

Major Changes:
      * Add support for 64-bit PPC.
      * Static initializer macros for OPA types.

balaji (1):
      * Fix pthread_mutex usage for inter-process shared memory regions.

buntinas (1):
      * added OPA typedef for pthread_mutex_t

fortnern (4):
      * Add more tests for compare-and-swap.
      * Add integer compare-and-swap fairness test.
      * Add pointer version of compare-and-swap fairness test.
      * Added configure test for pthread_yield.

goodell (6):
      * Fix bad include guard in the opa_by_lock.h header.
      * Add new "unsafe" primitives.  Also minor updates to the docs.
      * Add support for 64-bit PPC.
      * Update README to reflect 64-bit PPC support.
      * Add static initializer macros for OPA_int_t/OPA_ptr_t.
      * Actually include the COPYRIGHT and CHANGELOG files in the distribution.

jayesh (1):
      * Fixed compiler warnings in NT intrinsics. Now type casting the arguments to NT intrinsics correctly
2009-12-11 03:58:37 +00:00
asau
deb194fbb7 Support staged installation. 2009-12-10 21:19:16 +00:00
asau
6754aacfb8 Follow f2c/libf2c split: bump revision of all packages
that list Fortran in used languages.
2009-12-03 13:06:51 +00:00
joerg
6a85c1f555 Remove parallel/glunix. It fails in the patch phase on NetBSD 4 and
later. After fixing that, it fails with C++ errors, so it couldn't have
been build at least for 3 years. Assume noone cares.
2009-11-26 17:04:18 +00:00
brook
9ed8e79a26 Update to v3.1.2. The number of changes over the intervening years is
too large to list here.  See the ChangeLog file or the home page for
details.
2009-11-10 14:55:17 +00:00
asau
1dd807aeca Add "openpa". 2009-10-26 09:19:07 +00:00
asau
5751f91e9b Import OpenPA 1.0.1 as parallel/openpa.
OpenPA is open source, highly-portable library that provides
atomic primitives (and related constructs) for high performance,
concurrent software.
2009-10-23 21:57:20 +00:00
asau
f812c8be2d Remove parallel/openpbs as announced on pkgsrc-users and tech-pkg. 2009-09-13 08:25:34 +00:00
markd
1a63a19d60 Fix installed manual pages to correctly refer to SGE rather than GE.
Also fix some interpreter paths.  Bump PKGREVISION.
2009-08-19 09:56:22 +00:00
joerg
d289453e83 Remove @dirrm entries from PLISTs 2009-06-14 18:10:40 +00:00
obache
aae5d7a71b regen distinfo to refrect last update. 2009-06-11 07:15:54 +00:00
asau
8afd85a9a0 Update to PVM 3.4.6
Changes since previous release:
- security fixes;
- update of the BEOLIN architecture port;
- miscellaneous bug and documentation fixes.
2009-05-19 23:44:55 +00:00
markd
215305ee98 Update sge to 6.2.2.1
Grid Engine 6.2, which has undergone significant changes in qmaster to
significantly improve its scalability in challenging environments, adds
powerful features to the core system, introduces multi cluster support
for the Accounting and Reporting Console (ARCo) and comes with a new
module extending the scope of Grid Engine to a new domain of use cases:
the Service Domain Manager (SDM), aka. project Hedeby allows to
dynamically (re-)assign computational resources on demand.

plus lots of bug fixes.
2009-05-13 21:00:25 +00:00
joerg
d0076c3403 Remove the remaining NO_MTREE definitions, it has been a nop for a
while.
2009-04-08 22:43:23 +00:00
joerg
2d1ba244e9 Simply and speed up buildlink3.mk files and processing.
This changes the buildlink3.mk files to use an include guard for the
recursive include. The use of BUILDLINK_DEPTH, BUILDLINK_DEPENDS,
BUILDLINK_PACKAGES and BUILDLINK_ORDER is handled by a single new
variable BUILDLINK_TREE. Each buildlink3.mk file adds a pair of
enter/exit marker, which can be used to reconstruct the tree and
to determine first level includes. Avoiding := for large variables
(BUILDLINK_ORDER) speeds up parse time as += has linear complexity.
The include guard reduces system time by avoiding reading files over and
over again. For complex packages this reduces both %user and %sys time to
half of the former time.
2009-03-20 19:23:50 +00:00
hasso
0ce57ee89d Fix MAINTAINER. 2009-03-08 06:15:31 +00:00
asau
316a689776 Use MASTER_SITE_NETLIB for Netlib and its mirrors.
Discussed with Tobias Nygren.
2009-02-22 14:15:28 +00:00
joerg
a9ad053a90 Fix maintainer 2009-02-16 13:34:38 +00:00
joerg
3c645bb7fc Switch to Python 2.5 as default. Bump revision of all packages that have
changed runtime dependencies now.
2009-02-09 22:56:21 +00:00
jschauma
65e9c90d89 Give up maintainership, as I have not so much as looked at pkgsrc in
well over a year now.  Sorry. :-(
2009-01-23 21:14:16 +00:00
obache
af6c0740c7 Update MPICH2 to 1.0.8, maintainer update request by PR 40239.
Changes since 1.0.7:
- Added support for MPI 2.1
- Added support for MPI_Type_create_resized and
  MPI_Type_create_indexed_block datatypes in ROMIO.
- Bug fixes, memory leak fixes and code cleanup.
2008-12-21 11:41:01 +00:00
is
c3c4e532c6 Use ssh for SUN4SOL2, like everywhere else. Bump revision. 2008-12-16 15:56:17 +00:00
markd
dcd6a09cb8 Update SGE to 6.1.5
patch-au compiles sge_arch.c with -ansi so that stringification hack works
on NetBSD and FreeBSD and probably others. Otherwise architecture names
like nbsd-i386 turn into nbsd-1 - From the FreeBSD port.

Bugs fixed in SGE 6.1u5 since release 6.1u4

wrong documentation for upgrade 6.0u2 and higher to 6.1u2 and higher
Multiple loadsensor instances are trying to access the same temp load
 file on AIX51
Validation of the Filter List in Simple Query builder fails
qhost -l h=<hostname> does not work
Numbers in error mail too large
use of the same pathes for input/output stream must be dealt with
DRMAA Java language binding segfaults on Session.exit() with sol-x86
 binaries on AMD64
sgeexecd startup script shouldn't suppress error messages from sge_execd
 binary
Advanced Query with wild card character * does not produce correct results.
'Infinity' must be rejected when specified in 'complex_values' or RQS
 limits for consumables
Invalid qconf -mrqs crashes qmaster with segmentation fault
RQS: Line wrap of host list introduces syntax error
Row Limit in ARCo Simple Query builder cannot be empty
loadsensor does not work on AIX51
qhost -xml has wrong namespace
QMON: The help for Resource Quotas is not available
qmon fills in fields incorrectly for restoring config for Submit Job
sgemaster -qmaster stop shutdowns also shadowd
incorrect depencency on xinetd in init scripts for linux
Latebindings for Advanced Queries does not work
Switching from Simple Query to Advanced Query removes the Latebingings
32-bit Linux binaries are having problems with file access in 64-bit NFS
 environments
using of default_domain may prohibit execd installation
Commlib might crash if running out of memory
Configuration file check of automatic installation does not recognize remsh
loadcheck prints error message "kstat finds too many cpus"
Communication library thread locking problem results in qmaster crash
ARCo should not print exception stack trace in the console
TABLESPACE values should be written to dbwriter.conf
Incorrectly considering two host group names to be the same
Clients not disconnecting correctly
SGE util/arch script is broken for AIX 5.3 Operating System
error message given by qalter -q '' <jobid> suggests a memory access problem
bootstrap(5) man page sees itself als sge_conf(5)
qmaster reinstall overwriting an existing installation fails
qconf -ae|-Ae return 0 even if exechost exists already
qconf -dxxxx does not set exit status on error
qconf -as, -am, -ao, -Ae, -Acal, -Ackpt, -Ap when msg "already exist"
 should return not 0 exit code
qconf -acal doesn't return error code 1 when failed
setting of QMaster port number leads to infinite loop
use of -l tmpdir=abc can crash schedd
load scaling display not working correctly
qstat -j does not print array task information
job hold due to -hold_jid is not indicated as STATE_SYSTEM_ON_HOLD by
 drmaa_job_ps(3)
Segmentation fault of sge_schedd
A load sensor reporting values for other hosts does not work
reporting file is lacking information about global consumables, if
 log_consumables=false
Wallclock_Time query should be more constrained
"./install_execd -winsvc -auto /path/to/auto.conf" command causes error
The default has to be local spool directory when install_execd is run for
 a Windows host
qmaster runs out of memory on AIX
dbw install parameters are not verified
Incorrect slots_total from qstat -F -xml output
Wrong permissions if install_qmaster creates qmaster spool directory
Installation of execution daemon left user unclear which port was chosen.
Exception occurs during the exportation of a query result to pdf
memory leak in sge_execd with qsub -v SGE_* or qsub -V
ARCo should support SJWC 3.1

Bugs fixed in SGE 6.1u4 since release 6.1u3

on Windows installation fails when installing as root and SGE admin
 user = none
accounting records for slave tasks of pe jobs should contain the correct
 task submission time
check if config parameters qlogin_daemon and rlogin_daemon are pathes
parallel scheduling memory leak in sge_schedd
execd installation does not test absolute path for local spool dir
Sort on table column throws exception if explicit SORT specified in
 SimpleQuery Sort on table column
Error.jsp contains unbalanced tagError.jsp contains unbalanced tag
arco_read should be able to create synonyms instead of arco_write
DBW should use batch inserts
prolog an epilog descriptions should include exit codes
It is possible to negative tickets / shares in qmon and from the command
 line
ORDER BY clause ignored in Advanced Query
Queue Consumables query incorrect in ARCo predefined queries
CLI accepts the slot number of more than 10000000
ARCo online help contains invalid, unclear or outdated information
the installation of two rpc databases on the some host fails
DBWriter should not exit if there is a database connection error
Reporting 'View' dropdown menu and 'Save Result' functionality is confusing
DBW derived rules and reporting queries that count jobs need to be updated
incomplete error loging in case of classic spooling failures
Row Limit in Simple Query uses wrong syntax
NONE' as value is not rejected for queue_conf(5) shell and qsub(1) -S
Upgrade to 6.1u3 fails for PostgreSQL < 8.0, minor issues i
 dbdefinition.xml for PSQL > 8.0
dbwriter should write checkpoint to database
dbwriter deletion rules delete tasks of pe_jobs
unclear 'exit_status' description in accounting(5) about Grid Engine
 specific status
autoinstall configfile should be parsed and checked for valid input!
qstat -j output is broken for shell_path
the project field should be displayed in the qstat -j output
Wrong variable for calculating daily host values from hourly ones
Pending PE job qstat -j output displays addtional useless message when not
 running because of RQs
automatic backup is broken!
Spelling mistakes in the qmon help menus
deletion rule for PostgreSQL incorrect for deletion of sge_share_log
qquota broken if quota definition contains "hosts" or "users" scope negation
Access_list(5) man page not precise enough with regards secondary/primary
 group(s)
RQS debitation of running jobs is broken if enabled by -mattr
Set SGE_QMASTER_PORT in settings file if sge_qmaster is not found in
 /etc/services file
Failed to deliver STOP signal for subordinated jobs
Missing array job task usage in the accounting file
qhost/qstat can't be interrupted with ctrl-c
typographical errors in messages from install_qmaster
Sort order and row limit cannot be specified together in ARCo Simple Query
 builder
Qmaster segfaults with long host resource evaluation expression
Error message for unsupported platforms should be more verbose
qsub does not accept resource strings size larger than 256
Memory leak in drmaa_run_job()/drmaa_run_bulk_job()
ARCo reporting module installation script is broken on Red Hat Enterprise
 Linux 4 Update 4
Job predecessor list missing from qstat -j output
In SJWC on Oracle dates appear truncated to just MM/DD/YYYY
configfile check in automatic installation is to strict
load sensor might block execd port
Uninstallation of remote execd if not interactive
Infotext spawned on remote machine with -wait or -ask does not display the
 text
Uninstall does not remove the SGE_STARTUP_SCRIPT
qmaster crashes when SGE_ND=1, dl 2 and BDB server spooling
inst_sge -ux all -um fails
Usage string for some commands is incomplete
dbwriter installation can't finish on large amount of data
reprioritize disappears after sge_qmaster restart
qmaster failover should not change the state of any queue
2008-11-26 10:20:08 +00:00
wiz
285b7dd776 Bump PKGREVISION for libXaw API depends bump due to libXaw8 removal. 2008-11-10 17:21:33 +00:00
he
b021813da0 Bump the PKGREVISION for all packages which depend directly on perl,
to trigger/signal a rebuild for the transition 5.8.8 -> 5.10.0.

The list of packages is computed by finding all packages which end
up having either of PERL5_USE_PACKLIST, BUILDLINK_API_DEPENDS.perl,
or PERL5_PACKLIST defined in their make setup (tested via
"make show-vars VARNAMES=...").
2008-10-19 19:17:40 +00:00
joerg
130282be6a Rename dehumanize_number to avoid conflict with libc. 2008-09-19 19:39:22 +00:00
ahoka
4843537887 Bugs fixed in SGE 6.1u3 since release 6.1u2
-------------------------------------------

Issue    Sun BugId Description
-------- --------- ------------------------------------------------------------------------------------------
376      4743006   problem with floating point job resource limits
1909     6353628   information provided by qstat -j and qstat -j -xml are not equivalent
2076     6440408   qstat -j messages disagree between plain, XML output
2077     6440412   qstat -j -xml messages incomplete
2138     6506667   forbid deletion of global config values
2194     6527836   authuser binary returns unusable error message!
2249     6568575   SGE does not work if primary group entry is too big in groups map
2270     6575720   ENABLE_ADDGRP_KILL is missing from sge_conf(5)
2272     6575727   sge_shadowd(8) man page is missing some env vars
2274     6564461   Duplicate scheduling info messages for reservation jobs
2276     6575731   share_tree(5) doesn't explain type field
2283     6565821   Oracle, Postgres DWB should prompt for tablespace where indexes and tables should be created
2293     6569088   Resource reservation broken for sequential jobs depending on RQS specified for subset of queues only
2303     6571749   parallel resource reservation broken when non-queue instance based quotas limits apply
2323     6576153   Creating a userset with NONE as a type results in a core dump
2327     6578213   qconf -(A,D,M,R)attr dumps core when the supplied file is empty
2328     6579232   high scheduler dispatching time with many sequential resource reservation jobs and resource quotas
2336     6287501   rctemplates lack of requirement
2338     6585721   Parallel RR broken if jobs wait for queue slots and no RQS configured
2342     6590010   Original primary group vanishes after newgrp command (USE_QSUB_GID=true)
2344     6590079   Resource reservation broken with sequences of identical jobs differing only in their -R y|n
2346     6604155   qmon binary job submit is broken
2351     6597463   qsub -t 1-N:N creates a normal job with one task
2352     6594665   Installation fails on Linux with glibc 2.6
2353     6597423   commit method of UnixLoginModule does not report RuntimeExceptions
2356     6600619   Userset spooling in classic mode is broken
2367     6597547   qdel does not recognize wc_job_range_list as it is defined
2369     6577034   Several qconf options display only single message when a list of messages should be printed
2372     6469494   clients should issue a more explicit error message when qmaster is busy
2374     6589459   Expose the availability of keyword "none" in the manual page of calendar_conf
2382     6569862   Unset old_value out of the scope
2383     6553062   qconf -mc accepts erroneous resource entries without an urgency; qmon gives (poor) error message
2387     6614041   Multiple occurrence of a name in RQS limit definition break classic spooling
2392     6614108   Specifying more than one drmaa_v_env attribute causes spurious error msg
2394     6608259   scheduler prints empty line in messages file after every 'sge_mirror' logging
2396     6608236   scheduling of parallel jobs does not respect consumables, if consumable is referenced in rqs
2400     6564543   sge_shepherd should exit if it cannot write to any of its essential files
2401     6617450   add option to reporting_params for switching off writing of consumables
2404     6618328   qmon displays wrong string for queue filtering
2406     6596931   Incorrect messages in qconf command
2407     6618619   the restore feature does not delete old configuration before restoring
2409     6619016   removing parameters from the reporting_params will not fallback to the default
2410     6619657   qmod -e|-d '*' times out in large clusters
2411     6619662   qhost becomes sluggish in large clusters
2414     6618599   Long running jobs cause incorrect usage summary for ARCo database
2415     6620930   ARCO view_accounting filters out parallel job usage incorrectly
2416     6621482   ju_exit_status should provide means to recognize the intermediate record
2417     6622842   the start_time field in intermediate accounting records is incorrect
2418     6588743   qrsh fails with "connection refused" error message
2419     6391244   qstat -ext reports wrong usage as compared to other commands such as qstat -t or qstat -j
2424     6620253   During the installation the admin user should create web.xml file
2428     6630268   upgrade from 6.0u2 and higher to 6.1u2 and higher does not work
2435     6599335   inst_sge help output for -upd switch is incorrect


Bugs fixed in SGE 6.1u2 since release 6.1u1
-------------------------------------------

Issue    Sun BugId Description
-------- --------- ------------------------------------------------------------------------------------------
-        6590960   Man pages show the wrong version number
2345     6590574   resource quota can prevent dispatching of jobs that requests no resource in this quota
2343     6589807   newline missing from "illegal debug level format" message
2338     6585721   Parallel RR broken if jobs wait for queue slots and no RQS configured
2334     6584632   user/system/operator hold state combinations cause strange qstat output


Bugs fixed in SGE 6.1u1 since release 6.1
-----------------------------------------

Issue    Sun BugId Description
-------- --------- ------------------------------------------------------------------------------------------
2323     6576153   Creating a userset with NONE as a type results in a core dump
2317     6574565   Oralce, Postgres FOREIGN KEY fields need to be indexed
-        6573980   'qconf -help' suggests usage of patterns in user_list which is not true
2316     6573508   qrsh with ssh causes job to go in error state when Ctrl-C is pressed
2308     6572803   qhost -xml lacks '>' with initial qhost tag
2309     6572801   sge_queue_values definition does not contain PRIMARY KEY
2321     6571714   Inadequate error message when qconf -sstree is run when no share tree is configuredIf no share tree
2241     6568712   util/arch has problem recognizing libc version number with comma
2292     6568578   6.1 upgrade procedure shall exit when there are jobs in the cluster
2249     6568575   SGE does not work if primary group entry is too big in groups map
2284     6565841   Oracle: rollback segments keep filling up, Postgres: delete query keeps running
2306     6564592   SGE 6.1 upgrade procedure is broken when using the classic qmaster spooling
2275     6564503   sge_schedd deadlock upon schedd_job_info job_list being enabled
2250     6558006   qmaster may crash with projects or usersets used in RQS
2243     6555744   qmon crashes when displaying about dialog
2248     6554313   add -u <user> to scheduler category only if there is a resource quota for the user
2238     6551568   need faster resource quota matchmaking and more concise job info messages
-        6550718   qstat -j lacks resource quota info messages in case of "incomplete" resource quotas
2296     6548455   csp mode installation, using /etc/services, qmaster is not starting!
2232     6546807   qhost -j -xml does not work
2325     6542987   drmaa_run_job(3) raises error if drmaa_native_specification has leading spaces
2239     6542137   use of hostgroups in resource quotas is less performant than the full list of hosts
-        6541085   NFS write error on N1GE trace file
2300     6539199   qquota(1) filtering broken for project and pe if -P/-pe switch is not used
2299     6536039   sgeremoterun not working
2201     6529974   Use of MORE fails on some architectures
-        6528949   inst_sge -ux uninstallation of exechost tries to delete local spooldir, even it isn't configured!
2191     6525883   qstat -s hX filtering is broken on darwin
2189     6525375   qacct ignores jobs in output
2320     6513115   in qmon, under calendar configuration, it is possible to modify even if no calendar exists
2326     6506661   sge_conf(5), description for rlogin_daemon and qlogin_daemon is wrong
2307     6433628   qconf -sq all.q@myhost produces no value at all for complex_values (not even NONE)
2289     6565951   Qmon panel does not check for valid data in Scheduler Configuration
2314     6513116   Qmon x qconf inconsistent in allowed characters in attribute names
-        6195248   QMON Job Control Window: Incomprehensible Priority Button
2313     6410592   Double clicking in Consumables/Fixed Attributes list does not behave as a GUI should
2312     6482211   complex attributes whose deletion is denied donot reflect back after the denial message in qmon
2301     6551121   Memory leak in libdrmaa.so
916      6355875   qsub -terse to just output job id
-        6522273   Wrong exit code with qconf -sds
2266     6563346   Wrong usage of 'day' format model in trunc(date) Oracle functions
2187     6562190   memory leak in sge_schedd
2265     6280747   qmon loses sharetree changes
747      6291044   "Modify"-Button is activated but should be grayed
2263     6553066   qmon's Complex Configuration Load and Save buttons did not work
2262     4742097   Qmon has a ticket number limitation
1729     4818801   qmon on secondary screen crashes when "Job Control" is pressed
2261     6538740   clear usage operation should implicitely trigger refresh in share-tree dialogue
2260     6327539   Ability to sort queue instances using each column of the queue instances table
2229     6544869   UNKNOWN group/owner in accouting(5)
2247     6556411   DBW queries "Average Job Turnaround Time", "Average Job Wait Time" might not work
-        6481737   Arco should support webconsole 3.0.x
-        6559385   Calling JGDI getQueueInstanceSummary results in a memory leak
1813     6328064   Queue request -q from sge_request can't be overridden through command line
-        6355674   arcorun can not be used as sge_admin user if the toc file is not available
2164     6514085   Need a possibility to update existing example queries for the ARCo web application
-        6426331   remove util/sge_log_tee from distribution
-        6476263   function job_get_id_string() is not MT save and used in qmaster
2219     6536426   inst_sge -m fails for non-root when USER variable is not set
1860     6345522   qdel on a job in deleted state does not output any information
2258     5081743   queue status in reporting file is missing.
2050     6422335   still used usersets/project/calendar/pe/checkpoint can be removed under certain conditions


Bugs fixed in SGE 6.1 since release 6.1_beta
--------------------------------------------

Issue    Sun BugId Description
-------- --------- ------------------------------------------------------------------------------------------
1941     5086007   qstat -qs doesn't work
2183     6499217   meaningless error in clients when reporting_param flush_time is incorrectly set
-        6525497   JGDI crashes JVM when null is passed to JNI GetStringUTFChars function
2220     6440226   add installation of SGE_Helper_Service to auto installation
2221     6521802   the binary check in inst_sge is wrong!
-        6537633   Extraneous space in qsub's "Invalid month specification." message
2222     6538293   Hybrid user/project share-tree is broken for user sharing amongst array jobs
2180     6518684   Qconf usage x man page inconsistency
2181     6518689   Project man page contains different attribute names.
2171     6516288   Scheduler does not write pid file in daemonize phase
2178     6518607   invalid memory access in cl_com_get_handle
-        6520761   add background mode to N1 Grid Engine Helper Service
-        6233523   loadcheck reports on a hyperthreaded CPU only one processor
-        6276612   provide support for Itanium platform
752      6288953   scalability issue with qdel and very large array jobs
751      6291047   qconf -sstnode cannot find root
-        6303750   Install guide ambiguous on role of CSP
1930     6329378   incorrect qsub error message, if an invalid integer value is passed to the -l option
1858     6344960   qtcsh behaves differently in direct mode from qrshmode
1933     6349037   "qstat -explain E" displays explanation of the same error two times.
1940     6362523   qstat -q filter does compare hosts in queue instances
-        6363245   on some Windows execution hosts, execd hangs after the job has finished
1978     6383256   no newline at end of sge_shepherd's exit_status messages
-        6395078   wrong entry in sgepasswd file wrongly sets whole host in error state
2012     6402127   qconf -suserl reports incorrect status if no users are defined
-        6403152   qconf -as returns error code 0 even in case of unresolvable host
2015     6403810   JavaDocs for DRMAA need improvement
-        6428621   add a reserved complex value to control displaying Windows GUIs
-        6453426   Event clients will not get list updates, when they change their subscription after the registration
-        6461308   Wrong path to spooled parallel jobs with using classic spooling
2130     6501447   No online usage for MacOS X
2141     6506701   sge_shepherd dumps core on linux amd64 for qrsh jobs with very long cmdline (> 10k)
2233     6528950   modifying a RQS with invalid syntax results in its deletion
-        6533952   Admins guide does not mention that parallel environments must be linked with queues
-        6535768   Upgrade chapter 5 in 6.1 install guide must mention abolition of LD_LIBRARY_PATH for Solaris/Linux
-        6535775   Upgrade chapter in 6.1 Install Guide wrongly indicates upgrade from 5.3 were possible
-        6537476   6.1 install guide broken and incomplete wrts MySQL installation for ARCO
-        6537607   6.1 Admins guide needs improvement on the linking between queues and parallel environments
-        6539215   quota verification time may not grow with the number of queues
2224     6539792   resource quotas broken after qmaster restart
-        6542483   Important changes with Resource Quota chapter in 6.1 admins guide
-        6545277   sge_statistic tables are not documented
2230     6546370   Pivot for ARCo Accounting Queries does not show all the fields
2231     6546802   qstat -F -xml does not show resources


Bugs fixed in SGE 6.1_beta since release 6.1_preview2
-----------------------------------------------------

Issue    Sun BugId Description
-------- --------- ------------------------------------------------------------------------------------------
-        6267190   Typo before "About the urgent priority" in Admin Guide
1445     6291021   64 bit solaris BDB rpc server broken
1703     6295319   Admin guide: refers to sge_host(5) instead of host_conf(5)
-        6344917   Error in Embedded Command Line Options example
-        6395075   on Windows, execd doesn't provide useful error messages when SSL keys broken
2188     6421113   CSP mode auto installation: certificates are not copied to submit hosts
-        6444526   Admin guide describes N1GE backup facility, but restore is not described
2196     6472614   Auto installation option failed to save the install log
2182     6513433   remote installation of execd's need enhancement, rework, cleanup
2139     6506690   dbwriter should not use autocommit mode
-        6520257   need to define continuation character behaviour with qconf file formats
-        6521285   describe useful characters for every parameter
2185     6522385   qmon crash in cluster configuration dialog when modifying a host
2192     6525917   qacct -l h=<hostname> dumps core on darwin and linux itanium
2198     6528808   sge_ca script fails on nfs no root access file systems
2202     6530335   qmaster aborts when a resource quota set is modified while jobs are running
2204     6531317   qstat -xml does not show pending/zombie jobs
2206     6531921   qstat -r -xml is not working
2207     6533754   resource quota are modified on qconf -mrqs, even if the editor is exited without saving


Bugs fixed in SGE 6.1_preview2 since release 6.1_preview1
---------------------------------------------------------

Issue    Sun BugId Description
-------- --------- ------------------------------------------------------------------------------------------
-        5093930   ARCo should work with MySQL
-        5101053   Regular expressions should also be mentioned in qsub in addition to complex
-        5101735   Needs more boolean operators support for resource requests
56       6205203   Logical OR operator works only with complex attributes of type RESTRING
2135     6506115   Invalid qconf -mattr crashes qmaster
2150     6507572   qconf -Arqs added invalid RQS
2146     6510635   Default requests for complexes not honored by resource quotas
2161     6513944   qmaster core dump with usersets referenced in RQS
2162     6513967   unix groups are not considered by RQS
2166     6515122   add -wd working_dir in addition to -cwd option for submission
2008-09-15 16:30:57 +00:00