Commit graph

280871 commits

Author SHA1 Message Date
tsutsui
77e73423c9 textproc/Makefile: + unicode-character-database 2018-04-28 01:09:17 +00:00
tsutsui
11419c11bb textproc/unicode-character-database: import unicode-character-database-10.0.0
The Unicode Character Database (UCD) consists of a number of data files
listing Unicode character properties and related data. It also includes
data files containing test data for conformance to several important
Unicode algorithms. Full documentation for the UCD can be found in
Unicode Standard Annex #44, Unicode Character Database.
http://www.unicode.org/reports/tr44/

These data files are required by the latest ibus-1.5.18.
2018-04-28 01:07:59 +00:00
tsutsui
917bf09d7d doc: Updated textproc/cldr-emoji-annotation to 33.0.0.1 2018-04-28 01:01:17 +00:00
tsutsui
85037bce44 cldr-emoji-annotation: update to 33.0.0.1.
pkgsrc changes:

- use gmake to handle upstream configure.ac changes

Upstream announcement:
 http://cldr.unicode.org/index/downloads/cldr-33

Unicode CLDR 33 provides an update to the key building blocks for
software supporting the world's languages. This data is used by all
major software systems for their software internationalization and
localization, adapting software to the conventions of different
languages for such common software tasks.

This release had a limited submission phase. The focus was on
improvements to emoji keywords and to the Odia and Assamese locales,
addition of typographic names data, and improvements to the structure
for specifying keyboard layouts.
2018-04-28 01:00:52 +00:00
rillig
ce6481904d mk/tools/create.mk: revert filtering duplicate tool names
The "split" program is not managed by the tools framework. It just has a
wrapper that is placed into the same directory. This is confusing since
intuitively, "split" is a tool like many others.

The "duplicate script for target" warning from Make is therefore correct,
albeit obscure.

Currently, neither the pkgsrc infrastructure nor pkglint check for
allowed tool names.
2018-04-27 20:53:14 +00:00
bacon
2a080746cf Add biology/ncbi-blast+ 2018-04-27 20:37:47 +00:00
bacon
6801a45e0e Add ncbi-blast+ 2018-04-27 20:30:24 +00:00
bacon
6e68fec7bb biology/ncbi-blast+: import ncbi-blast+-2.7.1
The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity
between sequences. The program compares nucleotide or protein sequences to
sequence databases and calculates the statistical significance of matches.
BLAST can be used to infer functional and evolutionary relationships between
sequences as well as help identify members of gene families.

OK wiz@
2018-04-27 20:28:28 +00:00
rillig
6357c6f5e5 mk/tools/create.mk: sort tools before creating the wrapper targets
The TOOLS_CREATE variable is only ever appended to, without checking for
duplicates. In some rare cases, this produces warnings about
doubly-defined make targets. An example is adding USE_TOOLS+=strip to
pkgtools/pkglint:

".../mk/tools/create.mk" line 149: warning:
    duplicate script for target ".../work/.tools/bin/strip" ignored

The above line number 149 is zero-based, which in reality means the
duplicate definition is in line 150.
2018-04-27 20:16:36 +00:00
minskim
5eef0b63cc doc: Updated net/grpc to 1.11.0 2018-04-27 17:48:39 +00:00
minskim
0948fe78b4 net/grpc: Update to 1.11.0
Notable changes since 1.7.2:
- Requires protobuf>=3.5.0
- Exec_ctx has been made a thread_local, and is no longer to be passed
  as a function parameter.
- LB policies request re-resolution without shutting down
- On server, include receiving HTTP/2 settings in handshake timeout
- C++ headers are moved from include/grpc++ to include/grpcpp. Headers
  in include/grpc++ are deprecated
- Experimental gRPC-C++ Cocoapods podspec
- Several features of core have been removed from the surface or GPR
  API: grpc_alarm, gpr_join_host_port, gpr_cmdline, gpr_subprocess,
  gpr_tls, gpr_avl, and gpr_thd
- Add core underpinnings for TLS session ticket support
- Experimental support for configurable	retries
2018-04-27 17:47:27 +00:00
wiz
42c581bf13 doc: Updated x11/gtk3 to 3.22.30 2018-04-27 15:09:05 +00:00
wiz
3717fb4205 gtk3+: update to 3.22.30.
Overview of Changes in GTK+ 3.22.30
===================================

* gtk-demo has a new 'Widgetbowl' demo

* The wayland backend now supports the stable xdg-shell protocol

* Bugs fixed:
  #28 Adwaita: Selection mode styling flickers
  #83 Completion popup on non-default GdkDisplay freezes GtkFileChooserDialog
  #88 GtkSpinButton: Buttons aren't de/sensitised as they were in GTK+ 3
 #114 All Wayland apps crash when focused (gtk_gesture_multi_press_end→...
 #129 Segfault in `wl_proxy_marshal()`
 #132 GtkTextView auto-scrolling to insert mark upon focus changes due to...
 #141 GtkEntry: add a way to set the font to monospace
 #146 GtkExpander arrow is not dimmed when the Expander is not :sensitive
 #156 Transfer annotation for gtk_gl_area_new is incorrect
 #157 Crashes in gdkdisplay-wayland when clicking any button/menu item
 #163 Unable to explicitly set GtkModelButton role
 705509	notebook popup window on tabs shows underscores
 745128	Search is useless for translated app names
 748784	GtkProgressBar text cannot be superimposed on the progress bar
 791939	Add xdg-shell (stable) support
 792632	Emoji Chooser: section buttons have no tooltips
 793062	Crash under gdk_wayland_window_attach_image()
2018-04-27 15:08:55 +00:00
wiz
4bd8080533 doc: Updated misc/calibre to 3.22.1 2018-04-27 14:57:39 +00:00
wiz
42a4a06539 calibre: update to 3.22.1.
- version: 3.22.1
  date: 2018-04-19

  new features:
    - title: "Edit book: Add a tool to upgrade books from EPUB 2 to EPUB 3 (Tools->Upgrade book internals)"
      description: "Automatically upgrades metadata, converts the NCX table of contents and adds required manifest annotations"
      type: major

    - title: "Add support for the FBZ format (zipped FB2)"

    - title: "Kindle driver: Change the height of generated thumbnails to 500px, needed for the Oasis 2017"

    - title: "Edit book: When bulk renaming files add an option to rename by the order in which the files appear in the book."

    - title: "Polishing: Recognize titlepages that are marked as covers in the EPUB 3 landmarks section"

    - title: "Edit Book: Automatically updated the modified timestamp in the OPF when saving EPUB 3 books."

    - title: "Remove the ISBNDB metadata plugin as ISBNDB no longer allows free lookups."

  bug fixes:
    - title: "EPUB 3 metadata: If the book defines more than one author sort value for an author use the first instead of the last"

    - title: "Check Book: Dont warn for nav document not in spine in EPUB 3 books"

    - title: "Linux installer: Fix umask question not working with the recommended install command because stdin is a pipe"

    - title: "Browser viewer: Show an error message when trying to use the Sync function without being logged in"

    - title: "When setting cover from a PDF file and the user clicks cancel, do not delete the existing cover"
2018-04-27 14:57:29 +00:00
wiz
8b54a953f4 doc: Updated lang/vala to 0.40.4 2018-04-27 14:46:41 +00:00
wiz
c09e51f4aa vala: update to 0.40.4.
Vala 0.40.4
===========
 * Various improvements and bug fixes:
  - girparser: Add support for NoAccessorMethod metadata

 * Bindings:
  - glib-2.0: Mark str parameter of Variant.take_string() as owned
  - gstreamer: Update from 1.15+ git master
  - gtk+-*.0: Set NoAccessorMethod on Gtk.Radio*.group properties
    (Regression in gtk+-3.0)
  - gtk+-4.0: Update to 3.93.0+fc6018f1
  - json-glib-1.0: Mark return-type of gvariant_deserialize*() as nullable
  - webkit2gtk-4.0: Update to 2.20.1
2018-04-27 14:46:29 +00:00
wiz
ca59eeb7b6 doc: Updated security/py-certifi to 2018.4.16 2018-04-27 14:38:52 +00:00
wiz
7b8f46957d py-certifi: update to 2018.4.16.
No changelog found, assuming update to latest mozilla certs.
2018-04-27 14:38:41 +00:00
wiz
d06cf95fbf doc: Updated graphics/py-cairo to 1.17.0 2018-04-27 14:37:20 +00:00
wiz
7ae1e970c9 py-cairo: update to 1.17.0.
1.17.0 - 2018-04-15
-------------------

* :class:`cairo.Surface` and :class:`cairo.Device` can now be used as context
  managers. 🐛`103`
* Fix a leak when a cairo error was raised.
* Fix a leak when a mapped surface was GCed instead of unmapped.
* Make it possible to use the C API with Python 3 outside of the compilation
  unit doing the import by defining ``PYCAIRO_NO_IMPORT``. 🐛`110`
* Implement PEP 561 (added a py.typed marker)
2018-04-27 14:37:09 +00:00
wiz
f4e9748d5d doc: Updated graphics/libwebp to 1.0.0 2018-04-27 14:26:50 +00:00
wiz
f75a2a3fdb libwebp: update to 1.0.0.
- 4/2/2018: version 1.0.0
  This is a binary compatible release.
  * lossy encoder improvements to avoid chroma shifts in various circumstances
    (issues #308, #340)
  * big-endian fixes for decode, RGBA import and WebPPictureDistortion
  Tool updates:
    gifwebp, anim_diff - default duration behavior (<= 10ms) changed to match
                         web browsers, transcoding tools (issue #379)
    img2webp, webpmux - allow options to be passed in via a file (issue #355)
2018-04-27 14:26:41 +00:00
wiz
7b5eba52e9 mk: Describe tiff option. 2018-04-27 14:26:32 +00:00
wiz
80bbb11286 doc: Updated net/libsoup to 2.62.1 2018-04-27 14:24:35 +00:00
wiz
4121a52f09 libsoup: update to 2.62.1.
Changes in libsoup from 2.62.0 to 2.62.1:

	* Fix digest authentication with encoded URIs
	  [#794208, Claudio Saavedra]
	* Avoid unaligned memory accesses in WebSocket implementation
	  [#794421, Rolf Eike Beer]
	* Use base domain to decide if cookies are third-party
	  [#792130, Michael Catanzaro]
	* Fix crash under soup_socket_new()
	  [#762138, Milan Crha]
2018-04-27 14:24:26 +00:00
wiz
f0f79c01cf doc: Updated devel/libgsf to 1.14.43 2018-04-27 14:19:36 +00:00
hauke
7bbad617e6 Update GLPI to v9.2.3
From the release announcement:

* Hide closed tasks on central,
* Quick search in saved searches panel,
* Fix image in FAQ for anonymous users,
* Possibility to add an analytics javascript,
* Various fixes on components,
* And many more!

The full changelog is available here for more details:
https://github.com/glpi-project/glpi/milestone/24?closed=1
2018-04-27 14:19:29 +00:00
wiz
d69cd219a7 libgsf: update to 1.14.43.
libgsf 1.14.43

Morten:
	* Handle modtime for memory mapped files.

Corentin Noël and Rico Tzschichholz:
	* Introspection fixes.
2018-04-27 14:19:25 +00:00
wiz
1d471eae96 doc: Updated textproc/gsed to 4.5 2018-04-27 14:16:33 +00:00
wiz
07e2a53ee5 gsed: update to 4.5.
* Noteworthy changes in release 4.5 (2018-03-31) [stable]

** Bug fixes

  sed now fails when matching very long input lines (>2GB).
  Before, sed would silently ignore the regex without indicating an
  error. [Bug present at least since sed-3.02]

  sed no longer rejects comments and closing braces after y/// commands.
  [Bug existed at least since sed-3.02]

  sed -E --posix no longer ignores special meaning of '+','?','|' .
  [Bug introduced in the original implementation of --posix option in
  v4.1a-5-gba68fb4]

  sed -i now creates selinux context based on the context of the symlink
  instead of the symlink target. [Bug present since at least sed-4.2]
  sed -i --follow-symlinks remains unchanged.

  sed now treats the sequence '\x5c' (ASCII 92, backslash) as literal
  backslash character, not as an escape prefix character.
  [Bug present since sed-3.02.80]
  Old behavior:
     $ echo z | sed -E 's/(z)/\x5c1/' # identical to 's/(z)/\1/'
     z
  New behavior:
     $ echo z | sed -E 's/(z)/\x5c1/'
     \1
2018-04-27 14:16:23 +00:00
fhajny
83a5954a61 doc: Updated sysutils/liblognorm to 2.0.5 2018-04-27 14:07:04 +00:00
fhajny
c44acaadf2 sysutils/liblognorm: Update to 2.0.5.
- bugfix: es_str2cstr leak in string-to v1 parser
- make "make check" "succeed" on solaris 10
- some mostly cosmetic fixes detected by Coverity Scan
2018-04-27 14:06:56 +00:00
fhajny
a51dffc61b doc: Updated security/vault to 0.10.1 2018-04-27 14:02:49 +00:00
fhajny
d509f30245 security/vault: Update to 0.10.1.
DEPRECATIONS/CHANGES:

- `vault kv` and Vault versions: In 0.10.1 some issues with `vault kv` against
  v1 K/V engine mounts are fixed. However, using 0.10.1 for both the server
  and CLI versions is required.
- Mount information visibility: Users that have access to any path within a
  mount can now see information about that mount, such as its type and
  options, via some API calls.
- Identity and Local Mounts: Local mounts would allow creating Identity
  entities but these would not be able to be used successfully (even locally)
  in replicated scenarios. We have now disallowed entities and groups from
  being created for local mounts in the first place.

FEATURES:

- X-Forwarded-For support: `X-Forwarded-For` headers can now be used to set the
  client IP seen by Vault. See the TCP listener configuration
  page for details.
- CIDR IP Binding for Tokens: Tokens now support being bound to specific
  CIDR(s) for usage. Currently this is implemented in Token Roles; usage can be
  expanded to other authentication backends over time.
- `vault kv patch` command: A new `kv patch` helper command that allows
  modifying only some values in existing data at a K/V path, but uses
  check-and-set to ensure that this modification happens safely.
- AppRole Local Secret IDs: Roles can now be configured to generate secret IDs
  local to the cluster. This enables performance secondaries to generate and
  consume secret IDs without contacting the primary.
- AES-GCM Support for PKCS#11 [BETA] (Enterprise): For supporting HSMs,
  AES-GCM can now be used in lieu of AES-CBC/HMAC-SHA256. This has currently
  only been fully tested on AWS CloudHSM.
- Auto Unseal/Seal Wrap Key Rotation Support (Enterprise): Auto Unseal
  mechanisms, including PKCS#11 HSMs, now support rotation of encryption keys,
  and migration between key and encryption types, such as from AES-CBC to
  AES-GCM, can be performed at the same time (where supported).

IMPROVEMENTS:

- auth/approle: Support for cluster local secret IDs. This enables secondaries
  to generate secret IDs without contacting the primary
- auth/token: Add to the token lookup response, the policies inherited due to
  identity associations
- auth/token: Add CIDR binding to token roles
- cli: Add `vault kv patch`
- core: Add X-Forwarded-For support
- core: Add token CIDR-binding support
- identity: Add the ability to disable an entity. Disabling an entity does not
  revoke associated tokens, but while the entity is disabled they cannot be
  used.
- physical/consul: Allow tuning of session TTL and lock wait time
- replication: Dynamically adjust WAL cleanup over a period of time based on
  the rate of writes committed
- secret/ssh: Update dynamic key install script to use shell locking to avoid
  concurrent modifications
- ui: Access to `sys/mounts` is no longer needed to use the UI - the list of
  engines will show you the ones you implicitly have access to (because you have
  access to to secrets in those engines)

BUG FIXES:

- cli: Fix `vault kv` backwards compatibility with KV v1 engine mounts
- identity: Persist entity memberships in external identity groups across
  mounts
- identity: Fix error preventing authentication using local mounts on
  performance secondary replication clusters
- replication: Fix issue causing secondaries to not connect properly to a
  pre-0.10 primary until the primary was upgraded
- secret/gcp: Fix panic on rollback when a roleset wasn't created properly
- secret/gcp: Fix panic on renewal
- ui: Fix IE11 form submissions in a few parts of the application
- ui: Fix IE file saving on policy pages and init screens
- ui: Fixed an issue where the AWS secret backend would show the wrong menu
- ui: Fixed an issue where policies with commas would not render in the
  interface properly
- ui: Corrected the saving of mount tune ttls for auth methods
- ui: Credentials generation no longer checks capabilities before making
  api calls. This should fix needing "update" capabilites to read IAM
  credentials in the AWS secrets engine
2018-04-27 14:02:41 +00:00
fhajny
139cc4f4ee doc: Updated databases/py-peewee to 3.3.1 2018-04-27 13:53:08 +00:00
fhajny
0afbefeee2 databases/py-peewee: Update to 3.3.1.
- Fixed long-standing bug in 3.x regarding using column aliases with
  queries that utilize the ModelCursorWrapper (typically queries with
  one or more joins).
- Fix typo in model metadata code, thanks @klen.
- Add examples of using recursive CTEs to docs.
2018-04-27 13:52:59 +00:00
adam
01605df1df Updated lang/perl5, databases/p5-gdbm 2018-04-27 09:45:04 +00:00
adam
fa5693aa9b perl5: updated to 5.26.2
5.26.2:

Security
[CVE-2018-6797] heap-buffer-overflow (WRITE of size 1) in S_regatom (regcomp.c)
A crafted regular expression could cause a heap buffer write overflow, with control over the bytes written.
[CVE-2018-6798] Heap-buffer-overflow in Perl__byte_dump_string (utf8.c)
Matching a crafted locale dependent regular expression could cause a heap buffer read overflow and potentially information disclosure.
[CVE-2018-6913] heap-buffer-overflow in S_pack_rec
pack() could cause a heap buffer write overflow with a large item count.
Assertion failure in Perl__core_swash_init (utf8.c)
Control characters in a supposed Unicode property name could cause perl to crash. This has been fixed.

Updated Modules and Pragmata
Module::CoreList has been upgraded from version 5.20170922_26 to 5.20180414_26.
PerlIO::via has been upgraded from version 0.16 to 0.17.
Term::ReadLine has been upgraded from version 1.16 to 1.17.
Unicode::UCD has been upgraded from version 0.68 to 0.69.

Selected Bug Fixes
The readpipe() built-in function now checks at compile time that it has only one parameter expression, and puts it in scalar context, thus ensuring that it doesn't corrupt the stack at runtime.
Fixed a use after free bug in pp_list introduced in Perl 5.27.1.
Parsing a sub definition could cause a use after free if the sub keyword was followed by whitespace including newlines (and comments).
The tokenizer now correctly adjusts a parse pointer when skipping whitespace in an ${identifier} construct.
Accesses to ${^LAST_FH} no longer assert after using any of a variety of I/O operations on a non-glob.
sort now performs correct reference counting when aliasing $a and $b, thus avoiding premature destruction and leakage of scalars if they are re-aliased during execution of the sort comparator.
Some convoluted kinds of regexp no longer cause an arithmetic overflow when compiled.
Fixed a duplicate symbol failure with -flto -mieee-fp builds. pp.c defined _LIB_VERSION which -lieee already defines.
A NULL pointer dereference in the S_regmatch() function has been fixed.
Failures while compiling code within other constructs, such as with string interpolation and the right part of s///e now cause compilation to abort earlier.
2018-04-27 09:44:27 +00:00
adam
03b734dd4c Updated textproc/py-natsort, www/py-raven 2018-04-27 07:45:33 +00:00
adam
ec0424fb5c py-raven: updated to 6.7.0
6.7.0:
[Sanic] Added support for sanic.
[Core] Disabled dill logger by default
[Core] Added SENTRY_NAME, SENTRY_ENVIRONMENT and SENTRY_RELEASE environment variables
[Core] DSN secret is now optional
[Core] Added fix for cases with exceptions in repr
[core] Fixed bug with mutating record.data
2018-04-27 07:45:09 +00:00
adam
15c4166284 py-natsort: updated to 5.3.0
5.3.0:
Fix bug in assessing fastnumbers version at import-time.
Add ability to consider unicode-decimal numbers as numbers.
2018-04-27 07:00:41 +00:00
adam
842c0e36f9 Updated databases/py-sqlalchemy, databases/py-sqlalchemy-utils 2018-04-27 06:57:40 +00:00
adam
5852f5300d py-sqlalchemy-utils: updated to 0.33.2
0.33.2:
Added support for universal wheels.
Fixed usage of template0 and template1 with postgres database functions.
2018-04-27 06:57:21 +00:00
adam
7fceb18a7c py-sqlalchemy: updated to 1.2.7
SQLAlchemy release 1.2.7:
Release 1.2.7 includes some dialect-specific fixes as well as a small number of SQL and ORM related fixes.
2018-04-27 06:51:55 +00:00
adam
4658e4be51 Updated net/openvpn, security/py-m2crypto 2018-04-27 06:47:49 +00:00
adam
7f3c9ca1c4 py-m2crypto: updated to 0.30.0
0.30.0:
- Various small typos (Windows builds, Fix SSL.Connection.__del__)
- The project is now Linux-distribution agnostic
- Replace all old-style classes with the new ones (it shouldn't cause
  any problems, but feel free to file an issue, if it does)
- Do not by-pass a potential transfer decoding in m2urllib2
- Update M2Crypto.six with 1.11.0 and replace our local workarounds with
  new functions.
- SSLv3 just removed.
- Don't support Python 2.6 on Windows anymore. Windows users don't have
  python as a system package, so they are usually more likely to upgrade
  anyway.
2018-04-27 06:47:25 +00:00
adam
184f7f5d98 openvpn: 2.4.6
OpenVPN 2.4.6
management: Warn if TCP port is used without password

Correct version in ChangeLog - should be 2.4.5, was mistyped as 2.4.4
Fix potential double-free() in Interactive Service (CVE-2018-9336)
preparing release v2.4.6 (ChangeLog, version.m4, Changes.rst)

manpage: improve description of --status and --status-version

Make return code external tls key match docs

Delete the IPv6 route to the "connected" network on tun close
Management: warn about password only when the option is in use
Avoid overflow in wakeup time computation

Add missing #ifdef SSL_OP_NO_TLSv1_1/2

Check for more data in control channel
2018-04-27 06:40:28 +00:00
wiz
48683a024e multimedia/Makefile: add vlc2 2018-04-27 06:01:08 +00:00
minskim
72e385973c devel/cmake: -lcrypto should appear later in the command
This fixes PR pkg/53117.
2018-04-26 17:30:36 +00:00