Arka is a program that serves as a graphical interface for the programs from
the GP package.
Furthermore, it has some interesting functions of it's own. The main scope
of the program is the manipulation and visualisation of DNA / RNA / protein
sequences.
This package comes from pkgsrc-wip; created by <hdp at cs.nmsu.edu> with
several changes by me.
Fixes:
- Open a new document when launching another instance (Paolo Borelli)
- Do not open a document in another workspace (Paolo Borelli)
New and updated translations:
- Ahmad Riza H Nst (id)
- Adi Attar (xh)
- Nikos Charonitakis (el)
- Leonid Kanter (ru)
- Ivar Smolin (et)
- Adam Weinberger (en_CA)
- David Lodge (en_GB)
- Ilkka Tuohela (fi)
- Ercin Eker (tr)
http://cairographics.org/manual/cairo-Microsoft-Windows-Backend.html
Disabled backend: quartz
------------------------
Unfortunately, the quartz backend code is currently out of date with
respect to some recent backend interface changes. So, the quartz
backend is disabled in this snapshot.
If the quartz backend is brought up-to-date before the next snapshot,
we would be glad to make a 0.4.1 snapshot that re-enables it, (we do
not expect many more big backend interface changes).
API Changes
-----------
The font system has been revamped, (as Owen Taylor's work with
integrating pango and cairo gave us the first serious usage of the
non-toy font API).
One fundamental, user-visible change is that the cairo_font_t object
now represents a font that is scaled to a particular device
resolution. Further changes are described below.
cairo.h
-------
Removed cairo_font_set_transform and cairo_font_current_transform.
Added cairo_font_extents and cairo_font_glyph_extents. See
documentation for details:
http://cairographics.org/manual/cairo-cairo-t.html#cairo-font-extents
cairo-ft.h
----------
The cairo_ft_font API changed considerably. Please see the
documentation for details:
http://cairographics.org/manual/cairo-FreeType-Fonts.html
Performance
-----------
Make the fast-path clipping (pixel-aligned rectangles) faster.
Add optimization for applying a constant alpha to a pattern.
Optimize gradients that are horizontal or vertical in device space.
Xlib: When RENDER is not available, use image surfaces for
intermediate surfaces rather than xlib surfaces.
Backend-specific changes
------------------------
Glitz
-----
Major update to glitz backend. The output quality should now be just
as good as the image and xlib backends.
Track changes to glitz 0.4.0.
PDF
---
Various improvements to produce more conformant output.
Internals
---------
David Reveman contributed a large re-work of the cairo_pattern_t
implementation, providing cleaner code and more optimization
opportunities.
Backend interface changes
-------------------------
Rework backend interface to accept patterns, not surfaces for source
and mask.
Remove set_matrix, set_filter, and set_repeat functions.
More sophisticated backend interface for image fallbacks,
({acquire,release}_{source,dest}_image() and clone_similar).
Bug fixes
---------
Only install header files for backends that have been compiled.
Fixed some rounding errors leading to incorrectly placed glyphs.
Many other minor fixes.
API Addition
------------
Add new function:
void
pixman_add_trapezoids (pixman_image_t *dst,
int x_off,
int y_off,
const pixman_trapezoid_t *traps,
int ntraps);
Performance improvement
-----------------------
Restrict size of intermediate surface used while compositing
trapezoids based on the bounds of the desination surface.
Bug fixes
---------
Fix rendering on 64-bit platforms.
------
v4.0.2
------
[mms] Don't wrap flowed text in print view (Bug 1318).
[jan] Don't append trailer text twice if sending a message resumed from a
draft (Bug 1306).
[mms] Fix display of attachment names when forwarding messages (Bug 1300).
----------
v4.0.2-RC1
----------
[mms] Decode the contents of the preview messages.
[mms] Fix reload of underlying window after entering PGP or S/MIME passphrase
(Bug 1145).
[cjh] Fix recompose recovery of messages written before a session timeout
(Bug 1209).
[mms] Don't escape 'From' at the beginning of the line in text messages.
[mms] Fix 'smtphost' and 'smtpport' configuration parameters.
[jan] Add batchCompose API method.
[mms] Fix a (very rare) situation where a base64 encoded message is not decoded
correctly in forwards/replies (Bug 1077).
[mms] Fix forwarding as a digest from search folders (Bug 1263).
[cjh] Fix PHP notice after forwarding a message (Bug 1283).
[mms] Show, but don't activate current folder in "Move/Copy To" folder list
(Bug 1240).
[mms] Make sure we show container folders in the search screen folder list.
[mms] Don't show address book save link for PGP and S/MIME keys if no default
address book is configured (Bug 1144).
[mms] Require virtual folders to have a label (Bug 1160).
[jan] Speed up mailbox loading by caching processed email addresses.
[jan] Fix new mail notification popups in mailbox views (Bug 876).
[jan] Fix custom_login.php example script.
[cjh] Don't insert entries for emails that already exist when gathering
addresses from outgoing emails (Bug 1054).
[jan] Fix wrapping of header in mailbox view with IE (Bug 1110).
read counts (f_syncreads and f_asyncreads) in statfs nor statvfs. Also
do the same for write counts for consistency.
Problem reported by Leonard Schmidt <lems at gmx.net> in tech-pkg@.
performance/build/porting enhancements. The following list summarizes
the main new features in this release.sion.
CLDR 1.2.
This is the main new feature in the release. ICU locale data is now completely
built from the CLDR 1.2 data, which contains data for 232 locales, covering 72
languages and 108 territories. Many translated names for languages,
territories, and scripts have been added, as well as for time zones,
calendars, and other named items such as collation. For more information,
see http://www.unicode.org/press/pr-cldr1.2.html.
Miscellaneous
Universal Timescale conversions. ICU now provides mechanisms for quickly and
reliably converting between the different binary representations of date/time
used on different platforms.
Accept-Language. ICU provides a mechanism for matching Accept-Language against
a list of locales.
DateFormat and Calendar Performance. Object construction performance has been
significantly improved.
Footprint. The size of executables that statically link to ICU has been
reduced.
Stdin. The icuio library can now read from stdin.
UnicodeSet C API. More uset_* C API were added.
i5/OS (os/400). Building ICU has been simplified to allow more configure
options to work.
POSIX. Default codepage determination has been fixed.
The latest development release -- which is recommended for all users
by the mono project.
Major highlights include Nullable Types and Fixed Size Buffer features in the
compiler; Much more improved Windows.Forms implementations; Increased
performance, reduced memory usage.
See the detailed release notes here:
http://www.go-mono.com/archive/1.1.5/
implementation. with 2 bits/entry overhead!
The Google SparseHash project contains several hash-map implementations in use
at Google, with different performance characteristics, including an
implementation that optimizes for space and one that optimizes for speed.
SparseHash is a template library; there are no binaries to install.
SparseHash is distributed under the terms of the BSD License.
2005/03/06 .49 Added Russian language file, courtesy of Alexander Zverev
<tty@inbox.ru>
2005/03/05 Services will now accept multiple PROTOCTL messages from
the Unreal ircd (as implemented in Unreal CVS).
2005/03/04 Added support for +I/+j channel modes in Unreal 3.2.3.
Reported by Kieron Thwaites <ron2k@webmail.co.za>
2005/02/23 .48 Fix careless bug leading to possible crash on exit or rehash.
2005/02/23 .47 Channels no longer expire while an auto-op user is in the
channel; expiration is delayed until the time specified
by CSExpire after the last such user leaves the channel.
Reported by Anton Wolkov <phan70m@gmail.com>
2005/02/23 Added user IP addresses to the OperServ LISTUSER debug
command as well.
2005/02/21 .46 Fixed some warnings during compilation.
2005/02/21 Fixed bug causing modified files to not be recompiled
properly when compiling with GNU make 3.79.
2005/02/20 The OperServ debug command LISTUSERS now includes the IP
address for each user before the user's mode string.
2005/02/19 Added workaround for GCC bugs on PowerPC systems.
2005/01/27 Fixed careless error in "make distclean". Reported by
Stanislav Zahariev <sofit@evronet.tv>
2005/01/21 .45 Added HybServ support to convert-db. Suggested by
Stanislav Zahariev <sofit@evronet.tv>
2005/01/21 convert-db is now recompiled properly if the compilation
options passed to the configure script are changed.
2005/01/13 IRC operators are now properly shown the operator version
of ChanServ HELP LIST. Reported by Kieron Thwaites
<ron2k@webmail.co.za>
A Sequence Cleanup Program. Lucy is a utility that prepares raw DNA
sequence fragments for sequence assembly,possibly using the TIGR
Assembler. The cleanup process includes quality assessment,
confidence reassurance, vector trimming and vector removal. The
primary advantage of Lucy over other similar utilities is that it is a
fully integrated, stand alone program.
BUILDLINK_PREFIX.xmlcatmgr), and set the XMLCATMGR variable accordingly.
This is to let packages setting NO_BUILD to still be able to use this
variable (such as docbook-xml).
Fixes PR pkg/29789 by chris@.
Bugzilla bugs fixed (see http://bugzilla.ximian.com/show_bug.cgi):
#73237 - Junk and Filter settings missing from Receiving Options tab
(Sushma)
#73202 - connector crashes,restart evolution after changes in
'Receving options' (Sushma)
#72834 - Changes to 'Automatically synchronize account locally' check
box is not saved (Sushma)
#73017 - Remember password does not work (Sushma)
#72836 - Error message 'Errror scanning exchange folders' is displayed
always (Sushma)
#72881 - Asks for password twice for any changes in Account editor
(Sushma)
#72168 - Error message not clear while creating 'Calender' in offline
(Sivaiah)
#72951 - Delete operation for calender has to be deactivated in
offline (Sivaiah)
#73218 - Focus selection when adding other user's folder (Sushma)
#72389 - Quota warning message is issued even after contents of all
exchange folder contents are deleted (Sushma)
#72044 - Exchange storage hangs while importing contacts to 'Contact'
(Sivaiah)
#73470 - Select all + copy from personal to exchange doesnt work
(Sivaiah)
#73030 - Connector hangs while edit and save contact from mail (Sivaiah)
#73025 - Connector hanged while searching 'Email begins' with (Sivaiah)
#72041 - Exchange storage crashed while creating tasks (Sushma)
#73059 - Exchange connector hangs when 'Cancel' of meeting is accepted
(Sivaiah)
#72889 - In offline mode, Exchange connector hangs when user trys to
label a mail (Jeffrey)
#72943 - Connector hangs while deleting mail in offline (Jeffrey)
#73505 - Connector hangs, right click on occurence 'make this occurence
movable' (Sivaiah)
#67740 - Exchange storage crashed while updating meeting request to
'Tentativly Accept' (Sivaiah)
#72801 - Connector doesn't fall back to nt_domain => Can't logon
(Sushma)
#73712 - Create contact, switch to offline, disappears (Sivaiah)
#73673 - Mailer is broken (Sarfraaz)
#73498 - Offline: Mail folder properties not saved (Jeffrey)
#72986 - while switching from Offline to online doesnt synch changes
in mail (Jeffrey)
Fixed the handling of subscribe to folders (Sushma)
Fixed the handling of attachments in calendars and tasks (Sarfraaz)
Updated Translations :
----------------------
- cs (Miloslav Trmac)
- da (Martin Willemoes Hansen)
- en_GB (David Lodge)
- fi (Ilkka Tuohela)
- fr (Christophe Merlet)
- gu (Ankit Patel)
- hi (Rajesh Ranjan)
- hu (Laszlo Dvornik)
- nl (Vincent van Adrighem)
- pl (Artur Flinta)
- pt (Duarte Loreto)
- pt_BR (Raphael Higino)
- sq (Laurent Dhima)
- sr (Danilo Šegan)
Evolution 2.2.1.1, 2005-03-17
-----------------------------
Bugzilla bugs fixed (see http://bugzilla.ximian.com/show_bug.cgi):
* Calendar
#72983 - 'List' view has one entry for recurring appointment (Rodrigo)
* Mail
#73559 - Evolution filter crash when using Source Account criteria (Michael)
#71003 - threads still running at exit redux (Michael)
#73550 - HTML mails don't show if "prefer plain-text" plugin not active
(Michael)
Other bugs
* Plugins
- Set auth mechanism for transport and source when configuring exchange
(Sushma)
Evolution 2.2.1, 2005-03-15
---------------------------
Bugzilla bugs fixed (see http://bugzilla.ximian.com/show_bug.cgi):
* Addressbook
#73206 - Evolution crashed when clicked on 'Cancel' of LDAP authentication
(Siva)
* Calendar
#73563 - evolution-alarm-notify crashes after pressing snooze button (JP)
#72979 - Meeting is displayed as appointment in 'List view' (Chen)
#73501 - In 'Send Options' popup 'General Options' tab should be removed
for exchange (Sush)
* Mail
#73293 - unread messages becoming read do not update menu items (Michael)
#73139 - Not able to see the icons of Shared Folders (Vivek)
#73100 - Unify Evolution license text check box messages in Evolution
mailer (Michael)
#71733 - signature editor should set focus on title field (Harry Lu)
#73501 - In 'Send Options' popup 'General Options' tab should be removed
(Sushma)
* Plugins
#72807 - Switching from gw account crashes Evolution (Siva)
#73201 -Sharing tab is not present in the properties of a folder which has
a space in its name (Vivek)
Other bugs
* Calendar
- Fix memory leak in calendar views (Michael)
- Fix forward as icalendar (JP)
- Fix default color and selection on first run (JP)
* Mail
- Improved Post-To handling (Michael)
- Fix To/CC/BCC cut and paste (Hans)
* Plugins
- Don't return an invisible item in gw account setup (Michael)
- Handle assigned tasks in itip formatter (JP)
* All
- Clean up debug spew (Michael)
- Fix memory leak for gal view menus (Michael)
Updated translations:
-pl (GNOME PL Team)
-ja (Takeshi AIHANA)
-da (Martin Willemoes Hansen)
-fr (Christophe Merlet)
-ko (Changwoo Ryu)
-en_GB (David Lodge)
-tr (Baris Cicek)
-cs (Miloslav Trmac)
-de (Frank Arnold)
-sr (Danilo Segan)
-sr@Latn (Danilo Segan)
-es (Francisco Javier F. Serrador)
-pt_BR (Raphael Higino)
-sq (Laurent Dhima)
-fi (Hile Tuohela)
-gu (Ankit Patel)
-sv (Christian Rose)
-pt (Duarte Loreto)
-en_CA (Adam Weinberger)
Bugzilla bugs fixed (see http://bugzilla.ximian.com/show_bug.cgi):
* Addressbook
#73021 - The Add New Contact option is getting enabled if you try to
delete gw book (Siva)
#72878 - Changes sender email address makes unwanted changes in To/CC
fields (Michael)
* Calendar
#73141 - Crash if you try changing the group of a task to an offline
backend (Chen)
* Camel
#73015 - groupwise message threading workaround (Michael)
#70195 - Incorrect parsing of locale encoded From: header causes mess
on statusbar (Michael)
#70590 - Don't fall through to the default folder if we move (Michael)
#72876 - Message with blank reply-to cannot be replied to (Michael)
#73112 - imap fails errors after checking authentication type (Michael)
#72145 - All gw sent mail has a blank "To" field (Partha)
#73308 - gw mail getting marked as read when it shouldn't (Partha)
#72373 - new meeting invitations not showing up in Mailbox (Vivek)
#72455 - Messages are disappearing in the inbox of GW accounts (Vivek)
Other bugs
* Addressbook
- use a single global ref-counted db-env for all local books (Michael)
- exit properly when only internal books are left (JP)
* Calendar
- When coming back online get gw item changes in a thread for
responsiveness (Chen)
- "Peek" at gw calendar items so they don't get marked as read (Harish)
- Fix memory corruption in gw backend when fetching changes (Harish)
- Set exchange attachment store (Surf)
* Camel
- Allow flag syncing in read-only mode for imap based on PERMANENTFLAGS
(Jeff)
- Set priority in outgoing gw mail (Sankar)
Updated Translations:
- tr (Baris Cicek)
- pl (GNOME PL Team)
- pt (Duarte Loreto)
* Now compiles against gnutls 1.2.0 [57811]
* Fixed a bug that could result in 100% CPU usage if an SSL server closed
the connection uncleanly. [73352]
