adam
6bd0c30da6
Revbump for icu
2020-06-02 08:22:31 +00:00
rillig
65c39263a6
biology/ncbi-blast+: document possible array[char] bug
2020-05-25 05:19:06 +00:00
adam
d62c903eea
revbump after updating security/nettle
2020-05-22 10:55:42 +00:00
adam
24daafa112
Recursive revision bump after textproc/icu update
2020-04-12 08:27:48 +00:00
wiz
f669fda471
*: recursive bump for libffi
2020-03-08 16:47:24 +00:00
rillig
d93bec131e
biology: align variable assignments
...
pkglint -Wall -F --only aligned --only indent -r
2019-11-02 22:09:00 +00:00
wiz
84e123ddd2
Bump PKGREVISIONs for perl 5.30.0
2019-08-11 13:17:48 +00:00
wiz
c30c5fbc0b
*: recursive bump for nettle 3.5.1
2019-07-20 22:45:58 +00:00
bacon
e0b9b6ac10
biology/ncbi-blast+: Unbreak configure
...
Configure script does not support --enable-option-checking
Also add perl to USE_TOOLS
2019-06-28 20:17:35 +00:00
maya
f34a8c24a3
PKGREVISION bump for anything using python without a PYPKGPREFIX.
...
This is a semi-manual PKGREVISION bump.
2019-04-25 07:32:34 +00:00
ryoon
6fc378bce9
Recursive revbump from textproc/icu
2019-04-03 00:32:25 +00:00
bacon
385a79042f
ncbi-blast+: Upgrade to 2.8.1
...
Support for new BLAST database format
Increased makeblastdb output file size limit to 4GB
Other minor bug fixes and enhancements
OK wiz@
2019-01-07 15:00:10 +00:00
adam
16dd5de231
revbump after updating textproc/icu
2018-12-09 18:51:58 +00:00
ryoon
b9c1e1d533
Recursive revbump from textproc/icu-62.1
2018-07-20 03:33:47 +00:00
jperkin
5393242c73
*: Move SUBST_STAGE from post-patch to pre-configure
...
Performing substitutions during post-patch breaks tools such as mkpatches,
making it very difficult to regenerate correct patches after making changes,
and often leading to substituted string replacements being committed.
2018-07-04 13:40:07 +00:00
bacon
4cdd11c350
biology/ncbi-blast+: Respect env to support PKGSRC_USE_RELRO
...
Fix a previous patch that hard-coded relro support by patching in pkgsrc
CFLAGS, CXXFLAGS, and LDFLAGS instead.
OK wiz@
2018-05-22 21:37:29 +00:00
adam
8f438fb8df
ncbi-blast+: removed references to wip
2018-04-29 21:00:04 +00:00
bacon
6e68fec7bb
biology/ncbi-blast+: import ncbi-blast+-2.7.1
...
The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity
between sequences. The program compares nucleotide or protein sequences to
sequence databases and calculates the statistical significance of matches.
BLAST can be used to infer functional and evolutionary relationships between
sequences as well as help identify members of gene families.
OK wiz@
2018-04-27 20:28:28 +00:00
