Models and tests for departure from Hardy-Weinberg equilibrium and
independence between loci.
Fits models for genotypic disequilibria, as described in Huttley and
Wilson (2000), Weir (1996) and Weir and Wilson (1986). Contrast terms
are available that account for first order interactions between loci.
uni- and multivariable geostatistical modelling, prediction and
simulation
variogram modelling; simple, ordinary and universal point or block
(co)kriging, sequential Gaussian or indicator (co)simulation;
variogram and map plotting utility functions.
Classes and methods for handling genetic data. Includes classes to
represent genotypes and haplotypes at single markers up to multiple
markers on multiple chromosomes. Function include allele frequencies,
flagging homo/heterozygotes, flagging carriers of certain alleles,
estimating and testing for Hardy-Weinberg disequilibrium, estimating
and testing for linkage disequilibrium, ...
Climate analysis and downscaling package for monthly and daily data.
The package contains R functions for retrieving data, making climate
analysis and downscaling of monthly mean and daily mean global climate
scenarios.
Combine multi-dimensional arrays. This is a generalization of cbind
and rbind. Takes a sequence of vectors, matrices, or arrays and
produces a single array of the same or higher dimension.
RArcInfo is a package for the R statistical program to import
Arc/Info V7.x binary coverages. It is based on the library Avcelib
written by Daniel Morissette.
Currently, RArcInfo supports most of the file formats stored by these
type of coverages. The geographical information (arcs, polygons,
topological relationships, etc.) are stored using lists, but all the
tables containing related information are imported into a data frame.
Once the desired data are imported, the user can draw maps, even filling
the polygons according to the value of a given covariate. Although R is
not designed for heavy G.I.S. work, this package is very helpful to work
with binary coverages inside R.
Includes HTML function and methods to write in an HTML output.
Thus, making HTML reports is easy. Includes a function that allows
redirection on the fly, which appears to be very usefull for
teaching purpose, as the student can keep a copy of the produced
output to keep all that he/she did during the course
Package comes with a vignette describing how to write HTML reports
for statistical analysis. Finally, a driver for Sweave allows to parse
HTML flat files containing R code and to automatically write the
corresponding outputs (tables and graphs).
Interface between GRASS 5.0 geographical information system
and R, based on starting R from within the GRASS environment
using values of environment variables set in the GISRC file.
Interface examples should be run outside GRASS, others may
be run within. Wrapper and helper functions are provided for
a range of R functions to match the interface metadata
structures.
consists of data sets and functions with our (John Maindonald
and John Braun's) book, Data Analysis and Graphics Using
R, published by Cambridge University Press.
those packages that currently use ${MASTER_SITE_R_CRAN:=foo} as their
HOMEPAGE. As the HOMEPAGE is a single URL, not a list of URLs, the
MASTER_SITE variables cannot be used for this.
Changes:
- Made library work with constant strings passed as input to matho_process().
- Added "set bold_colors" option. Use this if equations are difficult to read.
- Removed "doc/ctips.html".
- Cleaned up and improved makefiles.
- Fixed bug in "compile.secure".
scilab update. Add a note in the Makefile to prevent this in the
future.
- add Version.incl to the buildlink files. That is needed to allow
add ons to determine the scilab version. Currently no pkgs are using
this, but that will change soon.
gnucash uses libguppi do do various graphical rendering activities.
A bug in the libraries bar-charting code means that the labels
on bar-charts are attached to the wrong objects, so attempting
to open a sub-chart results in the wrong entry being selected
(click on the first entry and the last one is displayed, click on
the last and the first).
Unfortunately, it would appear that guppi is no-longer being actively
maintained, so there might not be a further release of this library.
The attached patch is included in several source RPMS for Linux
(and apparently was committed to the guppi source CVS).
Bump PKGREVISION.
Overview of changes in gcalctool 5.6.31
* Generated release for GNOME 2.12.0 (Final)
----
Overview of changes in gcalctool 5.6.30
* Fixed bug #314540. The libparser.a library needs ranlib run on it
for Mac OS X.
----
Overview of changes in gcalctool 5.6.29
* Fixed bug #314375. Replaced usage of malloc.h with stdlib.h in
syntax_translation.c
----
Overview of changes in gcalctool 5.6.28
* Generated release for GNOME 2.12 (RC)
* Changed type of argument in paren_disp from char to int for 64bit.
----
Overview of changes in gcalctool 5.6.27
* Fixed bug #313255. The definitions for BUT_<n>_BAS in gtk.c were incorrect.
----
Overview of changes in gcalctool 5.6.26
* Generated release for GNOME 2.11.91 (beta2).
----
Overview of changes in gcalctool 5.6.25
* Fixed bug #311306. If the user was in View->Scientific with base Bin,
Oct or Hex and then went to View->Basic, then returned to View->Scientific,
some of the numeric keys were incorrectly greyed out.
----
Overview of changes in gcalctool 5.6.24
* Fixed bug #310849. Gcalctool no longer crashes when pressing the "B"
button (or typing Shift-B).
----
Overview of changes in gcalctool 5.6.23
* Fixed bug #310791. Memory register window view logic was screwed.
----
Overview of changes in gcalctool 5.6.22
* Fixed bug #310441. Adjusted code to compile with gcc 2.95.2.
----
Overview of changes in gcalctool 5.6.21
* Fixed bug #153854. When the user changes modes, a warning dialog is
displayed to let them know that their current display will be cleared
and the base reset to decimal. The user has the option of checking a
toggle box on the dialog, that will prevent this warning from being
displayed again.
----
Overview of changes in gcalctool 5.6.20
* Fixed bug #309294. Adjustments to allow gcalctool to successfully build
on Solaris with pkgconfig >= 0.17.1.
----
Overview of changes in gcalctool 5.6.19
* Fixed bug #309182. In non-arithmetic precdence mode, gcalctool can now
correctly change the sign of the exponent on scientific numbers again.
----
Overview of changes in gcalctool 5.6.18
* Fixed bug #308408. gcalctool can now correctly convert the hexadecimal
numbers "A-F" to other bases in "use arithmetic operator precedence mode".
----
Overview of changes in gcalctool 5.6.17
* Fixed bug #305619. Calculations with stored register values in arithmetic
operator precedence mode, now work correctly.
----
Overview of changes in gcalctool 5.6.16
* Fixed bug #305034. In "Use Arithmetic Precedence" mode, when switching
the format (e.g. from ENG to FIX), the displayed value switches to zero
(in the corresponding format, so e.g. 0.0 or 0e+0, ...).
----
Overview of changes in gcalctool 5.6.15
* Fixed bug #305467. gcalctool no longer crashes under the following
scenerio:
- type "f" to bring up the user function menu.
- dismiss the menu by clicking elsewhere with the mouse.
- type another character which isn't in the range "0" to "9".
----
Overview of changes in gcalctool 5.6.14
* Did a gcalctool tarball release.
----
Overview of changes in gcalctool 5.6.13
* Fixed bug #304056. Adjusted the keyboard shortcuts for the Xor and x^y
operations. New values are:
Xor - 'x'
x^y - '^'
----
Overview of changes in gcalctool 5.6.12
* Fixed bug #302555. Various gcalctool variables have now been const'ified.
----
Overview of changes in gcalctool 5.6.11
* Fixed bug #300957. Replaced the underscore character in
"translator_credits" with a hyphen, to prevent some
translation tools from being confused.
----
Overview of changes in gcalctool 5.6.10
* More work on bug #172704.
- Adjusted the code to not try to display a menu when the user
entered a left parentheses (another do_pending() type of operation).
- Toggling the "Show Trailing Zeroes" operation via keyboard
shortcuts, needed to clear the v-.pending flag.
----
Overview of changes in gcalctool 5.6.9
* Fixed up some problems reported by lint.
----
Overview of changes in gcalctool 5.6.8
* Fixed bugs #172704 and #172869. When the user now uses the keyboard shortcut
for any of the gcalctool buttons that have a menu associated with them, that
menu is now displayed. The user can use the arrow keys to select a menu item
or the menu items shortcut.
----
Overview of changes in gcalctool 5.6.7
* Fixed bug #171393. Allow stock labels to show through.
----
Overview of changes in gcalctool 5.6.6
* Refixed bug #158280. The Help->Contents menu item no longer appears if
gcalctool is built Gtk-only.
----
Overview of changes in gcalctool 5.6.5
* Fixed bug #172798. gtk_set_locale was already being run by gtk_init()
and the gtk about popup didn't have the gcalctool icon.
----
Overview of changes in gcalctool 5.6.4
* Fixed Sun internal CR #6214176. If gcalctool is being driven by gok,
the on-screen keyboard assistive technology, it's possible that the
event returned by gtk_get_current_event() is NULL. If this is the
case, we need to fudge the popping up on the menu associated with
this menu button.
----
Overview of changes in gcalctool 5.6.3
* Fixed bug #158280. You can now build gcalctool without the GNOME
libraries by specifying "--disable-gnome" on the configure command
line.
----
Overview of changes in gcalctool 5.6.2
* Fixed bug #167479. gcalctool with set the View->Memory Registers menu
item inactive if the calculator is in Basic mode.
----
Overview of changes in gcalctool 5.6.1
* Fixed bug #168694. gcalctool now saves/restores the ten memory
register values as gconf resources.
* Removed the redundant process_str() routine in graphics.c
----
Overview of changes in gcalctool 5.6.0
* Fixed bug #169196. gcalctool now uses use g_get_home_dir().
* Added in a better implementation of the trig_filter() routine in
functions.c
Changes:
- Perfected process() (the input processor).
- Code cleanup.
- Display polar coordinates in roots command.
- Parse "**" as "^".
- The docs were clarified.
- Increased sizes of many input buffers.
* What is new in gsl-1.7:
** Switched gsl_randist_binomial to use the faster binomial random
variate TPE algorithm by default. The previous binomial variate
algorithm is available as gsl_randist_binomial_knuth. This will
result in a different sequence of binomial variates in programs using
this function.
** Improved the algorithm for gsl_sf_elljac_e to avoid cancellation
errors near quarter periods.
** Fixed the branch selection in gsl_sf_gamma_inc_Q_e to avoid
inaccurate results for large a,x where x~=~a.
** The multilinear fitting functions now have forms which accept a
user-specified tolerance for the SVD cutoff and return the
corresponding effective rank of the design matrix.
** The quadratic solvers in poly/ now handle linear equations
gracefully (i.e. quadratrics with a leading coefficient of zero).
** The output of "make check" now only shows test failures by default,
to reduce the amount of output. Set the environment variable
GSL_TEST_VERBOSE=1 to display all the output. To assist debugging,
the test number of each failure is shown in square brackets at the
line-end [NNNN].
** Fixed bugs in gsl_linalg_SV_decomp_jacobi which caused
incorrect results for some input matrices.
** Bessel, coulomb, dilogarithm and legendre_H3d functions now use
hypot internally to avoid overflow when computing terms like
sqrt(1+x*x).
** The 'Usage' chapter of the reference manual now explains how to
handle deprecated functions using the GSL_DISABLE_DEPRECATED macro.
** The conflicting enum definitions for 'forward' and 'backward' in
gsl_ftt.h and gsl_wavelet.h are deprecated. User code should switch
to the new definitions gsl_fft_forward, gsl_fft_backward,
gsl_wavelet_forward and gsl_wavelet_backward. Selectively define
GSL_DISABLE_DEPRECATED before including the headers to use the new
definitions on either or both modules.
** Fixed an error in the the brent minimisation algorithm. Iterations
should now follow Brent's original description correctly.
** The bound coulomb function gsl_sf_hydrogenicR_e no longer reports
an underflow for exact zeroes of the wavefunction.
** gsl_linalg_SV_decomp_jacobi now reports an error for the
unimplemented case M<N correctly.
** Fixed conformance test for the SYRK and HERK blas functions
gsl_blas_{s,d,c,z}syrk and gsl_blas_{c,z}herk for non-square matrices.
** Configure now checks for presence of ieeefp.h if needed.
** Differential equation solvers now propagate error codes returned
from user-defined functions to the top-level in all cases.
** Sort functions now avoid an infinite loop if Nans are present in
the input vector. The order of nans in the output is undefined,
although other elements will be sorted correctly.
Changes:
- The C complex number library was finished and perfected (complex_lib.c).
- Yet another code cleanup.
- Added "UNIX" compile-time define to the Prime Number Tools.
- Some improvements to the Mathomatic documentation.
While I dislike moving pkgs around and forcing users into updates I'm
making an exception here, because this is a leaf pkg, we don't
support gnumeric-1.2 anymore and because gnumeric-1.4 is fully
compatible to older sheets tbomk. Sorry for breaking pkgchk.conf though.
Fixed
- src/kernel/sparcv8/MakeVar.SH missing from MANIFEST (hence from tarball)
- stack corruption in matsnf() [ when GC occurs ]
- incorrect result in gaffsg(s < 0, t_PADIC)
- [hi-res plot: X-Windows] rescaling bug
- [ix86 + gcc]: fix "invalid preprocessing token" Warning
- removed hack in buchall() [ function called through unappropriate
type (in init mode) to avoid inserting irrelevant arguments ]. Caused
some compiler to produce incorrect code (SEGV).
- typo in isabsolutepol(): SEGV in factorff for some t_POLs
defined over the prime field
- inconsistent error message when starting 'gp -p 436273000'
- Configure support for GNU/Hurd
- Fixed a potential crash after saving patterns.
- Removed -mpentiumpro from the Makefile.
- Zoom 1:1 and 16:1 buttons are now grayed out when appropriate.
- Rearranged zoom buttons to be more logical.
Main Changes Scilab 3.0 -> 3.1
=========================
The new features of Scilab 3.1 are the following:
- "xgetmouse", "eventhandler" event set extended to click, double-click, <Ctrl> Key. See more details in xclick and xgetmouse on line help.
Warning: Because of distinction of click events, some users' scripts can have a different behavior.
To make it work as before please check and modified test on events as follow:
supposing that button contains the value returned by xclick (left most argument) or xgetmouse (third componant of returned vector) then replace test like:
button==0 by or(button==[0,3])
button==1 by or(button==[1,4])
button==2 by or(button==[2,5])
- Integration of the ATLAS library (specific Windows version).
During the installation of Scilab, dynamic library (Atlas.dll) is automatically chosen according to the CPU detected. See details in the Atlas.spec file under scilab\bin directory.
- Java interface written to allow calling Scilab computational engine from Java
- TCL interface has been totally rewritten (for better error detection and better data transfert). ScilabEval improve to handle synchronism.
For your information you should know that tcl8.4 segfault when running on Linux 2.6 kernels on machines with 2 or more processors.
- Scipad editor
o A debugging tool is now available.
o Drag'n'drop is now supported.
o User settings and text colors are now configurable and saved across editing sessions.
o Find/Replace debugged and improved.
o Quick access in the file menu for recently opened/saved files.
o Creation of XML help page templates and xmltohtml compilation available from within Scipad.
o Identification of Scilab predefined variables and library functions in scilab scripts.
o Scipad is easily localized. Today English, German, French, Swedish and Italian languages are supported.
o Miscellaneous file management improvements: readonly flag, absolute pathnames to files, pruned pathnames display, revert to saved feature.
- Graphics editor completed
o Axes structure totally rebuild.
New axes properties available (see manual and type 'gca()' for a complet listing), z logscale enable, axes inversion.
o Save and load had been extended to graphics handle
o 'plot' macro added to scilab to mimic the "matlab plot" behavior (type "help plot" for more info.)
o 'surf' macro added to scilab to mimic the "matlab surf" behavior (type "help surf" for more info.)
Graphics entities are associated to Scilab variables of type handle. The handle is a unique identifier which is associated to each instance of a created graphics entity. Using this handle, it will be possible to reach entities properties through "set" and "get" routines. The handles are also used to manipulate graphics objects, to move them, to copy or delete them.
Enter "help graphics_entities" at Scilab prompt for more details.
- Scicos block set has been extended/revisited to be more compatible with Simulink one, compiler, code generator and implicit system simulator have been improved.
- Configure adapted to linux 64bit architectures
- Improvement of the integration of Visual Studio Compiler to the dynamic links: findmsvccompiler() and configure_msvc() macros have been added
- The source files have been updated to optimise the compiled version built with VC6 tool
Please note that the Windows binary version provided on our Web site is built with .NET
- Sparse operations and functions like real, imag, matrix, spones revisited to improve efficiency
- Bessel functions extended to work in the complex case (using Slatec routines)
Incompatibilities: The semantics of besseli, besselj, besselk and bessely functions has been changed and extended.
The oldbesseli, oldbesselj, oldbesselk and oldbessely correspond to the old obsolete semantics.
- New Matlab functions implemented in m2sci translator
- Functions to read Excel files
- Font rotation is now possible under Xwindow
- home variable (%HOME%) defined under Windows: c:/Documents and Setting/USER
- New environment variable SCIHOME:
o Under Windows: %HOME%\scilab\SCILAB_VERSION
o Under Linux: $HOME/USER/.scilab/SCILAB_VERSION
- New primitives:
o clipboard (specific Windows)
o perl
o calendar
o mkdir
o rmdir
o copyfile
o sleep
o getos
o setenv
o getshortpathname (specific Windows)
o getlongpathname (specific Windows)
o toolbar (specific Windows)
o hidetoolbar (specific Windows)
o console (specific Windows)
o mcisendstring (specific Windows)
o banner
o winqueryreg (specific Windows)
o xls_open
o xls_read
o scicos_debug_count
Changes:
- Created "complex.h".
- Fixed and documented "help all >filename", for quickly creating a
quick command reference.
- Fixed up and commented "main.c".
- Split off "complex.c" into "complex_lib.c" and made it an
independent complex number library.
- Added "integrate definite" command option.
- Corrected makefile install.
- Added check in nintegrate command to fail if result contains
infinity or nan.
- A few complex number improvements were made.
- Allow a text pre-processor to pipe input into Mathomatic.
1) Simplify the way how an emacs version is picked when no emacs
is installed, but a user try to install an Emacs Lisp package.
Just pick up the version set as EMACS_TYPE than searching for
versions already installed etc. If the EMACS_TYPE version is
not supported by the Emacs Lisp Package, just fail. EMACS_TYPE
be default to GNU Emacs 21.
(In other words, users should set EMACS_TYPE as they want.
Otherwise GNU Emacs 21 is used.)
2) All Emacs Lisp Packages *must* prepend EMACS_PKGNAME_PREFIX to
a) the PKGNAME itself, and b) PKGNAME in its dependency lines.
EMACS_PKGNAME_PREFIX is expanded to "xemacs-" when XEmacs is
used. This keeps dependency graph of Emacs-Lisp-packages-
installed-for-XEmacs consistent.
3) Document EMACS_* variables as much as possible.
4) Provide more cookies for PLIST. Maybe utilized later.
Note that the 2) change doesn't affect the default, GNU Emacs 21
behaviour. So no version / revision bumps in this commit.
Changes:
- Fixed minor bug in real and imaginary commands.
- Fixed roots command.
- Cleaned up Prime Number Tools man pages.
- Cleaned up the Mathomatic source code.
- Corrected the Mathomatic library.
- Ported taylor command to non-equations.
file's sole purpose was to provide a dependency on pkg-config and set
some environment variables. Instead, turn pkg-config into a "tool"
in the tools framework, where the pkg-config wrapper automatically
adds PKG_CONFIG_LIBDIR to the environment before invoking the real
pkg-config.
For all package Makefiles that included pkg-config/buildlink3.mk, remove
that inclusion and replace it with USE_TOOLS+=pkg-config.
will install Perl modules into the "vendor" directories:
chat/vicq math/udunits
databases/rrdtool mbone/beacon
devel/p5-subversion
Bump their PKGREVISIONs.
* textread now returns cell arrays
* use new gnuplot interface for functions
* fix rand bug on non-intel architectures
* more econometrics functions
* new functions: randg, cellfun, cell2mat, bwarea, imresize, savepath
* bug fixes and improvements (see ChangeLog for details)
Remove requirement glib-2.0 >= 2.4 and require libxml2 >= 2.3.8
Do not use unicode prefix names for long names
Add even(), odd() and shift() functions and operators "<<" and ">>"
Compile with kdelibs and Qt >= 3.1 (KDE)
Add glib-2.0 and libxml-2.0 to PKG_CHECK_MODULES (KDE)
Display prefix in object info (KDE)
Confirm overwriting result and plot image files (KDE)
Use KIO instead of wget for fetching exchange rates (KDE)
Close gnuplot and disable save button when no series defined (KDE)
Changes:
- Added variable "error_str", which is set to the last error message
when SILENT is defined.
- Improvement in giving reason when solving fails.
- The HTML docs were fixed.
Changes:
- Bug fix made to divide command.
- Increased the number of equation spaces to 100.
- Fixed a precision problem with the "list export" command.
- Added and implemented function return_result(equation_number) at the
end of most commands, to facilitate use as a library.
- Some more comments were added and "list.c" was cleaned up.
- Replaced most printf()s with a new function called error().
