0f55c4012d
Long awaited bug fix release Also unbundled htslib Changes: https://github.com/pachterlab/kallisto/tags
39 lines
1.1 KiB
Makefile
39 lines
1.1 KiB
Makefile
# $NetBSD: Makefile,v 1.4 2022/02/27 01:57:27 bacon Exp $
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DISTNAME= kallisto-0.48.0
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CATEGORIES= biology
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MASTER_SITES= ${MASTER_SITE_GITHUB:=pachterlab/}
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GITHUB_TAG= v${PKGVERSION_NOREV}
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MAINTAINER= bacon@NetBSD.org
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HOMEPAGE= https://pachterlab.github.io/kallisto/
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COMMENT= Quantify abundances of transcripts from RNA-Seq data
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LICENSE= 2-clause-bsd
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USE_TOOLS+= autoconf gmake pax
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USE_LANGUAGES= c c++
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USE_CMAKE= yes
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SUBST_CLASSES+= test
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SUBST_STAGE.test= pre-configure
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SUBST_FILES.test= kallisto-test
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SUBST_SED.test= -e 's|/usr/local/share/kallisto|${DATADIR}|g'
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CMAKE_ARGS+= -DUSE_HDF5:BOOL=ON
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INSTALLATION_DIRS+= ${DATADIR}
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DATADIR= ${PREFIX}/share/kallisto
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post-extract:
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${CP} ${FILESDIR}/kallisto-test ${WRKSRC}
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${RM} -rf ${WRKSRC}/ext/htslib
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post-install:
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${INSTALL_SCRIPT} ${WRKSRC}/kallisto-test ${DESTDIR}${PREFIX}/bin
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cd ${WRKSRC} && pax -rw test ${DESTDIR}${DATADIR}
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.include "../../devel/hdf5/buildlink3.mk"
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.include "../../archivers/libaec/buildlink3.mk"
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.include "../../devel/zlib/buildlink3.mk"
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.include "../../biology/htslib/buildlink3.mk"
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.include "../../mk/bsd.pkg.mk"
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