pkgsrc/biology
bacon 385a79042f ncbi-blast+: Upgrade to 2.8.1
Support for new BLAST database format
Increased makeblastdb output file size limit to 4GB
Other minor bug fixes and enhancements

OK wiz@
2019-01-07 15:00:10 +00:00
..
arka Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
azara Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
bcftools bcftools: added version 1.9 2018-11-15 09:21:24 +00:00
bioperl Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
bodr Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
bwa Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
canu biology/canu: import canu-1.8 2019-01-07 02:33:17 +00:00
cdhit Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
chemical-mime-data chemical-mime-data: comment out dead sites 2017-12-24 09:42:12 +00:00
chemtool Revbump after cairo 1.16.0 update. 2018-11-14 22:20:58 +00:00
clustalw Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
coalesce Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
fastDNAml Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
fluctuate Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
gabedit Revbump after cairo 1.16.0 update. 2018-11-14 22:20:58 +00:00
genesplicer Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
glimmer Sort PLIST files. 2018-01-01 22:29:15 +00:00
gnome-chemistry-utils Revbump after cairo 1.16.0 update. 2018-11-14 22:20:58 +00:00
gp Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
gromacs Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
hmmer Convert all occurrences (353 by my count) of 2017-01-19 18:52:01 +00:00
htslib revbump for boost 1.69.0 2018-12-13 19:51:31 +00:00
kallisto biology/kallisto: import kallisto-0.45.0 2018-12-21 19:00:56 +00:00
lucy Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
mopac Fix build. 2015-12-26 22:36:07 +00:00
mpqc Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
mummer Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
ncbi-blast+ ncbi-blast+: Upgrade to 2.8.1 2019-01-07 15:00:10 +00:00
nut Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
openbabel Revbump after cairo 1.16.0 update. 2018-11-14 22:20:58 +00:00
p5-Bio-ASN1-EntrezGene Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
pdbalign Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
phylip Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
plink Cleanup: replace curly braces with parentheses. 2018-01-01 01:10:13 +00:00
plinkseq biology/plinkseq: Requires c++11 to build with protobuf-3.6.0 2018-08-04 21:42:28 +00:00
primer3 Mark packages that require C++03 (or the GNU variants) if they fail with 2018-07-18 00:06:10 +00:00
profit Moved documentation to share/doc/${PKGBASE}. Bumped PKGREVISION. 2016-07-24 21:11:52 +00:00
puzzle Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
py-mol extend PYTHON_VERSIONS_ for Python 3.7 2018-07-03 05:03:01 +00:00
py-pydicom py-pydicom: Update to 1.2.1. 2018-12-05 10:09:09 +00:00
rasmol Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
samtools samtools: updated to 1.9 2018-11-06 10:49:41 +00:00
sewer Sort PLIST files. 2018-01-01 22:29:15 +00:00
stacks biology/stacks: import stacks-2.2 2018-12-22 21:52:06 +00:00
stride Comment out dead sites. 2017-09-04 18:00:49 +00:00
trimmomatic biology/trimmomatic: import Trimmomatic-0.38 2018-07-25 15:14:32 +00:00
xylem xylem: build fix 2018-09-29 12:49:55 +00:00
Makefile Add canu 2019-01-07 02:34:21 +00:00