pkgsrc/biology
2023-01-29 21:14:22 +00:00
..
ad2vcf Change MAINTAINER= to OWNER= on mission-critical packages 2022-12-28 15:27:15 +00:00
arka biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
atac-seq py-macs2: does not support python 2.x 2023-01-29 00:33:04 +00:00
azara Bump all dependent packages of wayland (belatedly) 2022-08-11 05:08:00 +00:00
balance-tui biology/balance-tui: update to 0.1.1 2022-12-03 17:13:45 +00:00
bcftools Change MAINTAINER= to OWNER= on mission-critical packages 2022-12-28 15:27:15 +00:00
beagle biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
bedtools *: Revbump packages that use Python at runtime without a PKGNAME prefix 2022-06-30 11:18:01 +00:00
biolibc Change MAINTAINER= to OWNER= on mission-critical packages 2022-12-28 15:27:15 +00:00
biolibc-tools Change MAINTAINER= to OWNER= on mission-critical packages 2022-12-28 15:27:15 +00:00
bioperl *: recursive bump for perl 5.36 2022-06-28 11:30:51 +00:00
bodr massive revision bump after textproc/icu update 2022-11-23 16:18:32 +00:00
bowtie2 Change MAINTAINER= to OWNER= on mission-critical packages 2022-12-28 15:27:15 +00:00
bwa Change MAINTAINER= to OWNER= on mission-critical packages 2022-12-28 15:27:15 +00:00
canu *: Recursive revbump from Boost 1.81.0 2023-01-22 16:28:12 +00:00
cdhit *: recursive bump for perl 5.36 2022-06-28 11:30:51 +00:00
chemical-mime-data biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
chemtool *: Recursive revbup from graphics/freetype2 2023-01-29 21:14:22 +00:00
clustalw biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
coalesce biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
coordgenlibs *: Recursive revbump from Boost 1.81.0 2023-01-22 16:28:12 +00:00
fasda Change MAINTAINER= to OWNER= on mission-critical packages 2022-12-28 15:27:15 +00:00
fastDNAml biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
fastp biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
fastq-trim Change MAINTAINER= to OWNER= on mission-critical packages 2022-12-28 15:27:15 +00:00
fastqc *: recursive bump for perl 5.36 2022-06-28 11:30:51 +00:00
fastx-toolkit *: recursive bump for perl 5.36 2022-06-28 11:30:51 +00:00
filter-fastq *: Revbump packages that use Python at runtime without a PKGNAME prefix 2022-06-30 11:18:01 +00:00
fluctuate biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
gabedit *: Recursive revbup from graphics/freetype2 2023-01-29 21:14:22 +00:00
generand Change MAINTAINER= to OWNER= on mission-critical packages 2022-12-28 15:27:15 +00:00
genesplicer biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
gffread biology/gffread: GFF/GTF format conversions, filtering, etc 2022-11-06 23:01:17 +00:00
glimmer biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
gnome-chemistry-utils *: Recursive revbup from graphics/freetype2 2023-01-29 21:14:22 +00:00
gp biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
gromacs massive revision bump after textproc/icu update 2022-11-23 16:18:32 +00:00
hisat2 Change MAINTAINER= to OWNER= on mission-critical packages 2022-12-28 15:27:15 +00:00
hmmer biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
htslib Change MAINTAINER= to OWNER= on mission-critical packages 2022-12-28 15:27:15 +00:00
igv biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
kallisto Change MAINTAINER= to OWNER= on mission-critical packages 2022-12-28 15:27:15 +00:00
lucy biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
maeparser *: Recursive revbump from Boost 1.81.0 2023-01-22 16:28:12 +00:00
miniasm biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
minimap2 (biology/minimap2) Updated 2.18 to 2.24 2022-03-13 08:05:07 +00:00
molsketch *: Recursive revbup from graphics/freetype2 2023-01-29 21:14:22 +00:00
mopac biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
mpqc *: recursive bump for perl 5.36 2022-06-28 11:30:51 +00:00
mummer *: recursive bump for perl 5.36 2022-06-28 11:30:51 +00:00
ncbi-blast+ massive revision bump after textproc/icu update 2022-11-23 16:18:32 +00:00
nut biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
openbabel *: Recursive revbup from graphics/freetype2 2023-01-29 21:14:22 +00:00
p5-Bio-ASN1-EntrezGene *: recursive bump for perl 5.36 2022-06-28 11:30:51 +00:00
pdbalign biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
peak-classifier Change MAINTAINER= to OWNER= on mission-critical packages 2022-12-28 15:27:15 +00:00
phylip biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
plink biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
plinkseq revbump for devel/protobuf 2022-04-03 18:50:16 +00:00
primer3 biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
profit biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
puzzle biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
py-biopython py-biopython: update to 1.79. 2022-02-17 10:44:49 +00:00
py-cutadapt py-cutadapt: fix build with python 3.11 2022-11-16 23:02:14 +00:00
py-dnaio py-dnaio: update to 0.9.1. 2022-11-14 10:39:40 +00:00
py-macs2 py-macs2: does not support python 2.x 2023-01-29 00:33:04 +00:00
py-pydicom py-pydicom: updated to 2.3.1 2022-11-15 10:15:54 +00:00
R-popbio biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
racon *: remove pkg-config from tools where no buildlink3.mk file is included 2022-07-25 11:12:18 +00:00
rasmol biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
rna-seq biology/rna-seq: Add www/webbrowser dep to metapackage 2023-01-23 21:41:53 +00:00
samtools Change MAINTAINER= to OWNER= on mission-critical packages 2022-12-28 15:27:15 +00:00
sewer biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
stacks *: Revbump packages that use Python at runtime without a PKGNAME prefix 2022-06-30 11:18:01 +00:00
stride biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
trimmomatic biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
vcf-split Change MAINTAINER= to OWNER= on mission-critical packages 2022-12-28 15:27:15 +00:00
vcf2hap Change MAINTAINER= to OWNER= on mission-critical packages 2022-12-28 15:27:15 +00:00
vsearch biology/vsearch: Update to 2.18.0 2021-12-17 19:20:44 +00:00
xmakemol biology/xmakemol: import package from wip. 2022-12-30 18:17:48 +00:00
xylem biology: Replace RMD160 checksums with BLAKE2s checksums 2021-10-26 10:03:36 +00:00
Makefile biology/Makefile: Add atac-seq 2023-01-23 21:39:11 +00:00